Wall clock time and date at job start Wed Apr 1 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21301 * 120.00096 * 2 1 4 4 C 1.46769 * 119.99686 * 180.02562 * 2 1 3 5 5 C 1.37991 * 125.91558 * 180.25361 * 4 2 1 6 6 N 1.34707 * 106.65010 * 180.17788 * 5 4 2 7 7 C 1.46503 * 126.51954 * 179.89184 * 6 5 4 8 8 C 1.50696 * 109.47410 * 124.71377 * 7 6 5 9 9 O 1.21289 * 119.99762 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 12 12 C 1.50704 * 109.47158 * 270.00187 * 11 10 8 13 13 H 1.08004 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46674 * 60.00066 * 16 14 12 18 18 H 1.48497 * 109.47212 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46802 * 300.00442 * 16 14 12 20 20 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 10 8 22 22 C 1.38668 * 120.41699 * 269.72232 * 21 20 10 23 23 C 1.38633 * 118.42041 * 179.78557 * 22 21 20 24 24 C 1.38224 * 119.15591 * 0.51099 * 23 22 21 25 25 N 1.31860 * 120.76804 * 359.72581 * 24 23 22 26 26 C 1.31892 * 121.72207 * 0.02562 * 25 24 23 27 27 N 1.40157 * 106.95967 * 359.63113 * 6 5 4 28 28 N 1.28712 * 108.67585 * 0.23610 * 27 6 5 29 29 H 1.09001 * 109.46574 * 269.99596 * 1 2 3 30 30 H 1.08996 * 109.47009 * 29.99380 * 1 2 3 31 31 H 1.09001 * 109.47178 * 149.99877 * 1 2 3 32 32 H 1.07998 * 126.67184 * 0.05861 * 5 4 2 33 33 H 1.09003 * 109.47115 * 4.70835 * 7 6 5 34 34 H 1.09003 * 109.46549 * 244.71671 * 7 6 5 35 35 H 1.08997 * 109.46694 * 29.99578 * 11 10 8 36 36 H 1.08995 * 109.47258 * 149.99854 * 11 10 8 37 37 H 0.96996 * 120.00505 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47060 * 210.00357 * 20 10 8 39 39 H 1.09004 * 109.47073 * 329.99846 * 20 10 8 40 40 H 1.08000 * 120.79413 * 0.02562 * 22 21 20 41 41 H 1.07992 * 120.42251 * 180.21754 * 23 22 21 42 42 H 1.07998 * 119.61684 * 179.75282 * 24 23 22 43 43 H 1.07992 * 119.61024 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 3.6134 -1.4134 0.0043 6 7 3.8642 -2.7369 -0.0023 7 6 5.1834 -3.3742 -0.0027 8 6 5.2811 -4.3276 1.1603 9 8 4.3411 -4.4619 1.9150 10 7 6.4125 -5.0318 1.3612 11 6 7.5477 -4.8700 0.4494 12 6 7.4304 -5.8614 -0.6796 13 1 6.5941 -6.5439 -0.7142 14 6 8.3906 -5.8970 -1.6683 15 7 9.4087 -5.0655 -1.6265 16 14 8.2456 -7.1263 -3.0674 17 1 6.9792 -6.8887 -3.8056 18 1 9.3962 -6.9622 -3.9917 19 1 8.2463 -8.5053 -2.5167 20 6 6.5073 -5.9590 2.4915 21 6 6.0332 -7.3238 2.0628 22 6 4.6988 -7.6771 2.1953 23 6 4.3071 -8.9416 1.7835 24 6 5.2549 -9.8058 1.2683 25 7 6.5165 -9.4374 1.1617 26 6 6.9238 -8.2409 1.5386 27 7 2.6232 -3.3882 -0.0025 28 7 1.6916 -2.5001 -0.0015 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 4.3443 -0.6183 0.0101 33 1 5.9559 -2.6105 0.0876 34 1 5.3216 -3.9225 -0.9346 35 1 7.5477 -3.8577 0.0454 36 1 8.4769 -5.0450 0.9915 37 1 10.0841 -5.0903 -2.3223 38 1 7.5435 -6.0221 2.8239 39 1 5.8844 -5.5986 3.3103 40 1 3.9810 -6.9824 2.6057 41 1 3.2754 -9.2493 1.8687 42 1 4.9587 -10.7940 0.9491 43 1 7.9655 -7.9751 1.4363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411962619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:28 Heat of formation + Delta-G solvation = 47.852140 kcal Electronic energy + Delta-G solvation = -29528.125470 eV Core-core repulsion = 25382.436328 eV Total energy + Delta-G solvation = -4145.689142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17638 -41.37115 -40.46575 -39.97966 -37.03019 -35.70218 -34.75484 -33.57376 -32.58383 -32.33668 -30.95695 -29.57858 -29.29415 -27.03959 -24.97645 -24.52732 -24.36875 -23.68557 -22.85546 -21.30112 -20.03309 -18.77693 -18.54300 -18.15178 -17.93151 -17.22447 -17.10646 -16.85123 -16.63675 -16.41997 -16.22818 -16.08598 -15.77807 -15.41230 -15.28091 -14.71286 -14.50409 -14.41211 -14.12233 -13.94288 -13.66992 -13.51076 -13.23900 -13.17065 -13.03595 -12.99122 -12.93153 -12.73275 -12.43215 -12.37003 -12.08833 -11.75780 -11.72978 -11.00468 -10.95484 -10.69044 -10.56567 -10.41700 -10.29930 -9.90049 -9.55930 -8.22499 -6.31697 -0.00741 0.18755 0.39633 0.42912 0.93933 1.36820 1.42005 1.45100 1.52822 1.94373 2.18467 2.39613 2.88943 2.97714 3.11650 3.30363 3.40564 3.59576 3.62958 3.82133 3.93753 3.95877 4.11136 4.15470 4.17208 4.19046 4.37906 4.46739 4.56072 4.64893 4.69469 4.74961 4.81736 4.86657 4.92700 5.15359 5.22547 5.23253 5.28229 5.39935 5.62248 5.74843 5.83753 6.03938 6.37356 6.41413 6.77973 6.96314 7.09160 7.10667 7.40299 8.82428 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.003525 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.206487 B = 7941.906180 C = 9406.498794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.452 3.548 3 O -0.490 6.490 4 C -0.160 4.160 5 C 0.102 3.898 6 N -0.339 5.339 7 C 0.105 3.895 8 C 0.507 3.493 9 O -0.565 6.565 10 N -0.583 5.583 11 C 0.245 3.755 12 C -0.530 4.530 13 H 0.043 0.957 14 C 0.043 3.957 15 N -0.908 5.908 16 Si 0.926 3.074 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.165 3.835 21 C -0.151 4.151 22 C -0.065 4.065 23 C -0.178 4.178 24 C 0.086 3.914 25 N -0.518 5.518 26 C 0.123 3.877 27 N -0.076 5.076 28 N -0.210 5.210 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.167 0.833 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 4.188 5.444 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.330 3.670 3 O -0.365 6.365 4 C -0.297 4.297 5 C -0.056 4.056 6 N -0.122 5.122 7 C -0.019 4.019 8 C 0.293 3.707 9 O -0.445 6.445 10 N -0.313 5.313 11 C 0.125 3.875 12 C -0.569 4.569 13 H 0.062 0.938 14 C -0.159 4.159 15 N -0.547 5.547 16 Si 0.754 3.246 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.042 3.958 21 C -0.154 4.154 22 C -0.092 4.092 23 C -0.198 4.198 24 C -0.071 4.071 25 N -0.227 5.227 26 C -0.034 4.034 27 N -0.057 5.057 28 N -0.085 5.085 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.254 0.746 33 H 0.185 0.815 34 H 0.150 0.850 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.176 0.824 42 H 0.195 0.805 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.209 2.752 5.390 11.019 hybrid contribution 0.433 0.327 -0.772 0.944 sum -8.776 3.079 4.617 10.384 Atomic orbital electron populations 1.22116 0.89955 1.05889 1.06098 1.21652 0.92830 0.83732 0.68785 1.90559 1.73080 1.33490 1.39368 1.22798 0.91992 0.95196 1.19722 1.24582 0.98777 0.87012 0.95220 1.50099 1.08510 1.05799 1.47752 1.22105 0.79505 0.99453 1.00834 1.20353 0.82600 0.81968 0.85735 1.90698 1.37610 1.68282 1.47880 1.48157 1.14927 1.39477 1.28769 1.19343 0.83631 0.97213 0.87342 1.21439 1.08323 1.19049 1.08077 0.93827 1.25222 0.95019 0.96466 0.99208 1.69913 1.12166 1.37498 1.35134 0.86098 0.77432 0.80536 0.80539 1.20525 1.20755 1.20829 1.20279 1.02900 0.84371 0.88216 1.21211 0.94855 0.97669 1.01686 1.21697 0.95330 0.96353 0.95811 1.22377 1.02192 0.94453 1.00767 1.23208 0.88083 1.00780 0.95046 1.67687 1.19430 1.18951 1.16662 1.22648 1.00341 0.88362 0.92043 1.82107 0.84133 1.17149 1.22276 1.74628 1.24766 0.99176 1.09895 0.86860 0.87811 0.88819 0.74558 0.81525 0.84983 0.93572 0.94496 0.92353 0.87881 0.89265 0.85072 0.82411 0.80515 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 10.15 71.24 0.72 -2.19 16 2 C 0.45 10.42 7.24 27.92 0.20 10.62 16 3 O -0.49 -13.18 17.62 -3.10 -0.05 -13.23 16 4 C -0.16 -4.30 6.95 40.89 0.28 -4.01 16 5 C 0.10 2.51 11.34 84.19 0.95 3.46 16 6 N -0.34 -10.11 3.40 -349.71 -1.19 -11.30 16 7 C 0.10 3.00 5.57 85.63 0.48 3.48 16 8 C 0.51 17.25 7.71 87.66 0.68 17.93 16 9 O -0.56 -21.81 14.96 -3.06 -0.05 -21.86 16 10 N -0.58 -19.71 2.44 -830.48 -2.03 -21.74 16 11 C 0.24 9.31 5.01 85.63 0.43 9.73 16 12 C -0.53 -23.75 8.73 25.60 0.22 -23.52 16 13 H 0.04 2.12 7.58 -2.91 -0.02 2.10 16 14 C 0.04 2.02 5.46 84.65 0.46 2.48 16 15 N -0.91 -44.54 13.29 21.44 0.28 -44.26 16 16 Si 0.93 40.37 29.54 68.60 2.03 42.40 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.17 5.07 5.60 85.63 0.48 5.55 16 21 C -0.15 -4.99 5.48 -19.78 -0.11 -5.10 16 22 C -0.07 -2.05 9.86 22.47 0.22 -1.83 16 23 C -0.18 -4.94 10.11 22.36 0.23 -4.71 16 24 C 0.09 2.52 11.18 84.69 0.95 3.46 16 25 N -0.52 -18.54 10.36 -195.85 -2.03 -20.57 16 26 C 0.12 4.37 10.08 84.67 0.85 5.23 16 27 N -0.08 -2.69 12.85 37.02 0.48 -2.22 16 28 N -0.21 -6.69 12.04 -49.61 -0.60 -7.29 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.49 7.90 -2.39 -0.02 1.47 16 32 H 0.24 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.17 3.53 7.34 -2.39 -0.02 3.51 16 34 H 0.13 4.11 8.00 -2.39 -0.02 4.09 16 35 H 0.05 1.69 6.44 -2.39 -0.02 1.68 16 36 H 0.04 1.48 7.89 -2.39 -0.02 1.46 16 37 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 38 H 0.10 2.80 7.85 -2.39 -0.02 2.78 16 39 H 0.09 2.63 7.37 -2.38 -0.02 2.62 16 40 H 0.13 4.18 7.71 -2.91 -0.02 4.16 16 41 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 42 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.15 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -64.46 383.20 4.94 -59.52 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.05 Total: 19.95 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 7.05 Total: 20.58 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -5.08 Total: -107.37 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.10 Total: -35.09 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -64.46 4.94 -59.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411962619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.376 kcal (2) G-P(sol) polarization free energy of solvation -64.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds