Wall clock time and date at job start Wed Apr 1 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46811 * 2 1 4 4 C 1.34776 * 119.99846 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99940 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00035 * 179.97438 * 4 3 2 7 7 C 1.50706 * 109.47294 * 180.02562 * 6 4 3 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 4 10 10 C 1.47068 * 136.05857 * 359.63106 * 9 7 6 11 11 C 1.53758 * 87.88486 * 152.96391 * 10 9 7 12 12 N 1.46500 * 114.26548 * 139.79230 * 11 10 9 13 13 C 1.46496 * 120.00002 * 326.47766 * 12 11 10 14 14 C 1.34775 * 120.00091 * 146.47262 * 12 11 10 15 15 O 1.21278 * 119.99866 * 359.97438 * 14 12 11 16 16 C 1.50703 * 120.00141 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.47075 * 180.02562 * 16 14 12 18 18 C 1.76204 * 99.99993 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99877 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99604 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00147 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47042 * 90.00175 * 22 20 18 24 24 H 1.48504 * 109.46961 * 209.99723 * 22 20 18 25 25 H 1.48499 * 109.47080 * 329.99958 * 22 20 18 26 26 C 1.47066 * 136.05240 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47559 * 299.99823 * 1 2 3 29 29 H 1.08996 * 109.47261 * 60.00359 * 1 2 3 30 30 H 1.08998 * 109.46879 * 239.99628 * 2 1 3 31 31 H 1.09001 * 109.46611 * 119.99916 * 2 1 3 32 32 H 0.97002 * 120.00387 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46665 * 60.00498 * 6 4 3 34 34 H 1.09000 * 109.47722 * 300.00830 * 6 4 3 35 35 H 1.08998 * 113.46458 * 267.69369 * 10 9 7 36 36 H 1.08996 * 113.46737 * 38.13716 * 10 9 7 37 37 H 1.09005 * 114.39200 * 272.67447 * 11 10 9 38 38 H 1.09000 * 109.47905 * 89.99818 * 13 12 11 39 39 H 1.09006 * 109.47117 * 209.99762 * 13 12 11 40 40 H 1.08999 * 109.46926 * 329.99462 * 13 12 11 41 41 H 1.09002 * 109.46462 * 299.99583 * 16 14 12 42 42 H 1.08997 * 109.47390 * 60.00020 * 16 14 12 43 43 H 0.96999 * 119.99476 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.46871 * 321.85863 * 26 9 7 45 45 H 1.08999 * 113.46702 * 92.24946 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0001 9 7 6.0265 4.2156 0.0001 10 6 5.6722 5.6429 -0.0065 11 6 7.0102 5.9199 0.6987 12 7 7.7056 7.1177 0.2214 13 6 7.6034 7.5123 -1.1858 14 6 8.4394 7.8568 1.0768 15 8 8.5236 7.5305 2.2418 16 6 9.1543 9.0893 0.5860 17 16 10.0465 9.8570 1.9610 18 6 10.7687 11.2314 1.1277 19 1 10.5891 11.3786 0.0730 20 6 11.5675 12.1254 1.8271 21 7 12.1074 13.1519 1.2045 22 14 11.8776 11.8712 3.6516 23 1 13.0877 11.0303 3.8355 24 1 12.0854 13.1877 4.3065 25 1 10.7062 11.1935 4.2630 26 6 7.4398 4.6223 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 0.0004 33 1 3.4819 3.5626 0.8895 34 1 3.4827 3.5618 -0.8904 35 1 5.6123 6.0706 -1.0072 36 1 4.8009 5.8767 0.6053 37 1 6.9691 5.8499 1.7857 38 1 6.7502 8.1781 -1.3155 39 1 8.5156 8.0280 -1.4857 40 1 7.4683 6.6242 -1.8032 41 1 9.8614 8.8119 -0.1958 42 1 8.4274 9.7954 0.1846 43 1 12.6660 13.7764 1.6932 44 1 8.0746 3.9866 0.6169 45 1 7.8458 4.7803 -0.9994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358718801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:15 Heat of formation + Delta-G solvation = -85.566008 kcal Electronic energy + Delta-G solvation = -26583.668514 eV Core-core repulsion = 22535.345127 eV Total energy + Delta-G solvation = -4048.323387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98757 -41.02195 -40.06837 -38.69518 -36.22929 -35.90963 -34.64611 -32.87063 -31.57564 -30.63448 -29.03033 -27.87037 -27.77666 -27.00863 -24.15369 -23.22013 -21.80124 -20.60528 -19.94883 -19.61134 -18.59411 -18.36511 -17.68853 -17.42705 -17.11547 -17.08039 -16.84290 -16.76282 -16.15842 -16.08620 -15.74259 -15.06695 -14.83852 -14.69860 -14.59705 -14.50258 -14.13621 -13.84729 -13.78043 -13.47277 -13.34772 -13.25717 -13.16717 -13.14660 -13.00512 -12.89606 -12.68187 -12.61261 -12.34225 -12.05796 -11.85368 -11.29507 -11.15215 -10.97138 -10.58384 -10.48635 -10.08918 -9.83247 -9.69157 -8.97352 -8.49518 -6.19789 0.98230 1.32914 1.36206 1.48977 1.50930 1.52111 1.62972 1.67566 2.11264 2.26443 2.39611 2.71553 2.89253 3.23104 3.32398 3.60752 3.69501 3.88938 4.05987 4.15662 4.18446 4.20796 4.27567 4.33447 4.35785 4.40461 4.48642 4.52015 4.52434 4.58411 4.74297 4.75490 4.93088 4.96681 5.06240 5.06462 5.27746 5.48336 5.49351 5.73055 6.14003 6.18459 6.55192 6.64768 6.96393 7.07168 7.08120 7.34386 8.62605 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.001635 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.526325 B =17119.023578 C =17236.923445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.717 5.717 4 C 0.502 3.498 5 O -0.562 6.562 6 C -0.143 4.143 7 C 0.536 3.464 8 O -0.560 6.560 9 N -0.647 5.647 10 C 0.106 3.894 11 C 0.109 3.891 12 N -0.594 5.594 13 C 0.060 3.940 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.105 4.105 17 S -0.183 6.183 18 C -0.525 4.525 19 H 0.065 0.935 20 C 0.048 3.952 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.260 1.260 25 H -0.236 1.236 26 C 0.084 3.916 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.420 0.580 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.276 0.724 44 H 0.057 0.943 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.279 -18.336 -8.198 34.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.372 5.372 4 C 0.288 3.712 5 O -0.439 6.439 6 C -0.185 4.185 7 C 0.326 3.674 8 O -0.436 6.436 9 N -0.384 5.384 10 C -0.017 4.017 11 C 0.003 3.997 12 N -0.327 5.327 13 C -0.081 4.081 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.256 4.256 17 S 0.044 5.956 18 C -0.673 4.673 19 H 0.083 0.917 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.190 1.190 24 H -0.185 1.185 25 H -0.160 1.160 26 C -0.040 4.040 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.258 0.742 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.316 -20.120 -6.514 34.545 hybrid contribution 0.718 0.813 -0.742 1.314 sum -26.598 -19.307 -7.256 33.658 Atomic orbital electron populations 1.21941 0.91516 1.04085 1.03584 1.21321 0.96358 0.82718 1.00966 1.45900 1.06150 1.09787 1.75373 1.20629 0.82879 0.91460 0.76277 1.90873 1.56311 1.47634 1.49129 1.21567 0.90668 0.95736 1.10535 1.20303 0.90453 0.80935 0.75735 1.90876 1.70922 1.31685 1.50117 1.49339 1.09307 1.06120 1.73625 1.23702 0.97677 0.77072 1.03217 1.22796 0.93819 0.82888 1.00156 1.47579 1.48804 1.25376 1.10934 1.22252 1.04369 1.02823 0.78633 1.20065 0.78349 0.83761 0.85393 1.90698 1.62659 1.71359 1.19152 1.23298 1.02597 0.97771 1.01903 1.84797 1.63332 1.30786 1.16723 1.22445 1.35205 1.11290 0.98344 0.91664 1.25511 0.93899 0.93669 1.02707 1.70015 1.32508 1.14347 1.38586 0.85909 0.81032 0.79173 0.80517 1.19037 1.18457 1.16010 1.23542 0.84783 0.93783 1.01899 0.90259 0.90882 0.90716 0.93090 0.93315 0.74212 0.82196 0.81631 0.85692 0.86416 0.86954 0.89343 0.90476 0.88212 0.86867 0.86329 0.91449 0.92444 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 10.03 71.98 0.72 0.24 16 2 C 0.11 1.18 6.39 86.38 0.55 1.73 16 3 N -0.72 -6.51 5.56 -463.06 -2.57 -9.08 16 4 C 0.50 8.79 7.82 87.66 0.69 9.48 16 5 O -0.56 -17.82 14.18 20.40 0.29 -17.53 16 6 C -0.14 -1.32 6.01 29.10 0.18 -1.14 16 7 C 0.54 11.28 8.07 87.66 0.71 11.99 16 8 O -0.56 -19.47 14.95 20.42 0.31 -19.16 16 9 N -0.65 -10.34 3.69 -857.73 -3.16 -13.50 16 10 C 0.11 0.83 7.85 83.27 0.65 1.48 16 11 C 0.11 1.88 4.57 45.56 0.21 2.09 16 12 N -0.59 -11.62 3.11 -821.36 -2.56 -14.18 16 13 C 0.06 0.65 8.92 127.77 1.14 1.79 16 14 C 0.54 16.75 7.69 87.66 0.67 17.43 16 15 O -0.56 -22.56 15.37 -3.02 -0.05 -22.61 16 16 C -0.11 -3.62 4.71 71.24 0.34 -3.29 16 17 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 18 C -0.53 -29.60 10.04 67.95 0.68 -28.91 16 19 H 0.07 3.85 8.03 -2.91 -0.02 3.82 16 20 C 0.05 2.73 5.50 84.86 0.47 3.20 16 21 N -0.92 -54.73 13.97 21.65 0.30 -54.43 16 22 Si 0.91 44.28 27.74 68.60 1.90 46.18 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 26 C 0.08 1.55 8.17 83.19 0.68 2.23 16 27 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 0.19 8.47 -92.71 -0.79 -0.59 16 33 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.17 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.13 0.29 6.57 -2.39 -0.02 0.27 16 36 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.11 2.55 7.29 -2.38 -0.02 2.53 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.97 6.44 -2.38 -0.02 0.96 16 40 H 0.10 0.55 6.17 -2.39 -0.01 0.54 16 41 H 0.11 3.58 7.40 -2.39 -0.02 3.57 16 42 H 0.12 3.63 8.11 -2.40 -0.02 3.61 16 43 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.56 6.97 -2.39 -0.02 1.54 16 Total: -1.00 -96.15 389.03 1.29 -94.87 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 0.19 Total: 1.11 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 7.68 Total: 18.30 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -7.99 Total: -91.20 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: 0.55 Total: -59.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -96.15 1.29 -94.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358718801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.299 kcal (2) G-P(sol) polarization free energy of solvation -96.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds