Wall clock time and date at job start Wed Apr 1 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47040 * 2 1 4 4 C 1.52992 * 109.47095 * 239.99785 * 2 1 3 5 5 N 1.46503 * 109.47153 * 185.00026 * 4 2 1 6 6 C 1.34773 * 120.00058 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99897 * 180.02562 * 6 5 4 9 9 H 1.08992 * 110.54244 * 61.15777 * 8 6 5 10 10 C 1.54628 * 110.48573 * 183.77065 * 8 6 5 11 11 C 1.54663 * 101.68539 * 93.66303 * 10 8 6 12 12 N 1.46766 * 105.38117 * 25.77156 * 11 10 8 13 13 C 1.34426 * 111.29916 * 342.58270 * 12 11 10 14 14 O 1.21278 * 124.94275 * 180.69504 * 13 12 11 15 15 N 1.46499 * 109.46866 * 119.99804 * 2 1 3 16 16 C 1.46496 * 120.00121 * 60.00250 * 15 2 1 17 17 C 1.34777 * 119.99911 * 239.99812 * 15 2 1 18 18 O 1.21286 * 119.99990 * 0.02562 * 17 15 2 19 19 C 1.50697 * 119.99915 * 180.02562 * 17 15 2 20 20 S 1.81008 * 109.47038 * 180.02562 * 19 17 15 21 21 C 1.76203 * 99.99812 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00556 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99948 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99533 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46945 * 90.00676 * 25 23 21 27 27 H 1.48502 * 109.46757 * 209.99760 * 25 23 21 28 28 H 1.48492 * 109.47204 * 329.99949 * 25 23 21 29 29 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47217 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.46819 * 59.99911 * 1 2 3 32 32 H 1.08998 * 109.47318 * 65.00148 * 4 2 1 33 33 H 1.08997 * 109.47370 * 304.99880 * 4 2 1 34 34 H 0.96999 * 120.00171 * 0.02562 * 5 4 2 35 35 H 1.09002 * 110.97177 * 211.99532 * 10 8 6 36 36 H 1.08994 * 110.97175 * 335.72526 * 10 8 6 37 37 H 1.08999 * 110.40049 * 266.74034 * 11 10 8 38 38 H 1.09001 * 110.18102 * 144.67906 * 11 10 8 39 39 H 0.97001 * 124.35394 * 162.85956 * 12 11 10 40 40 H 1.09005 * 109.47151 * 89.99889 * 16 15 2 41 41 H 1.09003 * 109.47210 * 209.99796 * 16 15 2 42 42 H 1.09002 * 109.47435 * 329.99861 * 16 15 2 43 43 H 1.08993 * 109.47404 * 299.99976 * 19 17 15 44 44 H 1.09000 * 109.47199 * 60.00482 * 19 17 15 45 45 H 0.97004 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1910 7 8 3.5701 -1.8834 -3.1398 8 6 5.6750 -1.5370 -2.1304 9 1 5.9817 -2.1156 -1.2592 10 6 6.2240 -2.1776 -3.4262 11 6 6.5497 -0.9292 -4.2792 12 7 6.7937 0.1490 -3.3138 13 6 6.3046 -0.1616 -2.1009 14 8 6.3597 0.5563 -1.1249 15 7 2.0183 -0.6906 1.1962 16 6 1.6644 -2.0931 1.4281 17 6 2.7932 -0.0356 2.0833 18 8 3.0859 1.1257 1.8916 19 6 3.2959 -0.7461 3.3135 20 16 4.3008 0.3919 4.2992 21 6 4.7447 -0.6695 5.6338 22 1 4.3948 -1.6910 5.6508 23 6 5.5434 -0.1923 6.6639 24 7 5.8746 -0.9850 7.6612 25 14 6.1481 1.5749 6.6349 26 1 5.1648 2.4460 7.3274 27 1 7.4591 1.6608 7.3271 28 1 6.3012 2.0226 5.2274 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 7.1220 -2.7611 -3.2228 36 1 5.4641 -2.7908 -3.9105 37 1 5.7058 -0.6769 -4.9212 38 1 7.4418 -1.1065 -4.8799 39 1 7.2460 0.9807 -3.5249 40 1 2.4158 -2.7377 0.9718 41 1 1.6238 -2.2851 2.5003 42 1 0.6904 -2.3002 0.9847 43 1 2.4484 -1.0890 3.9070 44 1 3.9017 -1.6022 3.0166 45 1 6.4330 -0.6516 8.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486950661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:07 Heat of formation + Delta-G solvation = -132.954631 kcal Electronic energy + Delta-G solvation = -28417.921625 eV Core-core repulsion = 24367.543313 eV Total energy + Delta-G solvation = -4050.378312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09346 -41.16905 -39.94032 -37.89153 -37.33815 -35.37937 -34.67761 -33.34210 -32.45853 -30.29679 -29.15168 -27.89896 -27.84413 -27.10151 -23.53938 -22.81314 -22.52240 -21.09561 -20.40297 -19.63786 -18.78402 -18.54162 -18.38561 -17.45225 -17.12906 -16.98677 -16.82675 -16.67524 -16.06203 -16.01901 -15.59718 -14.97878 -14.83690 -14.79544 -14.71589 -14.58913 -14.46175 -14.03272 -13.92735 -13.64034 -13.57799 -13.37112 -13.18360 -13.10062 -13.02018 -12.89163 -12.59867 -12.45957 -12.31400 -11.96639 -11.87333 -11.32414 -11.17910 -11.01566 -10.95421 -10.51434 -10.23466 -10.17809 -9.79211 -8.99993 -8.52455 -6.22423 0.96600 1.11830 1.29167 1.44366 1.47009 1.49608 1.52377 1.96339 2.13448 2.24135 2.36170 2.68886 2.86005 3.19638 3.37455 3.47417 3.57484 3.73213 3.98492 4.03867 4.14097 4.16729 4.18905 4.24417 4.41912 4.47264 4.53733 4.61200 4.65464 4.72700 4.77649 4.88530 4.98718 5.01344 5.08397 5.20580 5.31339 5.53294 5.69182 5.70339 5.87555 6.10620 6.17856 6.25041 6.93386 6.93865 7.05989 7.08065 8.59927 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.003365 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.235721 B = 8318.814603 C = 9932.127073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.722 5.722 6 C 0.534 3.466 7 O -0.550 6.550 8 C -0.156 4.156 9 H 0.140 0.860 10 C -0.111 4.111 11 C 0.097 3.903 12 N -0.718 5.718 13 C 0.516 3.484 14 O -0.566 6.566 15 N -0.602 5.602 16 C 0.067 3.933 17 C 0.531 3.469 18 O -0.558 6.558 19 C -0.105 4.105 20 S -0.180 6.180 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.049 3.951 24 N -0.916 5.916 25 Si 0.910 3.090 26 H -0.261 1.261 27 H -0.258 1.258 28 H -0.241 1.241 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.420 0.580 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -5.215 -27.762 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.372 5.372 6 C 0.319 3.681 7 O -0.429 6.429 8 C -0.181 4.181 9 H 0.158 0.842 10 C -0.149 4.149 11 C -0.026 4.026 12 N -0.373 5.373 13 C 0.300 3.700 14 O -0.445 6.445 15 N -0.337 5.337 16 C -0.074 4.074 17 C 0.319 3.681 18 O -0.436 6.436 19 C -0.256 4.256 20 S 0.047 5.953 21 C -0.673 4.673 22 H 0.082 0.918 23 C -0.157 4.157 24 N -0.554 5.554 25 Si 0.732 3.268 26 H -0.186 1.186 27 H -0.183 1.183 28 H -0.165 1.165 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.237 0.763 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.147 -3.618 -28.050 28.942 hybrid contribution 0.603 -0.186 1.398 1.534 sum -5.544 -3.803 -26.652 27.487 Atomic orbital electron populations 1.22023 0.90932 1.04267 1.03538 1.21414 0.96818 0.97031 0.82714 0.90140 1.21867 0.79039 1.02325 0.97677 1.46140 1.08767 1.58623 1.23716 1.19936 0.88902 0.77360 0.81908 1.90671 1.69965 1.48814 1.33452 1.22261 0.92898 0.96980 1.05919 0.84205 1.22720 1.03481 0.97523 0.91130 1.22418 1.03745 0.85114 0.91299 1.46245 1.58602 1.22120 1.10301 1.20740 0.77957 0.88007 0.83262 1.90874 1.59637 1.56961 1.37020 1.47863 1.50140 1.13765 1.21895 1.22092 1.02823 0.79150 1.03384 1.20066 0.77867 0.86264 0.83924 1.90711 1.58194 1.18210 1.76495 1.23273 1.03211 1.02138 0.96938 1.84830 1.64932 1.20833 1.24701 1.22440 1.37224 0.99793 1.07880 0.91769 1.25493 0.94694 1.01681 0.93815 1.70005 1.36750 1.37797 1.10823 0.85927 0.79397 0.80351 0.81081 1.18597 1.18255 1.16536 0.89676 0.92477 0.89265 0.89703 0.89121 0.76310 0.86688 0.87183 0.90435 0.86327 0.73993 0.91754 0.90436 0.87696 0.86873 0.87236 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.12 2.53 2.80 44.99 0.13 2.66 16 3 H 0.08 2.18 6.90 -2.39 -0.02 2.16 16 4 C 0.11 2.12 4.97 86.38 0.43 2.55 16 5 N -0.72 -16.85 5.32 -463.08 -2.46 -19.32 16 6 C 0.53 11.91 7.19 87.66 0.63 12.54 16 7 O -0.55 -13.45 15.46 -3.02 -0.05 -13.50 16 8 C -0.16 -2.95 3.33 -11.55 -0.04 -2.99 16 9 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 10 C -0.11 -1.21 6.54 31.72 0.21 -1.01 16 11 C 0.10 0.92 7.78 86.90 0.68 1.59 16 12 N -0.72 -11.44 6.24 -459.48 -2.87 -14.31 16 13 C 0.52 12.56 7.65 87.90 0.67 13.24 16 14 O -0.57 -20.17 17.85 -3.02 -0.05 -20.22 16 15 N -0.60 -14.34 2.24 -822.59 -1.85 -16.19 16 16 C 0.07 1.10 9.40 127.77 1.20 2.30 16 17 C 0.53 18.58 7.40 87.66 0.65 19.23 16 18 O -0.56 -24.36 15.19 -3.05 -0.05 -24.40 16 19 C -0.10 -4.02 4.71 71.23 0.34 -3.69 16 20 S -0.18 -9.31 18.55 -56.49 -1.05 -10.35 16 21 C -0.53 -30.94 10.04 67.96 0.68 -30.25 16 22 H 0.06 3.95 8.03 -2.92 -0.02 3.93 16 23 C 0.05 2.89 5.50 84.86 0.47 3.36 16 24 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 25 Si 0.91 46.07 27.74 68.60 1.90 47.97 16 26 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.24 -12.41 6.74 99.48 0.67 -11.74 16 29 H 0.08 0.81 6.66 -2.39 -0.02 0.80 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.40 7.84 -2.39 -0.02 1.38 16 34 H 0.40 11.48 7.65 -92.71 -0.71 10.77 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.27 6.91 -2.39 -0.02 1.26 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.42 5.59 8.96 -92.71 -0.83 4.76 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.33 6.44 -2.39 -0.02 1.31 16 42 H 0.10 1.07 6.43 -2.39 -0.02 1.06 16 43 H 0.11 3.96 7.40 -2.40 -0.02 3.94 16 44 H 0.11 3.91 8.11 -2.39 -0.02 3.89 16 45 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -84.69 384.76 -0.01 -84.70 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.54 Total: 23.34 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.70 Total: 18.14 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -6.87 Total: -105.67 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -0.15 Total: -58.12 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.05 Total: -10.35 kcal Total: -84.69 -0.01 -84.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486950661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.257 kcal (2) G-P(sol) polarization free energy of solvation -84.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds