Wall clock time and date at job start Wed Apr 1 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47051 * 2 1 4 4 C 1.46503 * 119.99764 * 90.00117 * 3 2 1 5 5 C 1.53000 * 109.46967 * 89.99726 * 4 3 2 6 6 N 1.46504 * 109.47111 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00029 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99831 * 354.99085 * 7 6 5 9 9 C 1.50698 * 119.99861 * 174.70322 * 7 6 5 10 10 C 1.50696 * 115.55209 * 279.32071 * 9 7 6 11 11 N 1.34781 * 119.99999 * 294.04092 * 10 9 7 12 12 O 1.21281 * 120.00149 * 114.04146 * 10 9 7 13 13 C 1.52998 * 117.49621 * 133.61088 * 9 7 6 14 14 C 1.52997 * 60.00149 * 252.51410 * 13 9 7 15 15 C 1.34771 * 120.00051 * 269.99855 * 3 2 1 16 16 O 1.21281 * 119.99585 * 179.97438 * 15 3 2 17 17 C 1.50702 * 119.99956 * 0.02562 * 15 3 2 18 18 S 1.80997 * 109.46880 * 179.97438 * 17 15 3 19 19 C 1.76201 * 100.00090 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99793 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99835 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47412 * 60.00164 * 23 21 19 25 25 H 1.48497 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47231 * 300.00186 * 23 21 19 27 27 H 1.08999 * 109.47289 * 59.99802 * 1 2 3 28 28 H 1.09002 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47116 * 299.99641 * 1 2 3 30 30 H 1.08991 * 109.46993 * 239.99943 * 2 1 3 31 31 H 1.08999 * 109.47289 * 120.00198 * 2 1 3 32 32 H 1.09002 * 109.47244 * 330.00328 * 4 3 2 33 33 H 1.08993 * 109.47188 * 209.99727 * 4 3 2 34 34 H 1.09003 * 109.47361 * 60.00015 * 5 4 3 35 35 H 1.09002 * 109.47714 * 299.99929 * 5 4 3 36 36 H 0.96998 * 120.00083 * 0.02562 * 6 5 4 37 37 H 0.96993 * 119.99881 * 354.98569 * 11 10 9 38 38 H 0.96998 * 119.99613 * 174.98869 * 11 10 9 39 39 H 1.08996 * 117.50104 * 0.02562 * 13 9 7 40 40 H 1.08999 * 117.50164 * 145.02191 * 13 9 7 41 41 H 1.09001 * 117.49661 * 252.51335 * 14 13 9 42 42 H 1.08999 * 117.49881 * 107.49119 * 14 13 9 43 43 H 1.08996 * 109.46623 * 299.99156 * 17 15 3 44 44 H 1.08997 * 109.47349 * 59.99831 * 17 15 3 45 45 H 0.96999 * 120.00221 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8313 1.7104 6 7 3.9519 2.5224 2.9789 7 6 5.1645 2.4506 3.5627 8 8 6.0256 1.7413 3.0869 9 6 5.4525 3.2565 4.8031 10 6 5.7991 4.7047 4.5713 11 7 6.9374 5.0305 3.9272 12 8 5.0538 5.5770 4.9644 13 6 6.1442 2.5414 5.9654 14 6 4.6635 2.9126 6.0680 15 6 2.2430 2.0166 -1.1671 16 8 2.6468 3.1602 -1.1670 17 6 1.9913 1.3063 -2.4723 18 16 2.3828 2.4155 -3.8479 19 6 2.0097 1.3595 -5.2082 20 1 1.6545 0.3551 -5.0305 21 6 2.1711 1.8187 -6.5080 22 7 2.6034 3.0429 -6.7246 23 14 1.7748 0.6993 -7.9500 24 1 0.3468 0.2969 -7.8865 25 1 2.0287 1.4221 -9.2221 26 1 2.6333 -0.5108 -7.8878 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6876 2.0285 33 1 2.0956 3.1410 1.1385 34 1 4.3884 2.2154 0.9508 35 1 3.8745 0.7621 1.8408 36 1 3.2407 3.0310 3.3990 37 1 7.5685 4.3377 3.6773 38 1 7.1253 5.9578 3.7137 39 1 6.3913 1.4881 5.8328 40 1 6.8502 3.1183 6.5627 41 1 4.3954 3.7338 6.7327 42 1 3.9361 2.1035 6.0030 43 1 2.6213 0.4187 -2.5302 44 1 0.9432 1.0125 -2.5299 45 1 2.7159 3.3640 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496935468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:03 Heat of formation + Delta-G solvation = -116.689054 kcal Electronic energy + Delta-G solvation = -27149.600857 eV Core-core repulsion = 23099.927874 eV Total energy + Delta-G solvation = -4049.672983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79709 -41.02604 -40.02422 -37.50984 -37.04081 -35.99531 -34.71105 -34.59328 -32.42622 -31.14682 -29.31116 -27.67819 -26.57715 -24.55150 -24.19491 -23.44062 -22.84623 -21.06366 -20.37308 -19.53472 -19.15160 -18.22371 -18.09451 -17.72125 -17.16213 -16.90158 -16.85650 -16.62547 -16.38661 -15.87666 -15.72721 -15.64393 -14.99671 -14.85706 -14.69819 -14.55866 -14.41904 -14.22100 -14.07687 -13.44647 -13.19263 -13.11144 -12.87499 -12.77551 -12.66763 -12.62023 -12.37408 -12.30511 -11.99719 -11.78901 -11.73985 -11.33193 -11.13394 -11.00910 -10.88592 -10.82464 -10.30286 -10.28166 -9.85176 -8.68631 -8.35162 -6.13844 1.05393 1.22790 1.41995 1.43382 1.46673 1.50768 1.53911 1.78236 2.22621 2.27039 2.30667 2.68703 2.98918 3.23839 3.48115 3.63490 3.64456 3.70994 3.79700 3.82988 3.99250 4.06005 4.20055 4.31956 4.40924 4.47147 4.56041 4.59615 4.65274 4.69513 4.82345 4.85913 4.89608 5.01159 5.09934 5.17139 5.38661 5.40696 5.55658 5.69657 6.18444 6.19617 6.21246 6.30401 6.97115 7.05832 7.09484 7.10382 8.73862 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002130 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.071612 B =13139.684793 C =14042.460138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.111 3.889 5 C 0.113 3.887 6 N -0.707 5.707 7 C 0.559 3.441 8 O -0.560 6.560 9 C -0.217 4.217 10 C 0.562 3.438 11 N -0.834 5.834 12 O -0.568 6.568 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.532 3.468 16 O -0.562 6.562 17 C -0.123 4.123 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -7.728 28.509 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.336 5.336 4 C -0.012 4.012 5 C -0.012 4.012 6 N -0.359 5.359 7 C 0.344 3.656 8 O -0.438 6.438 9 C -0.223 4.223 10 C 0.345 3.655 11 N -0.397 5.397 12 O -0.446 6.446 13 C -0.153 4.153 14 C -0.155 4.155 15 C 0.320 3.680 16 O -0.440 6.440 17 C -0.274 4.274 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.253 0.747 37 H 0.245 0.755 38 H 0.244 0.756 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.186 -6.003 28.331 29.043 hybrid contribution -0.309 -0.957 -1.506 1.811 sum 1.878 -6.960 26.826 27.778 Atomic orbital electron populations 1.22190 0.94726 1.03601 1.02135 1.21943 0.95391 0.80024 1.05120 1.47858 1.65870 1.15765 1.04111 1.21580 0.94915 0.98999 0.85733 1.21612 0.97283 0.97925 0.84402 1.45709 1.13668 1.53054 1.23455 1.19308 0.81888 0.80859 0.83574 1.90733 1.46731 1.41356 1.64981 1.21329 1.15478 0.93605 0.91903 1.19220 0.81068 0.88463 0.76748 1.43759 1.22121 1.14078 1.59703 1.90757 1.51326 1.50693 1.51857 1.23223 0.96609 1.01886 0.93561 1.23273 0.95454 1.03957 0.92803 1.20189 0.76274 0.85904 0.85649 1.90694 1.46264 1.19534 1.87476 1.23391 1.06035 1.03011 0.94948 1.85601 1.87717 1.22082 0.97448 1.23145 1.51779 1.01736 0.92553 0.89851 1.26143 0.94167 0.97170 1.01732 1.70180 1.44228 1.17904 1.22521 0.85006 0.79359 0.77814 0.75843 1.18527 1.20472 1.18606 0.94323 0.89217 0.91290 0.90119 0.86877 0.85380 0.90990 0.94678 0.89933 0.74661 0.75471 0.75553 0.86457 0.85924 0.86508 0.85364 0.87538 0.87379 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 71.98 0.74 -1.73 16 2 C 0.10 1.58 5.93 86.38 0.51 2.09 16 3 N -0.60 -14.72 2.47 -821.82 -2.03 -16.75 16 4 C 0.11 2.16 5.52 86.38 0.48 2.64 16 5 C 0.11 2.42 6.00 86.38 0.52 2.94 16 6 N -0.71 -12.67 5.55 -463.05 -2.57 -15.24 16 7 C 0.56 11.45 6.97 87.66 0.61 12.06 16 8 O -0.56 -15.37 17.02 -3.02 -0.05 -15.42 16 9 C -0.22 -3.36 2.25 -53.68 -0.12 -3.48 16 10 C 0.56 10.92 7.34 87.66 0.64 11.57 16 11 N -0.83 -12.33 8.87 -173.53 -1.54 -13.87 16 12 O -0.57 -14.80 17.55 -3.03 -0.05 -14.85 16 13 C -0.12 -1.14 9.87 30.59 0.30 -0.84 16 14 C -0.12 -1.13 9.76 30.59 0.30 -0.83 16 15 C 0.53 19.66 7.69 87.66 0.67 20.34 16 16 O -0.56 -26.07 15.44 -3.03 -0.05 -26.12 16 17 C -0.12 -4.89 4.71 71.24 0.34 -4.56 16 18 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 19 C -0.54 -31.10 9.50 67.95 0.65 -30.45 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.72 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 23 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 H 0.04 0.77 7.22 -2.39 -0.02 0.75 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 31 H 0.11 1.12 8.07 -2.39 -0.02 1.10 16 32 H 0.13 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.07 1.75 7.42 -2.39 -0.02 1.73 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.42 5.54 8.48 -92.71 -0.79 4.75 16 37 H 0.41 5.03 8.83 -92.71 -0.82 4.22 16 38 H 0.41 5.20 8.93 -92.71 -0.83 4.37 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.12 1.16 8.00 -2.39 -0.02 1.14 16 42 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 3.86 7.40 -2.40 -0.02 3.84 16 44 H 0.11 3.91 7.18 -2.40 -0.02 3.89 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -87.80 402.00 -0.43 -88.23 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -1.38 Total: 23.50 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.10 Total: 10.92 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -5.86 Total: -101.95 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.15 Total: -56.39 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -87.80 -0.43 -88.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496935468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.458 kcal (2) G-P(sol) polarization free energy of solvation -87.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds