Wall clock time and date at job start Wed Apr 1 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 119.99840 * 2 1 4 4 N 1.34770 * 119.99633 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99711 * 180.02562 * 4 2 1 6 6 C 1.50705 * 109.47129 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99851 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00247 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00059 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47153 * 324.99089 * 9 8 6 11 11 C 1.52994 * 109.47820 * 84.99828 * 9 8 6 12 12 C 1.53004 * 109.46930 * 204.99696 * 9 8 6 13 13 C 1.53940 * 113.74473 * 161.99150 * 12 9 8 14 14 N 1.47814 * 86.04054 * 222.08238 * 13 12 9 15 15 C 1.34764 * 134.45709 * 204.64091 * 14 13 12 16 16 O 1.21291 * 120.00109 * 179.86783 * 15 14 13 17 17 C 1.50703 * 120.00549 * 359.87293 * 15 14 13 18 18 S 1.80998 * 109.47492 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00016 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99941 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00080 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99818 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47460 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47182 * 120.00238 * 23 21 19 26 26 H 1.48501 * 109.46885 * 239.99753 * 23 21 19 27 27 C 1.47585 * 91.04769 * 24.54987 * 14 13 12 28 28 H 1.08999 * 109.46681 * 269.99961 * 1 2 3 29 29 H 1.08999 * 109.46548 * 29.99422 * 1 2 3 30 30 H 1.08991 * 109.47257 * 149.99879 * 1 2 3 31 31 H 0.96996 * 120.00871 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47331 * 59.99722 * 5 4 2 33 33 H 1.08997 * 109.47109 * 299.99726 * 5 4 2 34 34 H 0.97004 * 119.99849 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.46689 * 295.80885 * 11 9 8 36 36 H 1.08998 * 109.47346 * 55.80152 * 11 9 8 37 37 H 1.08998 * 109.47724 * 175.80835 * 11 9 8 38 38 H 1.09004 * 112.94491 * 293.58526 * 12 9 8 39 39 H 1.08999 * 113.76889 * 336.35083 * 13 12 9 40 40 H 1.09004 * 113.76780 * 107.74293 * 13 12 9 41 41 H 1.09007 * 109.46633 * 299.99711 * 17 15 14 42 42 H 1.08993 * 109.47149 * 59.99276 * 17 15 14 43 43 H 0.97002 * 119.99806 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.76931 * 221.15338 * 27 14 13 45 45 H 1.09002 * 113.87262 * 89.76514 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5881 -0.0013 7 8 3.3601 -3.5099 -0.0022 8 7 5.4732 -2.8344 -0.0006 9 6 5.9615 -4.2156 -0.0025 10 1 5.2885 -4.8397 0.5854 11 6 6.0142 -4.7361 -1.4402 12 6 7.3636 -4.2617 0.6082 13 6 7.7973 -5.6682 1.0593 14 7 8.3443 -5.0026 2.2604 15 6 9.3145 -5.3027 3.1464 16 8 9.5553 -4.5444 4.0619 17 6 10.1002 -6.5803 2.9997 18 16 11.3190 -6.6955 4.3328 19 6 12.0710 -8.2366 3.9274 20 1 11.7320 -8.7929 3.0659 21 6 13.0990 -8.7357 4.7152 22 7 13.5118 -8.0580 5.7655 23 14 13.8966 -10.3691 4.2850 24 1 13.2554 -10.9278 3.0677 25 1 15.3450 -10.1612 4.0312 26 1 13.7233 -11.3173 5.4147 27 6 7.4035 -3.8771 2.0984 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 4.0089 -0.6540 0.8904 33 1 4.0096 -0.6528 -0.8895 34 1 6.1036 -2.0971 0.0005 35 1 5.0050 -4.7733 -1.8503 36 1 6.6280 -4.0692 -2.0458 37 1 6.4471 -5.7363 -1.4490 38 1 8.1084 -3.7462 0.0019 39 1 6.9640 -6.3386 1.2696 40 1 8.5572 -6.1194 0.4211 41 1 9.4221 -7.4320 3.0532 42 1 10.6122 -6.5834 2.0375 43 1 14.2300 -8.4070 6.3162 44 1 7.8496 -2.9009 2.2883 45 1 6.4537 -4.0184 2.6141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487142072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:02 Heat of formation + Delta-G solvation = -109.982057 kcal Electronic energy + Delta-G solvation = -26364.616700 eV Core-core repulsion = 22315.234554 eV Total energy + Delta-G solvation = -4049.382146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68609 -41.02904 -40.14665 -39.00141 -36.31732 -35.44689 -34.60154 -32.75672 -31.65910 -31.01065 -28.90135 -28.00603 -27.66128 -26.99651 -24.45860 -21.81390 -21.60561 -21.59817 -20.39918 -19.54475 -18.75728 -18.01033 -17.90058 -17.15904 -17.04004 -16.95504 -16.88820 -16.80872 -16.30106 -15.88639 -15.72306 -15.36120 -14.90551 -14.79567 -14.50256 -14.14855 -13.99525 -13.97694 -13.69354 -13.58174 -13.33029 -13.29946 -13.16857 -13.00389 -12.91811 -12.91510 -12.72326 -12.56173 -11.95192 -11.79775 -11.71554 -11.17201 -11.13228 -11.07166 -10.87894 -10.30688 -10.29576 -10.11457 -9.77700 -8.70159 -8.36237 -6.15322 1.20430 1.41086 1.42513 1.47342 1.53810 1.56731 1.60787 1.77027 1.96571 2.25865 2.46225 2.98217 3.16948 3.27216 3.57902 3.65865 3.69611 3.95773 4.02740 4.12538 4.23938 4.31327 4.37621 4.42820 4.43200 4.47411 4.51437 4.54654 4.59014 4.63638 4.67693 4.83948 4.90654 5.02022 5.08039 5.19981 5.29265 5.39213 5.40431 5.45825 6.18508 6.43246 6.48094 6.54994 7.05024 7.08662 7.10920 7.17689 8.73391 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.001599 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.776435 B =17504.368592 C =18076.810055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.716 5.716 5 C 0.096 3.904 6 C 0.517 3.483 7 O -0.568 6.568 8 N -0.708 5.708 9 C 0.160 3.840 10 H 0.083 0.917 11 C -0.159 4.159 12 C -0.105 4.105 13 C 0.109 3.891 14 N -0.651 5.651 15 C 0.552 3.448 16 O -0.572 6.572 17 C -0.119 4.119 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.107 3.893 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.418 0.582 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.418 0.582 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.882 10.322 -20.386 33.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.372 5.372 5 C -0.031 4.031 6 C 0.303 3.697 7 O -0.448 6.448 8 N -0.360 5.360 9 C 0.055 3.945 10 H 0.101 0.899 11 C -0.217 4.217 12 C -0.124 4.124 13 C -0.013 4.013 14 N -0.387 5.387 15 C 0.341 3.659 16 O -0.451 6.451 17 C -0.270 4.270 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.015 4.015 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.257 0.743 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.384 11.464 -18.763 32.834 hybrid contribution 0.608 -1.648 -0.559 1.844 sum -23.777 9.816 -19.323 32.172 Atomic orbital electron populations 1.21906 0.88154 1.06258 1.06247 1.21526 0.92286 0.82338 0.74096 1.90721 1.72005 1.32971 1.52083 1.45882 1.06250 1.10063 1.74978 1.21139 0.82547 0.93690 1.05769 1.20570 0.82980 0.90908 0.75207 1.90708 1.55987 1.46791 1.51276 1.45846 1.06475 1.09597 1.74104 1.20879 0.93042 0.82808 0.97796 0.89866 1.22125 1.02234 1.02631 0.94725 1.23342 0.97587 0.97102 0.94411 1.23581 0.98786 0.95986 0.82977 1.50081 1.33680 1.26193 1.28761 1.19793 0.79790 0.86339 0.80001 1.90691 1.68714 1.52030 1.33628 1.23272 1.01027 0.98173 1.04514 1.85615 1.41121 1.29863 1.36134 1.23225 1.22983 1.06559 1.16543 0.89842 1.26146 0.96400 1.02463 0.94100 1.70196 1.28003 1.40142 1.16472 0.84884 0.77829 0.76354 0.78739 1.17900 1.19858 1.19974 1.23360 0.92076 0.91191 0.94845 0.87302 0.88567 0.87726 0.74343 0.87739 0.87281 0.74485 0.93247 0.90999 0.90028 0.85324 0.87728 0.87750 0.87768 0.87370 0.91963 0.90139 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.30 71.24 0.73 -0.21 16 2 C 0.51 7.09 7.94 87.66 0.70 7.79 16 3 O -0.60 -13.76 17.10 -3.02 -0.05 -13.81 16 4 N -0.72 -8.09 5.53 -466.78 -2.58 -10.67 16 5 C 0.10 0.95 6.15 85.63 0.53 1.47 16 6 C 0.52 5.84 7.86 87.66 0.69 6.53 16 7 O -0.57 -10.16 15.33 -3.04 -0.05 -10.21 16 8 N -0.71 -5.04 4.95 -442.55 -2.19 -7.23 16 9 C 0.16 1.35 2.29 44.99 0.10 1.46 16 10 H 0.08 1.00 7.49 -2.39 -0.02 0.98 16 11 C -0.16 -1.17 9.46 71.98 0.68 -0.49 16 12 C -0.11 -1.01 3.35 -10.13 -0.03 -1.04 16 13 C 0.11 1.51 8.01 86.44 0.69 2.20 16 14 N -0.65 -16.36 3.61 -835.88 -3.02 -19.38 16 15 C 0.55 21.03 8.08 87.66 0.71 21.74 16 16 O -0.57 -27.58 16.59 -3.06 -0.05 -27.63 16 17 C -0.12 -4.79 5.91 71.24 0.42 -4.36 16 18 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 19 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.11 1.87 8.28 86.49 0.72 2.59 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.42 4.04 7.44 -92.71 -0.69 3.35 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.42 1.04 8.60 -92.71 -0.80 0.24 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.08 0.47 7.99 -2.39 -0.02 0.45 16 38 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.10 1.19 8.03 -2.39 -0.02 1.17 16 40 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -90.11 401.85 -0.21 -90.32 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -0.47 Total: 10.45 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 7.04 Total: 8.43 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -7.50 Total: -93.04 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.15 Total: -51.65 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -90.11 -0.21 -90.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487142072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.658 kcal (2) G-P(sol) polarization free energy of solvation -90.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds