Wall clock time and date at job start Wed Apr 1 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46811 * 2 1 4 4 C 1.34776 * 119.99846 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99940 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00035 * 179.97438 * 4 3 2 7 7 C 1.50706 * 109.47294 * 180.02562 * 6 4 3 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 4 10 10 C 1.47068 * 136.05857 * 359.63106 * 9 7 6 11 11 C 1.53758 * 87.88486 * 152.96391 * 10 9 7 12 12 N 1.46500 * 114.26548 * 139.79230 * 11 10 9 13 13 C 1.46496 * 120.00002 * 326.47766 * 12 11 10 14 14 C 1.34775 * 120.00091 * 146.47262 * 12 11 10 15 15 O 1.21278 * 119.99866 * 359.97438 * 14 12 11 16 16 C 1.50703 * 120.00141 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.47075 * 180.02562 * 16 14 12 18 18 C 1.76204 * 99.99993 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99877 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99604 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00147 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47042 * 90.00175 * 22 20 18 24 24 H 1.48504 * 109.46961 * 209.99723 * 22 20 18 25 25 H 1.48499 * 109.47080 * 329.99958 * 22 20 18 26 26 C 1.47066 * 136.05240 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47559 * 299.99823 * 1 2 3 29 29 H 1.08996 * 109.47261 * 60.00359 * 1 2 3 30 30 H 1.08998 * 109.46879 * 239.99628 * 2 1 3 31 31 H 1.09001 * 109.46611 * 119.99916 * 2 1 3 32 32 H 0.97002 * 120.00387 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46665 * 60.00498 * 6 4 3 34 34 H 1.09000 * 109.47722 * 300.00830 * 6 4 3 35 35 H 1.08998 * 113.46458 * 267.69369 * 10 9 7 36 36 H 1.08996 * 113.46737 * 38.13716 * 10 9 7 37 37 H 1.09005 * 114.39200 * 272.67447 * 11 10 9 38 38 H 1.09000 * 109.47905 * 89.99818 * 13 12 11 39 39 H 1.09006 * 109.47117 * 209.99762 * 13 12 11 40 40 H 1.08999 * 109.46926 * 329.99462 * 13 12 11 41 41 H 1.09002 * 109.46462 * 299.99583 * 16 14 12 42 42 H 1.08997 * 109.47390 * 60.00020 * 16 14 12 43 43 H 0.96999 * 119.99476 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.46871 * 321.85863 * 26 9 7 45 45 H 1.08999 * 113.46702 * 92.24946 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0001 9 7 6.0265 4.2156 0.0001 10 6 5.6722 5.6429 -0.0065 11 6 7.0102 5.9199 0.6987 12 7 7.7056 7.1177 0.2214 13 6 7.6034 7.5123 -1.1858 14 6 8.4394 7.8568 1.0768 15 8 8.5236 7.5305 2.2418 16 6 9.1543 9.0893 0.5860 17 16 10.0465 9.8570 1.9610 18 6 10.7687 11.2314 1.1277 19 1 10.5891 11.3786 0.0730 20 6 11.5675 12.1254 1.8271 21 7 12.1074 13.1519 1.2045 22 14 11.8776 11.8712 3.6516 23 1 13.0877 11.0303 3.8355 24 1 12.0854 13.1877 4.3065 25 1 10.7062 11.1935 4.2630 26 6 7.4398 4.6223 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 0.0004 33 1 3.4819 3.5626 0.8895 34 1 3.4827 3.5618 -0.8904 35 1 5.6123 6.0706 -1.0072 36 1 4.8009 5.8767 0.6053 37 1 6.9691 5.8499 1.7857 38 1 6.7502 8.1781 -1.3155 39 1 8.5156 8.0280 -1.4857 40 1 7.4683 6.6242 -1.8032 41 1 9.8614 8.8119 -0.1958 42 1 8.4274 9.7954 0.1846 43 1 12.6660 13.7764 1.6932 44 1 8.0746 3.9866 0.6169 45 1 7.8458 4.7803 -0.9994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358718801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:15 Heat of formation + Delta-G solvation = -54.288552 kcal Electronic energy + Delta-G solvation = -26582.312222 eV Core-core repulsion = 22535.345127 eV Total energy + Delta-G solvation = -4046.967094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17663 -40.20867 -39.05249 -37.76018 -35.60491 -34.89410 -32.47155 -32.22338 -30.72986 -29.75171 -28.18698 -27.07610 -26.34271 -25.65087 -23.64373 -22.38459 -21.11737 -19.49942 -19.25488 -17.86960 -17.78245 -17.30931 -17.01988 -16.51572 -16.37160 -16.03866 -15.86884 -15.30330 -15.25206 -15.00704 -14.51739 -13.97407 -13.90508 -13.68346 -13.50573 -13.20944 -13.13575 -13.10622 -12.88195 -12.82852 -12.62702 -12.47240 -12.36574 -12.25141 -12.08696 -11.93081 -11.32519 -11.28421 -11.03421 -10.66788 -10.49183 -9.90473 -9.77873 -9.59320 -9.50832 -9.04621 -9.03358 -8.78133 -8.54024 -6.96619 -6.32244 -4.04661 2.09561 2.21133 2.38872 2.63484 2.75180 2.88460 3.16958 3.31256 3.47900 3.54548 3.88619 4.02522 4.22073 4.29945 4.47537 4.51806 4.54857 4.56085 4.66160 4.71963 4.79915 4.80996 4.84034 4.98728 5.02888 5.06983 5.12246 5.23952 5.28747 5.37597 5.38486 5.41845 5.51574 5.53488 5.68857 5.75887 5.93547 5.97463 6.35340 7.01173 7.20951 7.37075 7.78921 7.90647 7.95638 8.27581 8.37808 9.13969 10.76878 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.001635 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.526325 B =17119.023578 C =17236.923445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.511 3.489 5 O -0.493 6.493 6 C -0.158 4.158 7 C 0.546 3.454 8 O -0.491 6.491 9 N -0.649 5.649 10 C 0.086 3.914 11 C 0.117 3.883 12 N -0.612 5.612 13 C 0.073 3.927 14 C 0.536 3.464 15 O -0.512 6.512 16 C -0.121 4.121 17 S -0.143 6.143 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.097 3.903 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.090 3.910 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 -18.936 -7.166 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.201 4.201 7 C 0.333 3.667 8 O -0.362 6.362 9 N -0.387 5.387 10 C -0.038 4.038 11 C 0.011 3.989 12 N -0.347 5.347 13 C -0.070 4.070 14 C 0.324 3.676 15 O -0.386 6.386 16 C -0.272 4.272 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.033 4.033 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.154 0.846 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.896 -20.778 -5.431 32.128 hybrid contribution -0.242 1.079 -0.912 1.433 sum -24.138 -19.699 -6.343 31.795 Atomic orbital electron populations 1.22005 0.94330 1.03359 1.02532 1.21287 0.94192 0.82819 1.02566 1.46027 1.06827 1.09038 1.77326 1.19991 0.82394 0.90738 0.77444 1.90887 1.54408 1.45429 1.45693 1.21509 0.94595 0.97200 1.06770 1.19405 0.88516 0.81670 0.77141 1.90894 1.69252 1.29154 1.46924 1.49309 1.09629 1.05064 1.74722 1.23576 0.99085 0.79653 1.01528 1.22795 0.91297 0.83848 1.00934 1.47688 1.50711 1.26218 1.10102 1.21877 1.03371 1.00834 0.80962 1.20388 0.77873 0.83850 0.85523 1.90709 1.60601 1.70184 1.17096 1.23323 1.02427 0.96827 1.04592 1.84835 1.62244 1.31563 1.13007 1.22293 1.35357 1.10167 0.99114 0.89356 1.24705 0.93911 0.93778 0.98826 1.69939 1.31451 1.13333 1.36875 0.86744 0.81346 0.78773 0.85039 1.19188 1.19924 1.15931 1.23492 0.84146 0.94245 1.01463 0.90720 0.91906 0.91947 0.91483 0.91451 0.76688 0.85958 0.86084 0.88953 0.89558 0.84613 0.92050 0.89970 0.91116 0.88327 0.88281 0.91913 0.89631 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.03 37.16 0.37 -0.06 16 2 C 0.11 0.64 6.39 -4.04 -0.03 0.62 16 3 N -0.74 -4.09 5.56 -60.29 -0.33 -4.42 16 4 C 0.51 4.76 7.82 -10.99 -0.09 4.68 16 5 O -0.49 -7.45 14.18 -18.96 -0.27 -7.72 16 6 C -0.16 -1.01 6.01 -29.03 -0.17 -1.18 16 7 C 0.55 6.12 8.07 -10.98 -0.09 6.04 16 8 O -0.49 -8.22 14.95 -18.96 -0.28 -8.50 16 9 N -0.65 -6.01 3.69 -185.04 -0.68 -6.69 16 10 C 0.09 0.55 7.85 -8.36 -0.07 0.48 16 11 C 0.12 1.14 4.57 -67.67 -0.31 0.83 16 12 N -0.61 -6.84 3.11 -173.54 -0.54 -7.38 16 13 C 0.07 0.55 8.92 59.84 0.53 1.08 16 14 C 0.54 8.72 7.69 -10.98 -0.08 8.64 16 15 O -0.51 -10.30 15.37 5.56 0.09 -10.22 16 16 C -0.12 -2.17 4.71 36.01 0.17 -2.01 16 17 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 18 C -0.52 -14.58 10.04 30.94 0.31 -14.26 16 19 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 22 Si 0.86 21.36 27.74 -169.99 -4.71 16.64 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 26 C 0.09 0.89 8.17 -8.49 -0.07 0.82 16 27 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 0.84 8.47 -40.82 -0.35 0.49 16 33 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.43 6.57 -51.93 -0.34 0.09 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.14 1.58 7.29 -51.93 -0.38 1.20 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.67 6.44 -51.93 -0.33 0.33 16 40 H 0.07 0.39 6.17 -51.93 -0.32 0.07 16 41 H 0.10 1.64 7.40 -51.91 -0.38 1.25 16 42 H 0.10 1.63 8.11 -51.92 -0.42 1.21 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.76 6.97 -51.93 -0.36 0.40 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -40.30 389.03 -8.40 -48.70 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.69 Total: -3.90 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.39 Total: 8.34 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.78 Total: -43.73 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.47 Total: -26.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.30 -8.40 -48.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358718801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.584 kcal (2) G-P(sol) polarization free energy of solvation -40.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds