Wall clock time and date at job start Wed Apr 1 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47243 * 2 1 4 4 C 1.46497 * 119.99513 * 277.99692 * 3 2 1 5 5 C 1.50701 * 109.47236 * 274.99668 * 4 3 2 6 6 H 1.08004 * 119.99679 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00342 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00399 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46880 * 60.00213 * 9 7 5 11 11 H 1.48499 * 109.47369 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46934 * 300.00518 * 9 7 5 13 13 S 1.65603 * 120.00044 * 97.99474 * 3 2 1 14 14 O 1.42092 * 106.40221 * 329.49431 * 13 3 2 15 15 O 1.42102 * 106.39916 * 196.57585 * 13 3 2 16 16 N 1.65600 * 107.21621 * 83.03626 * 13 3 2 17 17 C 1.46500 * 119.99830 * 66.47165 * 16 13 3 18 18 C 1.50705 * 109.46902 * 162.61869 * 17 16 13 19 19 N 1.35598 * 119.65012 * 259.72698 * 18 17 16 20 20 H 0.97000 * 119.26630 * 0.02562 * 19 18 17 21 21 C 1.35603 * 121.47036 * 179.75585 * 19 18 17 22 22 C 1.35088 * 120.69970 * 0.52305 * 21 19 18 23 23 C 1.50697 * 120.37993 * 179.72344 * 22 21 19 24 24 C 1.41485 * 119.24710 * 359.74147 * 22 21 19 25 25 O 1.22241 * 120.68453 * 180.02562 * 24 22 21 26 26 C 1.35090 * 119.64931 * 79.99892 * 18 17 16 27 27 C 1.50698 * 120.37960 * 359.95831 * 26 18 17 28 28 H 1.09006 * 109.46546 * 305.02643 * 1 2 3 29 29 H 1.08995 * 109.47021 * 65.02289 * 1 2 3 30 30 H 1.09000 * 109.47137 * 185.03318 * 1 2 3 31 31 H 1.08992 * 109.47464 * 239.99721 * 2 1 3 32 32 H 1.09005 * 109.47478 * 119.99727 * 2 1 3 33 33 H 1.08997 * 109.47669 * 34.99890 * 4 3 2 34 34 H 1.08999 * 109.47235 * 155.00222 * 4 3 2 35 35 H 0.97000 * 120.00134 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99880 * 246.19615 * 16 13 3 37 37 H 1.08994 * 109.47257 * 282.61760 * 17 16 13 38 38 H 1.09004 * 109.47241 * 42.62306 * 17 16 13 39 39 H 1.08007 * 119.65226 * 180.26482 * 21 19 18 40 40 H 1.09000 * 109.47067 * 270.02014 * 23 22 21 41 41 H 1.09005 * 109.47408 * 30.02018 * 23 22 21 42 42 H 1.08998 * 109.47218 * 150.01696 * 23 22 21 43 43 H 1.09003 * 109.47445 * 89.99426 * 27 26 18 44 44 H 1.08996 * 109.47164 * 209.99810 * 27 26 18 45 45 H 1.09004 * 109.47148 * 329.99922 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.0961 2.1306 -1.2564 5 6 3.4004 1.8221 -1.9455 6 1 4.1012 1.1361 -1.4929 7 6 3.6991 2.4156 -3.1535 8 7 2.8461 3.2514 -3.7044 9 14 5.3162 2.0338 -4.0073 10 1 5.3932 0.5787 -4.2937 11 1 5.3955 2.7942 -5.2803 12 1 6.4456 2.4253 -3.1261 13 16 2.4825 2.0955 1.4202 14 8 1.6868 1.5108 2.4421 15 8 2.5233 3.4939 1.1714 16 7 4.0430 1.6275 1.7171 17 6 5.1218 2.0705 0.8305 18 6 6.4479 1.8874 1.5227 19 7 7.0566 2.9533 2.0990 20 1 6.6287 3.8228 2.0584 21 6 8.2475 2.8296 2.7356 22 6 8.8714 1.6334 2.8051 23 6 10.1978 1.5055 3.5090 24 6 8.2656 0.5021 2.2093 25 8 8.8068 -0.5929 2.2570 26 6 7.0203 0.6642 1.5576 27 6 6.3400 -0.5143 0.9102 28 1 -0.3632 0.5899 0.8416 29 1 -0.3633 0.4339 -0.9315 30 1 -0.3633 -1.0237 0.0902 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.2669 1.8432 -1.9028 34 1 2.0399 3.1987 -1.0465 35 1 3.0561 3.6686 -4.5545 36 1 4.2432 1.0633 2.4804 37 1 5.1053 1.4795 -0.0852 38 1 4.9819 3.1235 0.5860 39 1 8.7041 3.6975 3.1882 40 1 11.0050 1.6779 2.7971 41 1 10.2565 2.2421 4.3103 42 1 10.2912 0.5039 3.9287 43 1 6.6633 -0.5955 -0.1276 44 1 6.6048 -1.4260 1.4457 45 1 5.2595 -0.3739 0.9441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364983119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:37 Heat of formation + Delta-G solvation = -90.930157 kcal Electronic energy + Delta-G solvation = -29497.133259 eV Core-core repulsion = 25448.577266 eV Total energy + Delta-G solvation = -4048.555994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17298 -37.78028 -36.82525 -36.19250 -35.79664 -35.37017 -33.09323 -32.81964 -32.40887 -30.01768 -28.31025 -27.04217 -26.75468 -25.26656 -23.25960 -22.56260 -21.79618 -21.09916 -19.11135 -18.22598 -17.78281 -17.18861 -16.99655 -16.57473 -16.12653 -15.67333 -15.35663 -14.94889 -14.51384 -14.11924 -13.92308 -13.77383 -13.37948 -13.33908 -13.10491 -13.02538 -12.93868 -12.55272 -12.45396 -12.35780 -12.14316 -12.10952 -11.87329 -11.82384 -11.77108 -11.59138 -11.43687 -11.40664 -11.13623 -11.05166 -10.59098 -10.49835 -10.16041 -9.93294 -9.36997 -9.28753 -9.19572 -8.60106 -8.18787 -7.81501 -6.22488 -4.30611 0.94347 1.24268 1.38705 2.75890 3.17498 3.24307 3.26348 3.37669 3.77284 4.00644 4.23121 4.25691 4.50504 4.73958 4.89862 4.98956 5.09880 5.11832 5.30431 5.37452 5.52395 5.56262 5.64244 5.66082 5.71547 5.74586 5.80556 5.93408 5.94443 6.05380 6.11373 6.21941 6.27625 6.40032 6.44335 6.58705 6.62673 6.82295 6.89993 7.03344 7.26641 7.32983 7.54952 7.74018 8.02686 8.20890 8.73192 9.36164 10.85104 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004699 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.646171 B = 5957.241110 C = 7357.779953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.990 5.990 4 C 0.244 3.756 5 C -0.547 4.547 6 H 0.065 0.935 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.785 3.215 14 O -0.994 6.994 15 O -0.976 6.976 16 N -1.128 6.128 17 C 0.151 3.849 18 C 0.151 3.849 19 N -0.577 5.577 20 H 0.422 0.578 21 C 0.134 3.866 22 C -0.265 4.265 23 C -0.082 4.082 24 C 0.399 3.601 25 O -0.527 6.527 26 C -0.234 4.234 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.412 0.588 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -0.433 10.865 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.832 5.832 4 C 0.122 3.878 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 S 2.793 3.207 14 O -0.978 6.978 15 O -0.960 6.960 16 N -0.886 5.886 17 C 0.024 3.976 18 C 0.041 3.959 19 N -0.183 5.183 20 H 0.259 0.741 21 C 0.005 3.995 22 C -0.272 4.272 23 C -0.140 4.140 24 C 0.291 3.709 25 O -0.414 6.414 26 C -0.241 4.241 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.244 0.756 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.181 0.819 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.814 -0.158 11.077 12.511 hybrid contribution 1.080 -0.063 -0.637 1.255 sum 6.894 -0.221 10.440 12.512 Atomic orbital electron populations 1.22184 0.96768 1.01370 1.02470 1.20999 0.93892 0.82628 1.02131 1.57712 1.77578 1.22897 1.25009 1.19218 0.97681 0.91859 0.79039 1.21522 1.03681 1.27532 1.05877 0.91741 1.24916 0.96870 0.94701 0.96985 1.69913 1.35479 1.28580 1.18288 0.86744 0.83816 0.78773 0.79270 1.19959 1.21119 1.19993 1.01808 0.72443 0.73705 0.72760 1.93574 1.66808 1.79529 1.57881 1.93578 1.86342 1.30551 1.85526 1.56171 1.25208 1.68042 1.39201 1.20566 0.80719 1.03307 0.92970 1.20346 0.94517 0.87345 0.93718 1.41141 1.18730 1.11673 1.46709 0.74141 1.21633 0.85323 0.99243 0.93267 1.21079 1.01655 0.94367 1.10103 1.20277 0.92231 1.02830 0.98638 1.17021 0.85576 0.88737 0.79529 1.90744 1.65159 1.27793 1.57700 1.21006 0.99796 0.94796 1.08541 1.20486 0.99626 0.94925 1.00132 0.92590 0.92067 0.92370 0.90104 0.91943 0.94208 0.93048 0.92413 0.75567 0.86310 0.88490 0.81923 0.91921 0.92294 0.91036 0.91261 0.91008 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.21 37.16 0.38 -2.11 16 2 C 0.13 2.04 6.10 -4.04 -0.02 2.02 16 3 N -0.99 -18.18 2.83 -115.66 -0.33 -18.51 16 4 C 0.24 5.47 5.40 -5.20 -0.03 5.44 16 5 C -0.55 -12.75 8.79 -34.44 -0.30 -13.05 16 6 H 0.06 1.40 5.69 -52.48 -0.30 1.10 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -23.65 13.29 55.43 0.74 -22.91 16 9 Si 0.89 19.31 29.54 -169.99 -5.02 14.29 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 S 2.79 48.78 6.08 -107.50 -0.65 48.13 16 14 O -0.99 -18.56 17.31 -57.17 -0.99 -19.55 16 15 O -0.98 -20.11 15.97 -57.17 -0.91 -21.02 16 16 N -1.13 -15.65 5.34 -11.65 -0.06 -15.72 16 17 C 0.15 2.13 5.34 -5.19 -0.03 2.10 16 18 C 0.15 1.91 6.21 -82.04 -0.51 1.40 16 19 N -0.58 -5.52 5.24 -9.34 -0.05 -5.57 16 20 H 0.42 2.94 8.68 -40.82 -0.35 2.58 16 21 C 0.13 1.18 10.81 -17.01 -0.18 1.00 16 22 C -0.26 -3.22 5.89 -104.51 -0.62 -3.83 16 23 C -0.08 -0.84 9.83 36.00 0.35 -0.49 16 24 C 0.40 6.31 6.74 -37.11 -0.25 6.06 16 25 O -0.53 -10.05 16.28 4.70 0.08 -9.97 16 26 C -0.23 -3.40 5.89 -104.51 -0.62 -4.01 16 27 C -0.09 -1.35 9.03 36.00 0.33 -1.02 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16 33 H 0.04 0.95 7.97 -51.93 -0.41 0.53 16 34 H 0.05 1.28 6.87 -51.93 -0.36 0.92 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.41 4.90 8.59 -34.47 -0.30 4.61 16 37 H 0.12 1.87 4.62 -51.93 -0.24 1.63 16 38 H 0.10 1.39 7.54 -51.93 -0.39 0.99 16 39 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.07 0.84 7.66 -51.93 -0.40 0.45 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 45 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -33.21 381.23 -9.43 -42.64 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.38 Total: 7.30 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.60 Total: -4.86 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.30 Total: -62.70 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -1.83 Total: -50.54 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 48.78 SS G_CDS: -0.65 Total: 48.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.21 -9.43 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364983119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.294 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds