Wall clock time and date at job start Wed Apr 1 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47051 * 2 1 4 4 C 1.46503 * 119.99764 * 90.00117 * 3 2 1 5 5 C 1.53000 * 109.46967 * 89.99726 * 4 3 2 6 6 N 1.46504 * 109.47111 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00029 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99831 * 354.99085 * 7 6 5 9 9 C 1.50698 * 119.99861 * 174.70322 * 7 6 5 10 10 C 1.50696 * 115.55209 * 279.32071 * 9 7 6 11 11 N 1.34781 * 119.99999 * 294.04092 * 10 9 7 12 12 O 1.21281 * 120.00149 * 114.04146 * 10 9 7 13 13 C 1.52998 * 117.49621 * 133.61088 * 9 7 6 14 14 C 1.52997 * 60.00149 * 252.51410 * 13 9 7 15 15 C 1.34771 * 120.00051 * 269.99855 * 3 2 1 16 16 O 1.21281 * 119.99585 * 179.97438 * 15 3 2 17 17 C 1.50702 * 119.99956 * 0.02562 * 15 3 2 18 18 S 1.80997 * 109.46880 * 179.97438 * 17 15 3 19 19 C 1.76201 * 100.00090 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99793 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99835 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47412 * 60.00164 * 23 21 19 25 25 H 1.48497 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47231 * 300.00186 * 23 21 19 27 27 H 1.08999 * 109.47289 * 59.99802 * 1 2 3 28 28 H 1.09002 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47116 * 299.99641 * 1 2 3 30 30 H 1.08991 * 109.46993 * 239.99943 * 2 1 3 31 31 H 1.08999 * 109.47289 * 120.00198 * 2 1 3 32 32 H 1.09002 * 109.47244 * 330.00328 * 4 3 2 33 33 H 1.08993 * 109.47188 * 209.99727 * 4 3 2 34 34 H 1.09003 * 109.47361 * 60.00015 * 5 4 3 35 35 H 1.09002 * 109.47714 * 299.99929 * 5 4 3 36 36 H 0.96998 * 120.00083 * 0.02562 * 6 5 4 37 37 H 0.96993 * 119.99881 * 354.98569 * 11 10 9 38 38 H 0.96998 * 119.99613 * 174.98869 * 11 10 9 39 39 H 1.08996 * 117.50104 * 0.02562 * 13 9 7 40 40 H 1.08999 * 117.50164 * 145.02191 * 13 9 7 41 41 H 1.09001 * 117.49661 * 252.51335 * 14 13 9 42 42 H 1.08999 * 117.49881 * 107.49119 * 14 13 9 43 43 H 1.08996 * 109.46623 * 299.99156 * 17 15 3 44 44 H 1.08997 * 109.47349 * 59.99831 * 17 15 3 45 45 H 0.96999 * 120.00221 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8313 1.7104 6 7 3.9519 2.5224 2.9789 7 6 5.1645 2.4506 3.5627 8 8 6.0256 1.7413 3.0869 9 6 5.4525 3.2565 4.8031 10 6 5.7991 4.7047 4.5713 11 7 6.9374 5.0305 3.9272 12 8 5.0538 5.5770 4.9644 13 6 6.1442 2.5414 5.9654 14 6 4.6635 2.9126 6.0680 15 6 2.2430 2.0166 -1.1671 16 8 2.6468 3.1602 -1.1670 17 6 1.9913 1.3063 -2.4723 18 16 2.3828 2.4155 -3.8479 19 6 2.0097 1.3595 -5.2082 20 1 1.6545 0.3551 -5.0305 21 6 2.1711 1.8187 -6.5080 22 7 2.6034 3.0429 -6.7246 23 14 1.7748 0.6993 -7.9500 24 1 0.3468 0.2969 -7.8865 25 1 2.0287 1.4221 -9.2221 26 1 2.6333 -0.5108 -7.8878 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6876 2.0285 33 1 2.0956 3.1410 1.1385 34 1 4.3884 2.2154 0.9508 35 1 3.8745 0.7621 1.8408 36 1 3.2407 3.0310 3.3990 37 1 7.5685 4.3377 3.6773 38 1 7.1253 5.9578 3.7137 39 1 6.3913 1.4881 5.8328 40 1 6.8502 3.1183 6.5627 41 1 4.3954 3.7338 6.7327 42 1 3.9361 2.1035 6.0030 43 1 2.6213 0.4187 -2.5302 44 1 0.9432 1.0125 -2.5299 45 1 2.7159 3.3640 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496935468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:03 Heat of formation + Delta-G solvation = -85.916053 kcal Electronic energy + Delta-G solvation = -27148.266439 eV Core-core repulsion = 23099.927874 eV Total energy + Delta-G solvation = -4048.338566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02739 -39.78029 -39.12289 -36.58022 -36.12584 -35.03726 -33.98070 -32.44221 -31.48042 -29.85100 -28.17723 -25.89127 -25.46293 -23.71411 -23.21056 -22.94478 -21.99755 -20.18068 -19.12582 -18.40796 -17.70361 -17.45057 -16.87296 -16.69285 -16.41691 -15.77159 -15.62302 -15.39367 -14.87230 -14.81515 -14.78598 -14.20409 -13.96810 -13.86502 -13.67129 -13.52494 -13.40595 -12.99198 -12.59074 -12.30452 -12.17745 -12.03184 -11.88948 -11.67159 -11.47104 -11.22645 -11.17781 -11.05576 -11.04196 -10.77720 -10.59248 -10.12063 -10.09750 -9.83443 -9.45829 -9.40394 -9.07121 -8.72389 -8.25088 -6.52013 -6.22662 -3.93711 1.86425 2.25165 2.45088 2.85153 2.94726 3.02719 3.22507 3.23481 3.27788 3.32992 3.57851 4.13236 4.18980 4.20653 4.30684 4.43427 4.61134 4.68837 4.83062 5.01373 5.01872 5.11096 5.11926 5.13648 5.22917 5.27927 5.30164 5.49421 5.53071 5.61427 5.69673 5.73295 5.77810 5.89491 6.01392 6.01663 6.18189 6.34191 6.55176 6.87043 7.07380 7.42149 7.57992 7.76882 7.80154 8.33671 8.46948 9.22435 10.84708 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002130 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.071612 B =13139.684793 C =14042.460138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.108 3.892 5 C 0.102 3.898 6 N -0.716 5.716 7 C 0.558 3.442 8 O -0.524 6.524 9 C -0.200 4.200 10 C 0.565 3.435 11 N -0.843 5.843 12 O -0.531 6.531 13 C -0.128 4.128 14 C -0.132 4.132 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.405 0.595 37 H 0.408 0.592 38 H 0.407 0.593 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -4.896 26.678 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.354 5.354 4 C -0.016 4.016 5 C -0.022 4.022 6 N -0.368 5.368 7 C 0.341 3.659 8 O -0.399 6.399 9 C -0.207 4.207 10 C 0.348 3.652 11 N -0.406 5.406 12 O -0.406 6.406 13 C -0.166 4.166 14 C -0.170 4.170 15 C 0.322 3.678 16 O -0.385 6.385 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.237 0.763 38 H 0.239 0.761 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.312 -3.133 26.453 26.843 hybrid contribution -0.672 -1.802 -1.082 2.207 sum 2.640 -4.935 25.371 25.981 Atomic orbital electron populations 1.22223 0.95785 1.02301 1.02785 1.21585 0.94585 0.82153 1.03439 1.47891 1.67838 1.14650 1.05011 1.21413 0.94235 0.99868 0.86065 1.21853 0.98057 0.97561 0.84749 1.45792 1.13344 1.53393 1.24242 1.18965 0.82309 0.81323 0.83277 1.90753 1.45726 1.39642 1.63824 1.21452 1.12438 0.94764 0.92016 1.18938 0.81106 0.88055 0.77127 1.43765 1.22602 1.13422 1.60857 1.90779 1.50130 1.49594 1.50119 1.23086 0.96103 1.01824 0.95546 1.23131 0.95034 1.03701 0.95114 1.20423 0.76239 0.86493 0.84620 1.90711 1.43591 1.17456 1.86731 1.23578 1.04862 1.04548 0.97060 1.85414 1.86907 1.17830 0.93362 1.22805 1.51915 1.01450 0.92172 0.90976 1.24990 0.94650 0.95545 0.98378 1.70004 1.42847 1.15626 1.21788 0.86228 0.78949 0.80042 0.80306 1.19937 1.20811 1.19919 0.91794 0.91481 0.92515 0.89683 0.90552 0.90152 0.89085 0.90451 0.90990 0.76053 0.76300 0.76135 0.86843 0.87250 0.86634 0.87172 0.89186 0.89109 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.11 1.04 5.93 -4.04 -0.02 1.01 16 3 N -0.62 -8.04 2.47 -173.69 -0.43 -8.47 16 4 C 0.11 1.16 5.52 -4.04 -0.02 1.13 16 5 C 0.10 1.15 6.00 -4.04 -0.02 1.12 16 6 N -0.72 -6.85 5.55 -60.29 -0.33 -7.18 16 7 C 0.56 5.96 6.97 -10.99 -0.08 5.88 16 8 O -0.52 -7.29 17.02 5.56 0.09 -7.19 16 9 C -0.20 -1.68 2.25 -156.82 -0.35 -2.03 16 10 C 0.57 5.61 7.34 -10.99 -0.08 5.53 16 11 N -0.84 -6.30 8.87 31.22 0.28 -6.02 16 12 O -0.53 -6.94 17.55 5.56 0.10 -6.85 16 13 C -0.13 -0.76 9.87 -26.73 -0.26 -1.03 16 14 C -0.13 -0.79 9.76 -26.73 -0.26 -1.05 16 15 C 0.53 9.79 7.69 -10.99 -0.08 9.70 16 16 O -0.51 -11.36 15.44 5.56 0.09 -11.28 16 17 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.06 0.71 7.22 -51.93 -0.37 0.33 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.04 8.48 -40.82 -0.35 2.69 16 37 H 0.41 2.52 8.83 -40.82 -0.36 2.16 16 38 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.12 0.69 8.00 -51.93 -0.42 0.28 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 44 H 0.09 1.67 7.18 -51.92 -0.37 1.29 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -38.14 402.00 -7.77 -45.91 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.68 Total: 4.53 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.44 Total: 3.47 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.25 Total: -47.05 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.28 Total: -25.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.14 -7.77 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496935468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.004 kcal (2) G-P(sol) polarization free energy of solvation -38.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds