Wall clock time and date at job start Wed Apr 1 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 119.99840 * 2 1 4 4 N 1.34770 * 119.99633 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99711 * 180.02562 * 4 2 1 6 6 C 1.50705 * 109.47129 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99851 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00247 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00059 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47153 * 324.99089 * 9 8 6 11 11 C 1.52994 * 109.47820 * 84.99828 * 9 8 6 12 12 C 1.53004 * 109.46930 * 204.99696 * 9 8 6 13 13 C 1.53940 * 113.74473 * 161.99150 * 12 9 8 14 14 N 1.47814 * 86.04054 * 222.08238 * 13 12 9 15 15 C 1.34764 * 134.45709 * 204.64091 * 14 13 12 16 16 O 1.21291 * 120.00109 * 179.86783 * 15 14 13 17 17 C 1.50703 * 120.00549 * 359.87293 * 15 14 13 18 18 S 1.80998 * 109.47492 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00016 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99941 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00080 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99818 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47460 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47182 * 120.00238 * 23 21 19 26 26 H 1.48501 * 109.46885 * 239.99753 * 23 21 19 27 27 C 1.47585 * 91.04769 * 24.54987 * 14 13 12 28 28 H 1.08999 * 109.46681 * 269.99961 * 1 2 3 29 29 H 1.08999 * 109.46548 * 29.99422 * 1 2 3 30 30 H 1.08991 * 109.47257 * 149.99879 * 1 2 3 31 31 H 0.96996 * 120.00871 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47331 * 59.99722 * 5 4 2 33 33 H 1.08997 * 109.47109 * 299.99726 * 5 4 2 34 34 H 0.97004 * 119.99849 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.46689 * 295.80885 * 11 9 8 36 36 H 1.08998 * 109.47346 * 55.80152 * 11 9 8 37 37 H 1.08998 * 109.47724 * 175.80835 * 11 9 8 38 38 H 1.09004 * 112.94491 * 293.58526 * 12 9 8 39 39 H 1.08999 * 113.76889 * 336.35083 * 13 12 9 40 40 H 1.09004 * 113.76780 * 107.74293 * 13 12 9 41 41 H 1.09007 * 109.46633 * 299.99711 * 17 15 14 42 42 H 1.08993 * 109.47149 * 59.99276 * 17 15 14 43 43 H 0.97002 * 119.99806 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.76931 * 221.15338 * 27 14 13 45 45 H 1.09002 * 113.87262 * 89.76514 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5881 -0.0013 7 8 3.3601 -3.5099 -0.0022 8 7 5.4732 -2.8344 -0.0006 9 6 5.9615 -4.2156 -0.0025 10 1 5.2885 -4.8397 0.5854 11 6 6.0142 -4.7361 -1.4402 12 6 7.3636 -4.2617 0.6082 13 6 7.7973 -5.6682 1.0593 14 7 8.3443 -5.0026 2.2604 15 6 9.3145 -5.3027 3.1464 16 8 9.5553 -4.5444 4.0619 17 6 10.1002 -6.5803 2.9997 18 16 11.3190 -6.6955 4.3328 19 6 12.0710 -8.2366 3.9274 20 1 11.7320 -8.7929 3.0659 21 6 13.0990 -8.7357 4.7152 22 7 13.5118 -8.0580 5.7655 23 14 13.8966 -10.3691 4.2850 24 1 13.2554 -10.9278 3.0677 25 1 15.3450 -10.1612 4.0312 26 1 13.7233 -11.3173 5.4147 27 6 7.4035 -3.8771 2.0984 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 4.0089 -0.6540 0.8904 33 1 4.0096 -0.6528 -0.8895 34 1 6.1036 -2.0971 0.0005 35 1 5.0050 -4.7733 -1.8503 36 1 6.6280 -4.0692 -2.0458 37 1 6.4471 -5.7363 -1.4490 38 1 8.1084 -3.7462 0.0019 39 1 6.9640 -6.3386 1.2696 40 1 8.5572 -6.1194 0.4211 41 1 9.4221 -7.4320 3.0532 42 1 10.6122 -6.5834 2.0375 43 1 14.2300 -8.4070 6.3162 44 1 7.8496 -2.9009 2.2883 45 1 6.4537 -4.0184 2.6141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487142072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:02 Heat of formation + Delta-G solvation = -78.395547 kcal Electronic energy + Delta-G solvation = -26363.247006 eV Core-core repulsion = 22315.234554 eV Total energy + Delta-G solvation = -4048.012452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97410 -40.24506 -39.44900 -37.76648 -35.64267 -34.85847 -32.45683 -32.05166 -30.78882 -30.17407 -27.80045 -27.53986 -26.24794 -25.49520 -23.73092 -21.14631 -21.09717 -20.98489 -19.13975 -18.24118 -17.75044 -17.31062 -16.73113 -16.52784 -16.49645 -16.22406 -15.56257 -15.36017 -15.17145 -14.82971 -14.49487 -14.16703 -14.06187 -13.94094 -13.61194 -13.53228 -13.07360 -12.98752 -12.85720 -12.73983 -12.63193 -12.50965 -12.48362 -12.08602 -11.84519 -11.35678 -11.11867 -11.09191 -11.02681 -10.77966 -10.50637 -10.44497 -9.83984 -9.77913 -9.64730 -9.38838 -9.10105 -8.66768 -8.26709 -6.53721 -6.24451 -3.95501 1.99275 2.15118 2.24545 2.67159 2.92042 3.01049 3.19567 3.21873 3.28653 3.51219 3.89320 4.12597 4.17381 4.25554 4.36911 4.51376 4.66510 4.72355 4.74173 4.82665 4.84417 4.92225 4.95819 5.07856 5.10978 5.20952 5.23201 5.28945 5.33358 5.40387 5.48766 5.52604 5.72088 5.76584 5.81836 5.88271 5.94646 5.97025 6.10239 6.86766 6.97161 7.57083 7.57214 7.69568 7.74842 8.32640 8.49144 9.20921 10.83077 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.001599 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.776435 B =17504.368592 C =18076.810055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.720 5.720 5 C 0.097 3.903 6 C 0.512 3.488 7 O -0.537 6.537 8 N -0.718 5.718 9 C 0.152 3.848 10 H 0.096 0.904 11 C -0.163 4.163 12 C -0.136 4.136 13 C 0.115 3.885 14 N -0.652 5.652 15 C 0.556 3.444 16 O -0.514 6.514 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.115 3.885 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.081 0.919 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.787 11.503 -17.736 31.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.377 5.377 5 C -0.031 4.031 6 C 0.298 3.702 7 O -0.413 6.413 8 N -0.370 5.370 9 C 0.047 3.953 10 H 0.114 0.886 11 C -0.222 4.222 12 C -0.155 4.155 13 C -0.009 4.009 14 N -0.391 5.391 15 C 0.345 3.655 16 O -0.388 6.388 17 C -0.296 4.296 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.008 4.008 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.251 0.749 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.249 12.655 -16.047 30.954 hybrid contribution 0.404 -2.069 -1.298 2.475 sum -22.845 10.586 -17.345 30.574 Atomic orbital electron populations 1.21869 0.91006 1.05113 1.05110 1.20867 0.90850 0.82969 0.75272 1.90746 1.70805 1.31406 1.49607 1.45832 1.05875 1.10072 1.75896 1.21076 0.82684 0.94210 1.05113 1.20494 0.82829 0.91047 0.75838 1.90717 1.55110 1.45901 1.49611 1.45941 1.06684 1.09358 1.75012 1.21013 0.94132 0.82591 0.97518 0.88644 1.22165 1.02718 1.01812 0.95477 1.23553 0.96660 0.98787 0.96532 1.23149 0.98054 0.94540 0.85114 1.50030 1.35172 1.24500 1.29382 1.20068 0.78528 0.87252 0.79624 1.90720 1.66519 1.50606 1.30951 1.23476 1.02606 0.96410 1.07083 1.85420 1.37816 1.28931 1.31297 1.22897 1.22674 1.06606 1.16155 0.90862 1.24997 0.95900 0.98189 0.94482 1.70030 1.27224 1.37889 1.15095 0.86106 0.78959 0.81898 0.78467 1.19611 1.20534 1.20541 1.23050 0.92994 0.92300 0.92461 0.88563 0.88643 0.89938 0.74890 0.88115 0.88233 0.75985 0.91920 0.92111 0.90968 0.87169 0.89456 0.89380 0.89330 0.89314 0.92202 0.90018 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.30 36.01 0.37 -0.24 16 2 C 0.51 3.76 7.94 -10.99 -0.09 3.67 16 3 O -0.55 -6.31 17.10 5.56 0.10 -6.22 16 4 N -0.72 -4.43 5.53 -61.47 -0.34 -4.77 16 5 C 0.10 0.53 6.15 -5.19 -0.03 0.50 16 6 C 0.51 3.31 7.86 -10.99 -0.09 3.22 16 7 O -0.54 -5.15 15.33 5.55 0.09 -5.06 16 8 N -0.72 -3.41 4.95 -53.81 -0.27 -3.67 16 9 C 0.15 0.86 2.29 -67.93 -0.16 0.71 16 10 H 0.10 0.69 7.49 -51.93 -0.39 0.31 16 11 C -0.16 -0.86 9.46 37.15 0.35 -0.50 16 12 C -0.14 -0.87 3.35 -89.69 -0.30 -1.17 16 13 C 0.12 0.99 8.01 -2.84 -0.02 0.97 16 14 N -0.65 -8.76 3.61 -178.13 -0.64 -9.41 16 15 C 0.56 10.64 8.08 -10.99 -0.09 10.55 16 16 O -0.51 -12.02 16.59 5.55 0.09 -11.92 16 17 C -0.15 -2.96 5.91 36.01 0.21 -2.75 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.12 1.11 8.28 -2.96 -0.02 1.09 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.41 2.24 7.44 -40.82 -0.30 1.94 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 1.06 8.60 -40.82 -0.35 0.71 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.34 7.99 -51.93 -0.42 -0.08 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -39.52 401.85 -8.00 -47.52 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.91 Total: -2.67 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.34 Total: 3.13 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.52 Total: -43.20 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.27 Total: -23.20 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -39.52 -8.00 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487142072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -39.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds