Wall clock time and date at job start Wed Apr 1 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00249 * 2 1 4 4 N 1.34776 * 120.00127 * 180.02562 * 2 1 3 5 5 C 1.46492 * 120.00503 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47095 * 59.99528 * 5 4 2 7 7 C 1.53007 * 109.46895 * 300.00001 * 5 4 2 8 8 C 1.50701 * 109.47536 * 179.97438 * 5 4 2 9 9 O 1.21287 * 119.99731 * 144.99603 * 8 5 4 10 10 N 1.34767 * 119.99869 * 325.00511 * 8 5 4 11 11 C 1.46500 * 119.99895 * 179.97438 * 10 8 5 12 12 C 1.53501 * 114.20747 * 204.99407 * 11 10 8 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47135 * 299.99846 * 1 2 3 29 29 H 1.09008 * 109.47088 * 59.99291 * 1 2 3 30 30 H 0.97003 * 119.99755 * 359.97438 * 4 2 1 31 31 H 1.09004 * 109.47404 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47523 * 300.00341 * 6 5 4 33 33 H 1.09000 * 109.46757 * 60.00618 * 6 5 4 34 34 H 1.08992 * 109.47047 * 299.99479 * 7 5 4 35 35 H 1.08999 * 109.47143 * 60.00014 * 7 5 4 36 36 H 1.09003 * 109.46693 * 180.02562 * 7 5 4 37 37 H 0.97001 * 120.00444 * 359.97438 * 10 8 5 38 38 H 1.09001 * 113.28417 * 338.06104 * 11 10 8 39 39 H 1.09001 * 113.46643 * 105.36573 * 12 11 10 40 40 H 1.09004 * 113.51834 * 334.94016 * 12 11 10 41 41 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 42 42 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 43 43 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 45 45 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1563 -0.4462 1.2481 7 6 4.1553 -0.4457 -1.2504 8 6 4.1481 -2.5881 -0.0010 9 8 5.1612 -2.8731 -0.6038 10 7 3.4716 -3.5419 0.6689 11 6 3.9596 -4.9232 0.6685 12 6 2.8694 -5.9760 0.9124 13 7 3.8310 -6.7008 1.7568 14 6 4.0273 -7.9829 2.1230 15 8 3.2845 -8.8505 1.7151 16 6 5.1691 -8.3382 3.0401 17 16 5.1663 -10.1226 3.3436 18 6 6.5617 -10.2535 4.4115 19 1 7.1211 -9.3695 4.6798 20 6 6.9381 -11.4917 4.9129 21 7 7.9809 -11.5896 5.7103 22 14 5.9658 -13.0196 4.4550 23 1 6.5393 -13.6210 3.2243 24 1 6.0367 -14.0028 5.5657 25 1 4.5485 -12.6497 4.2110 26 6 4.4801 -5.4099 2.0311 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 1.6958 -2.0072 -0.0005 31 1 5.2463 -0.4459 1.2475 32 1 3.7930 0.5815 1.2485 33 1 3.7933 -0.9603 2.1381 34 1 3.7917 -0.9594 -2.1403 35 1 3.7920 0.5819 -1.2501 36 1 5.2453 -0.4462 -1.2511 37 1 2.6614 -3.3139 1.1512 38 1 4.6176 -5.1475 -0.1710 39 1 2.5840 -6.5217 0.0130 40 1 2.0103 -5.5930 1.4633 41 1 5.0536 -7.8089 3.9859 42 1 6.1118 -8.0498 2.5751 43 1 8.2442 -12.4550 6.0604 44 1 4.0461 -4.8768 2.8770 45 1 5.5669 -5.4733 2.0847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498294689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:36 Heat of formation + Delta-G solvation = -62.490849 kcal Electronic energy + Delta-G solvation = -27139.857640 eV Core-core repulsion = 23092.534867 eV Total energy + Delta-G solvation = -4047.322773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46588 -40.50691 -39.40968 -37.79121 -36.04907 -34.34386 -32.70861 -32.47392 -30.57217 -29.53631 -28.09691 -27.69696 -26.28866 -25.63970 -24.65544 -21.95742 -21.46328 -20.20152 -19.38014 -18.70364 -17.82879 -17.39966 -16.95815 -16.73383 -16.03903 -15.77690 -15.56719 -15.17634 -15.10505 -14.94345 -14.51658 -14.31687 -14.09216 -13.76279 -13.55897 -13.28310 -13.14514 -13.05000 -12.91159 -12.83201 -12.75713 -12.70890 -12.46035 -12.23001 -12.02239 -11.77470 -11.51985 -11.30119 -11.03890 -10.69567 -10.65943 -10.05701 -9.89698 -9.82442 -9.74990 -9.58833 -9.03997 -8.87844 -8.56122 -6.97417 -6.32080 -4.04892 1.84441 2.06099 2.18173 2.57524 2.60527 2.83869 3.09507 3.30607 3.47131 3.52274 3.84912 3.94900 4.21785 4.27570 4.31965 4.43460 4.45314 4.57248 4.60189 4.69372 4.85360 4.93262 5.03000 5.06798 5.09170 5.20654 5.23138 5.26252 5.32107 5.32820 5.40988 5.42616 5.66963 5.70907 5.71845 5.79289 5.85714 5.91976 5.95266 6.74950 6.84130 7.51907 7.57776 7.63080 7.90821 8.27004 8.38453 9.13645 10.77046 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.001847 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.534947 B =15159.770794 C =15580.826419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.518 3.482 3 O -0.535 6.535 4 N -0.729 5.729 5 C 0.161 3.839 6 C -0.161 4.161 7 C -0.151 4.151 8 C 0.521 3.479 9 O -0.514 6.514 10 N -0.716 5.716 11 C 0.108 3.892 12 C 0.098 3.902 13 N -0.648 5.648 14 C 0.566 3.434 15 O -0.512 6.512 16 C -0.116 4.116 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C 0.086 3.914 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.088 0.912 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 25.666 -11.408 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.305 3.695 3 O -0.411 6.411 4 N -0.385 5.385 5 C 0.072 3.928 6 C -0.219 4.219 7 C -0.210 4.210 8 C 0.305 3.695 9 O -0.387 6.387 10 N -0.369 5.369 11 C 0.002 3.998 12 C -0.026 4.026 13 N -0.387 5.387 14 C 0.356 3.644 15 O -0.385 6.385 16 C -0.266 4.266 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.515 5.515 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.039 4.039 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.236 0.764 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.237 0.763 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.207 24.534 -12.276 31.367 hybrid contribution 0.028 -0.164 0.882 0.897 sum -15.179 24.370 -11.394 30.889 Atomic orbital electron populations 1.21884 0.91209 1.04469 1.05655 1.20820 0.90604 0.83174 0.74876 1.90695 1.70348 1.31344 1.48725 1.46340 1.06061 1.09350 1.76789 1.20617 0.80349 0.92323 0.99480 1.22202 1.02337 1.02847 0.94533 1.22069 1.02605 1.01754 0.94525 1.20564 0.84330 0.86416 0.78160 1.90785 1.24084 1.81478 1.42359 1.45900 1.29306 1.08206 1.53493 1.23002 0.97685 0.79612 0.99504 1.23207 0.93324 0.90492 0.95581 1.49269 1.33238 1.05045 1.51182 1.19895 0.85503 0.79019 0.79998 1.90725 1.47161 1.46085 1.54540 1.23219 0.98681 1.03898 1.00837 1.84789 1.42156 1.00433 1.64060 1.22289 1.13494 0.98553 1.32605 0.89331 1.24714 0.94438 0.98620 0.93528 1.69935 1.24725 1.25712 1.31147 0.86734 0.83037 0.83012 0.79060 1.19152 1.19877 1.15951 1.23540 1.00631 0.82403 0.97288 0.90451 0.88426 0.88481 0.76437 0.90696 0.88926 0.91949 0.92215 0.89527 0.90379 0.76277 0.84642 0.89467 0.89711 0.88450 0.88371 0.91887 0.89403 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.33 10.39 36.00 0.37 0.04 16 2 C 0.52 2.77 7.36 -10.99 -0.08 2.69 16 3 O -0.53 -4.98 13.31 5.56 0.07 -4.90 16 4 N -0.73 -2.91 4.86 -48.68 -0.24 -3.15 16 5 C 0.16 1.04 0.98 -132.97 -0.13 0.91 16 6 C -0.16 -1.04 8.38 37.16 0.31 -0.73 16 7 C -0.15 -1.18 7.94 37.16 0.29 -0.88 16 8 C 0.52 3.97 6.65 -10.99 -0.07 3.90 16 9 O -0.51 -6.03 15.69 5.55 0.09 -5.94 16 10 N -0.72 -3.65 5.09 -53.48 -0.27 -3.93 16 11 C 0.11 0.80 4.62 -67.67 -0.31 0.48 16 12 C 0.10 0.81 8.38 -8.51 -0.07 0.74 16 13 N -0.65 -8.07 3.69 -185.07 -0.68 -8.76 16 14 C 0.57 10.07 8.10 -10.99 -0.09 9.98 16 15 O -0.51 -11.01 16.64 5.56 0.09 -10.92 16 16 C -0.12 -2.25 5.98 36.00 0.22 -2.03 16 17 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 22 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C 0.09 0.76 8.25 -8.37 -0.07 0.69 16 27 H 0.08 -0.02 7.91 -51.93 -0.41 -0.43 16 28 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.18 8.14 -51.92 -0.42 -0.25 16 30 H 0.40 0.55 7.08 -40.82 -0.29 0.26 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.72 6.17 -51.93 -0.32 0.40 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.75 6.17 -51.93 -0.32 0.43 16 36 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 37 H 0.40 0.88 7.50 -40.82 -0.31 0.58 16 38 H 0.14 1.24 7.45 -51.93 -0.39 0.86 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 42 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -38.07 389.07 -7.09 -45.16 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.67 Total: -3.02 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.58 Total: 3.82 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.42 Total: -41.44 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.25 Total: -21.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.07 -7.09 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498294689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.330 kcal (2) G-P(sol) polarization free energy of solvation -38.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds