Wall clock time and date at job start Wed Apr 1 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47040 * 2 1 4 4 C 1.52992 * 109.47095 * 239.99785 * 2 1 3 5 5 N 1.46503 * 109.47153 * 185.00026 * 4 2 1 6 6 C 1.34773 * 120.00058 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99897 * 180.02562 * 6 5 4 9 9 H 1.08992 * 110.54244 * 61.15777 * 8 6 5 10 10 C 1.54628 * 110.48573 * 183.77065 * 8 6 5 11 11 C 1.54663 * 101.68539 * 93.66303 * 10 8 6 12 12 N 1.46766 * 105.38117 * 25.77156 * 11 10 8 13 13 C 1.34426 * 111.29916 * 342.58270 * 12 11 10 14 14 O 1.21278 * 124.94275 * 180.69504 * 13 12 11 15 15 N 1.46499 * 109.46866 * 119.99804 * 2 1 3 16 16 C 1.46496 * 120.00121 * 60.00250 * 15 2 1 17 17 C 1.34777 * 119.99911 * 239.99812 * 15 2 1 18 18 O 1.21286 * 119.99990 * 0.02562 * 17 15 2 19 19 C 1.50697 * 119.99915 * 180.02562 * 17 15 2 20 20 S 1.81008 * 109.47038 * 180.02562 * 19 17 15 21 21 C 1.76203 * 99.99812 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00556 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99948 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99533 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46945 * 90.00676 * 25 23 21 27 27 H 1.48502 * 109.46757 * 209.99760 * 25 23 21 28 28 H 1.48492 * 109.47204 * 329.99949 * 25 23 21 29 29 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.46819 * 59.99911 * 1 2 3 32 32 H 1.08998 * 109.47318 * 65.00148 * 4 2 1 33 33 H 1.08997 * 109.47370 * 304.99880 * 4 2 1 34 34 H 0.96999 * 120.00171 * 0.02562 * 5 4 2 35 35 H 1.09002 * 110.97177 * 211.99532 * 10 8 6 36 36 H 1.08994 * 110.97175 * 335.72526 * 10 8 6 37 37 H 1.08999 * 110.40049 * 266.74034 * 11 10 8 38 38 H 1.09001 * 110.18102 * 144.67906 * 11 10 8 39 39 H 0.97001 * 124.35394 * 162.85956 * 12 11 10 40 40 H 1.09005 * 109.47151 * 89.99889 * 16 15 2 41 41 H 1.09003 * 109.47210 * 209.99796 * 16 15 2 42 42 H 1.09002 * 109.47435 * 329.99861 * 16 15 2 43 43 H 1.08993 * 109.47404 * 299.99976 * 19 17 15 44 44 H 1.09000 * 109.47199 * 60.00482 * 19 17 15 45 45 H 0.97004 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1910 7 8 3.5701 -1.8834 -3.1398 8 6 5.6750 -1.5370 -2.1304 9 1 5.9817 -2.1156 -1.2592 10 6 6.2240 -2.1776 -3.4262 11 6 6.5497 -0.9292 -4.2792 12 7 6.7937 0.1490 -3.3138 13 6 6.3046 -0.1616 -2.1009 14 8 6.3597 0.5563 -1.1249 15 7 2.0183 -0.6906 1.1962 16 6 1.6644 -2.0931 1.4281 17 6 2.7932 -0.0356 2.0833 18 8 3.0859 1.1257 1.8916 19 6 3.2959 -0.7461 3.3135 20 16 4.3008 0.3919 4.2992 21 6 4.7447 -0.6695 5.6338 22 1 4.3948 -1.6910 5.6508 23 6 5.5434 -0.1923 6.6639 24 7 5.8746 -0.9850 7.6612 25 14 6.1481 1.5749 6.6349 26 1 5.1648 2.4460 7.3274 27 1 7.4591 1.6608 7.3271 28 1 6.3012 2.0226 5.2274 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 7.1220 -2.7611 -3.2228 36 1 5.4641 -2.7908 -3.9105 37 1 5.7058 -0.6769 -4.9212 38 1 7.4418 -1.1065 -4.8799 39 1 7.2460 0.9807 -3.5249 40 1 2.4158 -2.7377 0.9718 41 1 1.6238 -2.2851 2.5003 42 1 0.6904 -2.3002 0.9847 43 1 2.4484 -1.0890 3.9070 44 1 3.9017 -1.6022 3.0166 45 1 6.4330 -0.6516 8.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486950661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:08 Heat of formation + Delta-G solvation = -102.929236 kcal Electronic energy + Delta-G solvation = -28416.619626 eV Core-core repulsion = 24367.543313 eV Total energy + Delta-G solvation = -4049.076313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23877 -40.00410 -38.94139 -36.83183 -36.36659 -34.36423 -32.43202 -32.37156 -31.67532 -28.90125 -28.45043 -26.97746 -26.31980 -25.59977 -22.78406 -21.87216 -21.66111 -20.19103 -19.21915 -17.94136 -17.75390 -17.70056 -17.05747 -16.44953 -16.03196 -15.81212 -15.52735 -15.15992 -14.97830 -14.81585 -14.19105 -13.99461 -13.89761 -13.83058 -13.47033 -13.29257 -13.18599 -13.11459 -12.87132 -12.77275 -12.43608 -12.38005 -12.10430 -11.99145 -11.82464 -11.70770 -11.24051 -11.16246 -10.99132 -10.57668 -10.37950 -10.05413 -9.84163 -9.52964 -9.44586 -9.30006 -8.98829 -8.71187 -8.46775 -6.89776 -6.27758 -3.99048 2.03741 2.37103 2.65728 2.87590 2.90045 3.09169 3.18782 3.34844 3.53724 3.59912 3.91980 4.02477 4.34747 4.37453 4.40319 4.60229 4.67628 4.74566 4.84902 4.98490 4.99688 5.08140 5.11549 5.17524 5.19588 5.26640 5.37072 5.37942 5.44905 5.48354 5.60786 5.64539 5.76246 5.82348 5.93040 6.00057 6.15870 6.40307 6.51539 6.64130 7.22017 7.36117 7.86594 7.92359 7.95233 8.38064 8.42343 9.18796 10.81429 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.003365 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.235721 B = 8318.814603 C = 9932.127073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.716 5.716 6 C 0.534 3.466 7 O -0.537 6.537 8 C -0.154 4.154 9 H 0.136 0.864 10 C -0.119 4.119 11 C 0.100 3.900 12 N -0.730 5.730 13 C 0.525 3.475 14 O -0.505 6.505 15 N -0.619 5.619 16 C 0.077 3.923 17 C 0.530 3.470 18 O -0.512 6.512 19 C -0.121 4.121 20 S -0.140 6.140 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.855 3.145 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.234 1.234 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.414 0.586 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -4.185 -25.289 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.127 0.873 4 C -0.013 4.013 5 N -0.367 5.367 6 C 0.318 3.682 7 O -0.414 6.414 8 C -0.179 4.179 9 H 0.153 0.847 10 C -0.157 4.157 11 C -0.025 4.025 12 N -0.387 5.387 13 C 0.308 3.692 14 O -0.379 6.379 15 N -0.356 5.356 16 C -0.067 4.067 17 C 0.317 3.683 18 O -0.386 6.386 19 C -0.271 4.271 20 S 0.086 5.914 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.680 3.320 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.158 1.158 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.313 -2.532 -25.501 26.171 hybrid contribution 0.453 -0.384 0.795 0.992 sum -4.860 -2.916 -24.706 25.348 Atomic orbital electron populations 1.22054 0.93643 1.02709 1.03144 1.21295 0.94914 0.98619 0.83323 0.87264 1.21787 0.79887 1.01502 0.98113 1.45975 1.07994 1.58773 1.24004 1.19698 0.88243 0.77863 0.82356 1.90683 1.69484 1.48128 1.33145 1.22182 0.94082 0.97880 1.03759 0.84675 1.22638 1.02705 0.97274 0.93052 1.22164 1.01982 0.86450 0.91857 1.46154 1.60277 1.21330 1.10901 1.20329 0.78147 0.87577 0.83142 1.90909 1.57026 1.55132 1.34799 1.47916 1.52227 1.12722 1.22721 1.21791 1.00737 0.81282 1.02853 1.20408 0.77250 0.86861 0.83739 1.90723 1.56059 1.16366 1.75459 1.23307 1.03647 1.03429 0.96735 1.84860 1.63021 1.18850 1.24655 1.22310 1.37556 1.00290 1.06685 0.89425 1.24698 0.94418 0.98086 0.94015 1.69935 1.35773 1.36034 1.10007 0.86756 0.79135 0.84724 0.81404 1.19232 1.19942 1.15816 0.91894 0.91310 0.91147 0.90400 0.90830 0.75062 0.89030 0.87232 0.90592 0.89818 0.74703 0.92700 0.90368 0.91018 0.88520 0.88537 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.17 37.16 0.34 -0.95 16 2 C 0.12 1.34 2.80 -67.93 -0.19 1.14 16 3 H 0.11 1.46 6.90 -51.93 -0.36 1.10 16 4 C 0.11 1.14 4.97 -4.04 -0.02 1.12 16 5 N -0.72 -8.59 5.32 -60.30 -0.32 -8.91 16 6 C 0.53 6.25 7.19 -10.99 -0.08 6.17 16 7 O -0.54 -7.06 15.46 5.56 0.09 -6.97 16 8 C -0.15 -1.53 3.33 -91.78 -0.31 -1.84 16 9 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 10 C -0.12 -0.80 6.54 -25.00 -0.16 -0.96 16 11 C 0.10 0.60 7.78 -3.02 -0.02 0.58 16 12 N -0.73 -6.25 6.24 -59.10 -0.37 -6.62 16 13 C 0.52 6.39 7.65 -10.86 -0.08 6.31 16 14 O -0.51 -8.60 17.85 5.56 0.10 -8.50 16 15 N -0.62 -7.78 2.24 -173.93 -0.39 -8.17 16 16 C 0.08 0.73 9.40 59.84 0.56 1.29 16 17 C 0.53 9.27 7.40 -10.99 -0.08 9.19 16 18 O -0.51 -10.88 15.19 5.55 0.08 -10.79 16 19 C -0.12 -2.32 4.71 36.00 0.17 -2.15 16 20 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 21 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 24 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 25 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.23 -6.08 6.74 56.52 0.38 -5.70 16 29 H 0.06 0.43 6.66 -51.93 -0.35 0.09 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 34 H 0.41 5.80 7.65 -40.82 -0.31 5.49 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.78 6.91 -51.93 -0.36 0.42 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 42 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 43 H 0.10 1.73 7.40 -51.92 -0.38 1.34 16 44 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -37.52 384.76 -7.19 -44.71 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.58 Total: 5.66 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.34 Total: 7.93 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.30 Total: -49.59 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.27 Total: -26.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.52 -7.19 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486950661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.221 kcal (2) G-P(sol) polarization free energy of solvation -37.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds