Wall clock time and date at job start Wed Apr 1 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00231 * 2 1 4 4 N 1.34780 * 119.99720 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00157 * 5.06050 * 4 2 1 6 6 C 1.46508 * 119.99751 * 185.06415 * 4 2 1 7 7 C 1.50699 * 109.47082 * 89.99523 * 6 4 2 8 8 O 1.21277 * 120.00456 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99780 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99867 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46983 * 174.89511 * 10 9 7 12 12 N 1.46503 * 115.54723 * 324.32206 * 11 10 9 13 13 C 1.34774 * 120.00073 * 304.10968 * 12 11 10 14 14 O 1.21285 * 120.00078 * 355.17960 * 13 12 11 15 15 C 1.50698 * 120.00127 * 175.18709 * 13 12 11 16 16 S 1.81000 * 109.47409 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00141 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00012 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99926 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99922 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47397 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46819 * 120.00381 * 21 19 17 24 24 H 1.48497 * 109.46670 * 239.99956 * 21 19 17 25 25 C 1.52995 * 117.49948 * 109.99456 * 11 10 9 26 26 C 1.52997 * 117.49809 * 178.65390 * 11 10 9 27 27 H 1.08995 * 109.47466 * 185.23501 * 1 2 3 28 28 H 1.08999 * 109.47030 * 305.23524 * 1 2 3 29 29 H 1.08999 * 109.46675 * 65.23195 * 1 2 3 30 30 H 1.09001 * 109.46800 * 275.28963 * 5 4 2 31 31 H 1.08993 * 109.46759 * 35.28920 * 5 4 2 32 32 H 1.09000 * 109.47009 * 155.29255 * 5 4 2 33 33 H 1.09003 * 109.47087 * 329.99446 * 6 4 2 34 34 H 1.08997 * 109.46735 * 209.99799 * 6 4 2 35 35 H 0.96998 * 120.00102 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47451 * 54.89334 * 10 9 7 37 37 H 1.09001 * 109.47230 * 294.89008 * 10 9 7 38 38 H 0.96997 * 119.99759 * 124.38514 * 12 11 10 39 39 H 1.09011 * 109.46653 * 299.99944 * 15 13 12 40 40 H 1.08994 * 109.47648 * 59.99440 * 15 13 12 41 41 H 0.97005 * 119.99851 * 180.02562 * 20 19 17 42 42 H 1.09005 * 117.49711 * 215.00392 * 25 11 10 43 43 H 1.09001 * 117.50143 * 0.02562 * 25 11 10 44 44 H 1.09000 * 117.49968 * 359.97438 * 26 11 10 45 45 H 1.09004 * 117.49867 * 144.97062 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4526 -2.4334 -0.1130 6 6 3.6416 -1.1698 0.1115 7 6 4.0338 -1.2339 1.5651 8 8 3.1776 -1.2740 2.4231 9 7 5.3363 -1.2477 1.9117 10 6 5.7176 -1.3105 3.3248 11 6 7.2378 -1.4420 3.4374 12 7 7.8811 -2.2480 2.3968 13 6 7.4848 -3.5190 2.1876 14 8 6.6577 -4.0242 2.9168 15 6 8.0695 -4.3127 1.0477 16 16 7.3425 -5.9702 1.0312 17 6 8.1795 -6.6576 -0.3586 18 1 8.8962 -6.0630 -0.9057 19 6 7.9187 -7.9635 -0.7497 20 7 7.0456 -8.6883 -0.0826 21 14 8.8066 -8.6925 -2.2226 22 1 9.7295 -7.6798 -2.7953 23 1 9.5826 -9.8835 -1.7931 24 1 7.8130 -9.0935 -3.2508 25 6 8.0126 -0.2393 3.9795 26 6 7.8403 -1.4915 4.8428 27 1 -0.3634 -1.0233 0.0938 28 1 -0.3633 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9331 30 1 1.1119 -2.7455 0.8743 31 1 0.5924 -2.3007 -0.7690 32 1 2.1117 -3.1961 -0.5278 33 1 4.0417 -0.2584 -0.3330 34 1 4.0446 -2.0366 -0.4122 35 1 6.0211 -1.2159 1.2255 36 1 5.2427 -2.1736 3.7912 37 1 5.3933 -0.4005 3.8295 38 1 8.5949 -1.8681 1.8611 39 1 7.8508 -3.8102 0.1054 40 1 9.1490 -4.3911 1.1756 41 1 6.8636 -9.6012 -0.3556 42 1 9.0011 -0.0477 3.5618 43 1 7.4394 0.6455 4.2563 44 1 7.1538 -1.4299 5.6872 45 1 8.7152 -2.1240 4.9934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358648944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:59 Heat of formation + Delta-G solvation = -101.215751 kcal Electronic energy + Delta-G solvation = -27831.504176 eV Core-core repulsion = 23782.502165 eV Total energy + Delta-G solvation = -4049.002010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54512 -40.97426 -39.93175 -38.44372 -36.53522 -35.31050 -34.57130 -34.05766 -31.86516 -30.51210 -29.49712 -27.92581 -27.63798 -26.48022 -23.59973 -22.67566 -21.95561 -20.97208 -20.27094 -19.82795 -18.63427 -18.20416 -17.83829 -17.78266 -17.20496 -16.86559 -16.57513 -16.41633 -16.29713 -16.10576 -15.71398 -15.34624 -14.84935 -14.67692 -14.53230 -14.47804 -14.19823 -13.97038 -13.73093 -13.68081 -13.42452 -13.23127 -13.13629 -13.02924 -12.91593 -12.60389 -12.58305 -12.43151 -12.01773 -11.71544 -11.47891 -11.30359 -11.14699 -11.02007 -10.83563 -10.23221 -10.18864 -10.00183 -9.78238 -8.63854 -8.33420 -6.10449 1.26879 1.40657 1.41849 1.47817 1.51740 1.57781 1.62667 1.85647 2.11744 2.28309 2.35038 2.74305 3.01259 3.31336 3.50462 3.64556 3.69249 3.82409 3.89960 4.03644 4.11586 4.25763 4.29666 4.32983 4.41704 4.47112 4.52812 4.57990 4.59878 4.65579 4.72732 4.75125 4.88369 4.97795 5.04537 5.18025 5.24641 5.28463 5.44034 5.54103 6.21455 6.26860 6.40704 6.51520 7.02549 7.08755 7.13730 7.29042 8.75546 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.003294 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.105632 B = 8497.238040 C =11069.607582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.595 6.595 4 N -0.603 5.603 5 C 0.072 3.928 6 C 0.093 3.907 7 C 0.493 3.507 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.162 3.838 11 C 0.069 3.931 12 N -0.684 5.684 13 C 0.538 3.462 14 O -0.549 6.549 15 C -0.130 4.130 16 S -0.147 6.147 17 C -0.543 4.543 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.995 3.005 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.274 1.274 25 C -0.127 4.127 26 C -0.178 4.178 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 19.593 -0.624 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.477 6.477 4 N -0.334 5.334 5 C -0.070 4.070 6 C -0.034 4.034 7 C 0.279 3.721 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.037 3.963 11 C -0.019 4.019 12 N -0.339 5.339 13 C 0.324 3.676 14 O -0.425 6.425 15 C -0.281 4.281 16 S 0.080 5.920 17 C -0.691 4.691 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.817 3.183 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.200 1.200 25 C -0.164 4.164 26 C -0.217 4.217 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.260 0.740 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.121 0.879 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.676 19.099 1.186 19.699 hybrid contribution 1.951 -0.395 -1.626 2.571 sum -2.724 18.704 -0.440 18.907 Atomic orbital electron populations 1.21987 0.88159 1.06406 1.06127 1.21643 0.92550 0.82280 0.73584 1.90656 1.71961 1.32675 1.52375 1.47664 1.05882 1.08033 1.71869 1.22112 0.98479 0.83821 1.02540 1.21425 0.82869 1.07077 0.91990 1.21703 0.82525 0.75030 0.92849 1.90652 1.50860 1.51167 1.53139 1.45673 1.07158 1.74414 1.08907 1.20862 0.91901 1.01099 0.82484 1.20754 0.90417 0.99815 0.90895 1.45108 1.39979 1.11077 1.37724 1.20087 0.81199 0.81856 0.84494 1.90729 1.34044 1.69985 1.47782 1.23379 1.04686 0.99650 1.00390 1.85659 1.57483 1.07073 1.41808 1.23227 1.28565 1.01588 1.15714 0.89894 1.26071 0.95927 0.96443 1.00574 1.70187 1.33719 1.09824 1.41031 0.84955 0.78071 0.78163 0.77080 1.17946 1.20306 1.19982 1.23580 1.02081 0.91317 0.99434 1.23443 1.03218 1.01672 0.93384 0.87886 0.88648 0.86779 0.93038 0.87279 0.89899 0.86122 0.85025 0.75269 0.93812 0.90119 0.74012 0.86740 0.87449 0.92106 0.85537 0.85977 0.87897 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.90 71.24 0.71 -1.81 16 2 C 0.51 12.64 7.77 87.66 0.68 13.32 16 3 O -0.60 -19.53 16.65 -3.05 -0.05 -19.58 16 4 N -0.60 -13.91 2.36 -851.11 -2.01 -15.92 16 5 C 0.07 1.26 9.70 127.77 1.24 2.50 16 6 C 0.09 2.16 5.97 85.63 0.51 2.67 16 7 C 0.49 14.63 7.90 87.66 0.69 15.32 16 8 O -0.58 -21.96 16.43 -3.02 -0.05 -22.01 16 9 N -0.71 -17.78 5.17 -463.06 -2.39 -20.18 16 10 C 0.16 4.22 5.08 86.38 0.44 4.66 16 11 C 0.07 1.40 2.19 3.60 0.01 1.40 16 12 N -0.68 -14.30 4.53 -422.93 -1.92 -16.22 16 13 C 0.54 17.60 7.40 87.66 0.65 18.25 16 14 O -0.55 -23.75 14.76 -3.04 -0.04 -23.79 16 15 C -0.13 -4.60 6.16 71.24 0.44 -4.17 16 16 S -0.15 -7.73 20.57 -56.49 -1.16 -8.89 16 17 C -0.54 -29.54 9.50 67.95 0.65 -28.90 16 18 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -54.42 13.22 21.65 0.29 -54.13 16 21 Si 1.00 42.07 29.55 68.60 2.03 44.10 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.13 -1.50 10.10 30.62 0.31 -1.19 16 26 C -0.18 -3.26 10.18 30.62 0.31 -2.95 16 27 H 0.10 1.08 5.81 -2.39 -0.01 1.07 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.12 6.63 -2.39 -0.02 1.10 16 32 H 0.08 1.40 7.83 -2.39 -0.02 1.38 16 33 H 0.12 2.59 7.36 -2.39 -0.02 2.58 16 34 H 0.13 2.48 7.86 -2.39 -0.02 2.46 16 35 H 0.41 8.12 7.78 -92.71 -0.72 7.40 16 36 H 0.04 1.54 7.53 -2.39 -0.02 1.52 16 37 H 0.08 1.93 7.91 -2.39 -0.02 1.91 16 38 H 0.42 5.54 8.82 -92.71 -0.82 4.73 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 41 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 42 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.12 1.16 8.06 -2.39 -0.02 1.14 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -89.38 398.74 1.27 -88.10 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.51 Total: 28.15 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.10 Total: 20.37 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -6.04 Total: -106.45 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -0.15 Total: -65.39 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.89 kcal Total: -89.38 1.27 -88.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358648944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.112 kcal (2) G-P(sol) polarization free energy of solvation -89.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds