Wall clock time and date at job start Wed Apr 1 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47243 * 2 1 4 4 C 1.46497 * 119.99513 * 277.99692 * 3 2 1 5 5 C 1.50701 * 109.47236 * 274.99668 * 4 3 2 6 6 H 1.08004 * 119.99679 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00342 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00399 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46880 * 60.00213 * 9 7 5 11 11 H 1.48499 * 109.47369 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46934 * 300.00518 * 9 7 5 13 13 S 1.65603 * 120.00044 * 97.99474 * 3 2 1 14 14 O 1.42092 * 106.40221 * 329.49431 * 13 3 2 15 15 O 1.42102 * 106.39916 * 196.57585 * 13 3 2 16 16 N 1.65600 * 107.21621 * 83.03626 * 13 3 2 17 17 C 1.46500 * 119.99830 * 66.47165 * 16 13 3 18 18 C 1.50705 * 109.46902 * 162.61869 * 17 16 13 19 19 N 1.35598 * 119.65012 * 259.72698 * 18 17 16 20 20 H 0.97000 * 119.26630 * 0.02562 * 19 18 17 21 21 C 1.35603 * 121.47036 * 179.75585 * 19 18 17 22 22 C 1.35088 * 120.69970 * 0.52305 * 21 19 18 23 23 C 1.50697 * 120.37993 * 179.72344 * 22 21 19 24 24 C 1.41485 * 119.24710 * 359.74147 * 22 21 19 25 25 O 1.22241 * 120.68453 * 180.02562 * 24 22 21 26 26 C 1.35090 * 119.64931 * 79.99892 * 18 17 16 27 27 C 1.50698 * 120.37960 * 359.95831 * 26 18 17 28 28 H 1.09006 * 109.46546 * 305.02643 * 1 2 3 29 29 H 1.08995 * 109.47021 * 65.02289 * 1 2 3 30 30 H 1.09000 * 109.47137 * 185.03318 * 1 2 3 31 31 H 1.08992 * 109.47464 * 239.99721 * 2 1 3 32 32 H 1.09005 * 109.47478 * 119.99727 * 2 1 3 33 33 H 1.08997 * 109.47669 * 34.99890 * 4 3 2 34 34 H 1.08999 * 109.47235 * 155.00222 * 4 3 2 35 35 H 0.97000 * 120.00134 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99880 * 246.19615 * 16 13 3 37 37 H 1.08994 * 109.47257 * 282.61760 * 17 16 13 38 38 H 1.09004 * 109.47241 * 42.62306 * 17 16 13 39 39 H 1.08007 * 119.65226 * 180.26482 * 21 19 18 40 40 H 1.09000 * 109.47067 * 270.02014 * 23 22 21 41 41 H 1.09005 * 109.47408 * 30.02018 * 23 22 21 42 42 H 1.08998 * 109.47218 * 150.01696 * 23 22 21 43 43 H 1.09003 * 109.47445 * 89.99426 * 27 26 18 44 44 H 1.08996 * 109.47164 * 209.99810 * 27 26 18 45 45 H 1.09004 * 109.47148 * 329.99922 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.0961 2.1306 -1.2564 5 6 3.4004 1.8221 -1.9455 6 1 4.1012 1.1361 -1.4929 7 6 3.6991 2.4156 -3.1535 8 7 2.8461 3.2514 -3.7044 9 14 5.3162 2.0338 -4.0073 10 1 5.3932 0.5787 -4.2937 11 1 5.3955 2.7942 -5.2803 12 1 6.4456 2.4253 -3.1261 13 16 2.4825 2.0955 1.4202 14 8 1.6868 1.5108 2.4421 15 8 2.5233 3.4939 1.1714 16 7 4.0430 1.6275 1.7171 17 6 5.1218 2.0705 0.8305 18 6 6.4479 1.8874 1.5227 19 7 7.0566 2.9533 2.0990 20 1 6.6287 3.8228 2.0584 21 6 8.2475 2.8296 2.7356 22 6 8.8714 1.6334 2.8051 23 6 10.1978 1.5055 3.5090 24 6 8.2656 0.5021 2.2093 25 8 8.8068 -0.5929 2.2570 26 6 7.0203 0.6642 1.5576 27 6 6.3400 -0.5143 0.9102 28 1 -0.3632 0.5899 0.8416 29 1 -0.3633 0.4339 -0.9315 30 1 -0.3633 -1.0237 0.0902 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.2669 1.8432 -1.9028 34 1 2.0399 3.1987 -1.0465 35 1 3.0561 3.6686 -4.5545 36 1 4.2432 1.0633 2.4804 37 1 5.1053 1.4795 -0.0852 38 1 4.9819 3.1235 0.5860 39 1 8.7041 3.6975 3.1882 40 1 11.0050 1.6779 2.7971 41 1 10.2565 2.2421 4.3103 42 1 10.2912 0.5039 3.9287 43 1 6.6633 -0.5955 -0.1276 44 1 6.6048 -1.4260 1.4457 45 1 5.2595 -0.3739 0.9441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364983119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:36 Heat of formation + Delta-G solvation = -115.481593 kcal Electronic energy + Delta-G solvation = -29498.197890 eV Core-core repulsion = 25448.577266 eV Total energy + Delta-G solvation = -4049.620624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16777 -38.90028 -38.32302 -37.67494 -36.92962 -36.89383 -34.64591 -34.10487 -33.46494 -31.48416 -29.34269 -28.46678 -28.07084 -26.26537 -24.91963 -23.60590 -23.23142 -22.09074 -20.48699 -19.23759 -18.92411 -18.58200 -18.47561 -18.09408 -17.46804 -16.95716 -16.67058 -16.25904 -15.93720 -15.44571 -15.11706 -14.88346 -14.71758 -14.65657 -14.33178 -14.08557 -13.91311 -13.73292 -13.64103 -13.60042 -13.43646 -13.38041 -13.30934 -13.14514 -13.12652 -13.00240 -12.75975 -12.71557 -12.65324 -12.55561 -12.21513 -12.08122 -11.76856 -11.51885 -10.65411 -10.50845 -10.37452 -10.18805 -9.75900 -8.85745 -8.12800 -6.25299 -0.41397 0.19909 0.39323 1.45454 1.49184 1.53347 1.85220 2.03311 2.44196 2.57934 2.74015 3.15555 3.21202 3.48747 3.68859 3.85354 3.97660 3.99205 4.15600 4.29900 4.46713 4.50645 4.56830 4.61530 4.69661 4.72284 4.76667 4.77678 4.79089 4.89667 5.03628 5.20368 5.23413 5.25703 5.33996 5.34621 5.46395 5.49291 5.59399 5.81678 5.84201 5.87343 6.08107 6.13114 6.16013 6.87332 7.13414 7.45007 8.95045 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004699 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.646171 B = 5957.241110 C = 7357.779953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.994 5.994 4 C 0.259 3.741 5 C -0.539 4.539 6 H 0.082 0.918 7 C 0.022 3.978 8 N -0.925 5.925 9 Si 0.940 3.060 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.261 1.261 13 S 2.803 3.197 14 O -1.002 7.002 15 O -1.006 7.006 16 N -1.111 6.111 17 C 0.151 3.849 18 C 0.166 3.834 19 N -0.560 5.560 20 H 0.439 0.561 21 C 0.167 3.833 22 C -0.294 4.294 23 C -0.078 4.078 24 C 0.377 3.623 25 O -0.584 6.584 26 C -0.254 4.254 27 C -0.093 4.093 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.424 0.576 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 0.536 12.251 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.835 5.835 4 C 0.135 3.865 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.178 4.178 8 N -0.565 5.565 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.186 1.186 13 S 2.811 3.189 14 O -0.986 6.986 15 O -0.990 6.990 16 N -0.873 5.873 17 C 0.024 3.976 18 C 0.054 3.946 19 N -0.166 5.166 20 H 0.279 0.721 21 C 0.038 3.962 22 C -0.301 4.301 23 C -0.135 4.135 24 C 0.274 3.726 25 O -0.476 6.476 26 C -0.262 4.262 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.238 0.762 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.928 0.826 12.495 14.311 hybrid contribution 0.658 -0.311 -1.008 1.244 sum 7.586 0.514 11.486 13.775 Atomic orbital electron populations 1.22174 0.96076 1.02992 1.01389 1.21263 0.94624 0.81267 1.03361 1.57623 1.78344 1.23835 1.23736 1.18762 0.96784 0.90706 0.80218 1.21875 1.03937 1.26609 1.05397 0.90053 1.25615 0.99480 0.94775 0.97934 1.70041 1.37382 1.30277 1.18772 0.85881 0.80946 0.78423 0.78154 1.19678 1.21871 1.18604 1.01132 0.72811 0.72855 0.72135 1.93560 1.67663 1.79492 1.57924 1.93540 1.86973 1.32647 1.85856 1.55751 1.23942 1.68045 1.39522 1.20493 0.81296 1.03113 0.92650 1.20003 0.93704 0.87600 0.93327 1.41306 1.18756 1.11648 1.44917 0.72050 1.22342 0.83661 0.99832 0.90378 1.21173 1.03037 0.94355 1.11517 1.20269 0.91364 1.02429 0.99470 1.17579 0.85978 0.89330 0.79734 1.90711 1.66609 1.29750 1.60532 1.21015 1.00089 0.95527 1.09598 1.20438 1.00162 0.94860 0.99525 0.93471 0.93321 0.89428 0.90034 0.89508 0.96195 0.95841 0.92720 0.74052 0.87703 0.88280 0.76181 0.91767 0.88700 0.93700 0.92064 0.92149 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 10.21 71.98 0.74 -4.00 16 2 C 0.12 3.62 6.10 86.38 0.53 4.14 16 3 N -0.99 -35.87 2.83 -519.84 -1.47 -37.34 16 4 C 0.26 11.70 5.40 85.63 0.46 12.16 16 5 C -0.54 -24.86 8.79 25.60 0.23 -24.64 16 6 H 0.08 3.41 5.69 -2.91 -0.02 3.40 16 7 C 0.02 1.09 5.46 84.65 0.46 1.56 16 8 N -0.93 -50.09 13.29 21.45 0.28 -49.81 16 9 Si 0.94 39.11 29.54 68.60 2.03 41.13 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 S 2.80 94.75 6.08 -56.49 -0.34 94.41 16 14 O -1.00 -35.74 17.31 -128.00 -2.22 -37.96 16 15 O -1.01 -40.76 15.97 -128.00 -2.04 -42.81 16 16 N -1.11 -28.65 5.34 -190.79 -1.02 -29.67 16 17 C 0.15 3.95 5.34 85.63 0.46 4.41 16 18 C 0.17 3.81 6.21 41.25 0.26 4.06 16 19 N -0.56 -8.43 5.24 -183.47 -0.96 -9.40 16 20 H 0.44 3.99 8.68 -92.71 -0.80 3.19 16 21 C 0.17 2.17 10.81 83.38 0.90 3.07 16 22 C -0.29 -6.48 5.89 -19.79 -0.12 -6.60 16 23 C -0.08 -1.43 9.83 71.23 0.70 -0.73 16 24 C 0.38 11.85 6.74 23.87 0.16 12.01 16 25 O -0.58 -23.24 16.28 -6.11 -0.10 -23.33 16 26 C -0.25 -7.18 5.89 -19.79 -0.12 -7.29 16 27 C -0.09 -2.63 9.03 71.24 0.64 -1.99 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.48 8.00 -2.39 -0.02 1.46 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 32 H 0.09 2.19 7.70 -2.38 -0.02 2.17 16 33 H 0.02 0.97 7.97 -2.39 -0.02 0.96 16 34 H 0.02 1.20 6.87 -2.39 -0.02 1.18 16 35 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.42 9.11 8.59 -96.75 -0.83 8.28 16 37 H 0.11 3.12 4.62 -2.39 -0.01 3.11 16 38 H 0.10 2.61 7.54 -2.38 -0.02 2.59 16 39 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.00 8.08 -2.38 -0.02 0.98 16 42 H 0.04 1.06 7.66 -2.39 -0.02 1.04 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.82 7.66 -2.39 -0.02 1.80 16 45 H 0.08 2.05 6.19 -2.38 -0.01 2.03 16 Total: -1.00 -75.01 381.23 -1.14 -76.15 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.59 Total: 22.47 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.30 Total: -3.85 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -3.17 Total: -126.21 kcal Atomic # 8 Polarization: -99.74 SS G_CDS: -4.36 Total: -104.10 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: 94.75 SS G_CDS: -0.34 Total: 94.41 kcal Total: -75.01 -1.14 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364983119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.328 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds