Wall clock time and date at job start Wed Apr 1 2020 01:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47641 * 2 1 4 4 C 1.52999 * 109.46881 * 239.99629 * 2 1 3 5 5 C 1.50696 * 109.47244 * 65.00337 * 4 2 1 6 6 N 1.34778 * 119.99679 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99698 * 359.97438 * 5 4 2 8 8 C 1.50704 * 109.47101 * 119.99898 * 2 1 3 9 9 O 1.21284 * 120.00045 * 85.24772 * 8 2 1 10 10 N 1.34777 * 119.99775 * 265.25178 * 8 2 1 11 11 C 1.47063 * 136.05414 * 174.75356 * 10 8 2 12 12 C 1.53502 * 87.98394 * 153.14055 * 11 10 8 13 13 C 1.53005 * 114.20590 * 139.65460 * 12 11 10 14 14 N 1.46493 * 109.47074 * 91.40318 * 13 12 11 15 15 C 1.34777 * 120.00190 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99711 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00174 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47130 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00288 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99552 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47074 * 60.00280 * 23 21 19 25 25 H 1.48498 * 109.47370 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47149 * 300.00459 * 23 21 19 27 27 C 1.47070 * 136.05895 * 355.13433 * 10 8 2 28 28 H 1.09001 * 109.46621 * 293.76550 * 1 2 3 29 29 H 1.09004 * 109.47007 * 53.76028 * 1 2 3 30 30 H 1.08990 * 109.47430 * 173.76336 * 1 2 3 31 31 H 1.09007 * 109.47108 * 185.00542 * 4 2 1 32 32 H 1.09002 * 109.47396 * 304.99963 * 4 2 1 33 33 H 0.96990 * 120.00692 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99437 * 180.02562 * 6 5 4 35 35 H 1.09001 * 113.47464 * 267.91692 * 11 10 8 36 36 H 1.09000 * 113.46977 * 38.36612 * 11 10 8 37 37 H 1.09000 * 114.38598 * 272.46911 * 12 11 10 38 38 H 1.08996 * 109.46852 * 211.40174 * 13 12 11 39 39 H 1.08996 * 109.46949 * 331.40308 * 13 12 11 40 40 H 0.97008 * 120.00067 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47227 * 300.00146 * 17 15 14 42 42 H 1.09005 * 109.46825 * 59.99792 * 17 15 14 43 43 H 0.97003 * 119.99967 * 179.97438 * 22 21 19 44 44 H 1.08996 * 113.46306 * 321.63516 * 27 10 8 45 45 H 1.08996 * 113.46638 * 92.07980 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 7 1.9854 -0.3917 -3.7001 7 8 1.0110 1.0868 -2.3633 8 6 2.0324 -0.7104 1.2305 9 8 2.1524 -1.9173 1.2274 10 7 2.3481 -0.0046 2.3344 11 6 2.7621 -0.3193 3.7100 12 6 3.4734 1.0404 3.7492 13 6 3.3271 1.7869 5.0769 14 7 4.4437 1.4382 5.9587 15 6 4.5248 1.9803 7.1900 16 8 3.6730 2.7565 7.5680 17 6 5.6731 1.6211 8.0973 18 16 5.5002 2.5042 9.6678 19 6 6.9325 1.9161 10.5088 20 1 7.5964 1.2178 10.0212 21 6 7.2080 2.3511 11.7978 22 7 6.3990 3.2026 12.3920 23 14 8.7260 1.7271 12.6897 24 1 9.9402 2.0974 11.9190 25 1 8.7920 2.3380 14.0416 26 1 8.6525 0.2496 12.8178 27 6 2.4236 1.4192 2.6954 28 1 -0.3632 0.4142 0.9406 29 1 -0.3633 0.6075 -0.8289 30 1 -0.3634 -1.0215 -0.1116 31 1 3.1263 -0.7997 -1.2055 32 1 1.6053 -1.7199 -1.2951 33 1 2.4891 -1.2155 -3.7907 34 1 1.7291 0.1095 -4.4901 35 1 1.9284 -0.3933 4.4082 36 1 3.4436 -1.1675 3.7749 37 1 4.4969 1.0239 3.3747 38 1 3.3318 2.8610 4.8921 39 1 2.3875 1.5038 5.5511 40 1 5.1248 0.8170 5.6564 41 1 5.6678 0.5470 8.2824 42 1 6.6131 1.9034 7.6229 43 1 6.5913 3.5064 13.2929 44 1 2.8171 2.0489 1.8975 45 1 1.4996 1.8080 3.1233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498473898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:47 Heat of formation + Delta-G solvation = -84.528328 kcal Electronic energy + Delta-G solvation = -26167.676984 eV Core-core repulsion = 22119.398595 eV Total energy + Delta-G solvation = -4048.278390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12541 -40.13475 -39.16187 -38.33863 -34.63051 -34.49346 -34.22370 -32.43548 -31.11003 -29.26127 -28.36943 -26.69202 -26.05114 -25.41390 -23.81091 -21.38886 -20.79415 -20.31148 -19.18751 -18.16967 -17.86606 -17.62801 -16.93874 -16.66362 -16.28408 -15.95330 -15.91092 -15.41481 -15.27393 -14.81025 -14.71713 -14.32696 -14.04407 -13.91878 -13.62557 -13.34412 -13.10605 -13.03509 -12.91553 -12.66546 -12.51534 -12.34647 -11.88069 -11.73782 -11.70386 -11.61800 -11.05429 -11.04528 -10.97884 -10.77643 -10.50367 -10.25639 -10.02935 -9.83324 -9.45553 -9.14735 -9.07274 -8.94713 -8.25397 -6.51107 -6.22298 -3.93118 2.09282 2.18870 2.31459 2.97276 3.03291 3.06088 3.23132 3.26703 3.29518 3.59575 3.86229 3.99201 4.15394 4.19915 4.36099 4.45791 4.51370 4.60820 4.77866 4.85268 4.96050 5.02888 5.09727 5.12889 5.13911 5.15052 5.23924 5.27744 5.40343 5.46220 5.54258 5.60643 5.66810 5.82602 5.85286 5.87935 6.12445 6.22661 6.53970 6.74349 7.27527 7.58524 7.64489 7.70342 7.73388 8.34257 8.56720 9.22969 10.85061 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.033353 B = 0.001457 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.297174 B =19213.398990 C =19465.687771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.098 0.902 4 C -0.129 4.129 5 C 0.520 3.480 6 N -0.857 5.857 7 O -0.540 6.540 8 C 0.548 3.452 9 O -0.540 6.540 10 N -0.647 5.647 11 C 0.107 3.893 12 C -0.137 4.137 13 C 0.134 3.866 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.403 0.597 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -8.429 -31.646 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.116 0.884 4 C -0.169 4.169 5 C 0.305 3.695 6 N -0.420 5.420 7 O -0.416 6.416 8 C 0.338 3.662 9 O -0.417 6.417 10 N -0.382 5.382 11 C -0.015 4.015 12 C -0.156 4.156 13 C 0.009 3.991 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.015 4.015 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.231 0.769 34 H 0.233 0.767 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.770 -7.163 -30.781 33.079 hybrid contribution 2.477 -1.834 -0.402 3.108 sum -7.293 -8.997 -31.184 33.265 Atomic orbital electron populations 1.21836 0.91649 1.02999 1.03734 1.20918 0.98658 1.00574 0.90665 0.88424 1.21535 1.03440 1.00713 0.91224 1.20586 0.78424 0.85271 0.85220 1.43884 1.60180 1.29636 1.08306 1.90734 1.39633 1.24565 1.86703 1.20202 0.76024 0.86811 0.83168 1.90715 1.53540 1.14078 1.83378 1.49619 1.68151 1.09577 1.10869 1.23153 0.98245 0.98040 0.82109 1.23245 1.00245 0.96298 0.95798 1.21138 0.90757 0.99641 0.87585 1.45973 1.28061 1.49590 1.15785 1.20312 0.86836 0.79926 0.81091 1.90709 1.40656 1.33857 1.73861 1.23534 0.98697 1.05584 1.02645 1.85394 1.35062 1.58437 1.04458 1.22829 1.10775 1.32216 1.02699 0.90966 1.24986 0.97427 0.94738 0.96363 1.70007 1.36324 1.29917 1.14030 0.86226 0.81763 0.79033 0.78489 1.19945 1.20804 1.19945 1.23050 0.98799 0.83248 0.96431 0.92236 0.89367 0.92262 0.88379 0.87437 0.76874 0.76715 0.89117 0.90012 0.86899 0.90693 0.90957 0.76702 0.89182 0.89198 0.92117 0.89675 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.64 2.30 -91.77 -0.21 -0.85 16 3 H 0.10 0.69 7.44 -51.93 -0.39 0.30 16 4 C -0.13 -0.74 4.75 -27.89 -0.13 -0.88 16 5 C 0.52 3.29 7.85 -10.99 -0.09 3.20 16 6 N -0.86 -2.45 8.87 31.22 0.28 -2.17 16 7 O -0.54 -5.41 14.81 5.56 0.08 -5.33 16 8 C 0.55 5.28 7.07 -10.98 -0.08 5.20 16 9 O -0.54 -7.05 17.15 5.55 0.10 -6.95 16 10 N -0.65 -5.26 3.69 -185.21 -0.68 -5.94 16 11 C 0.11 0.81 8.19 -8.50 -0.07 0.74 16 12 C -0.14 -0.85 4.10 -90.10 -0.37 -1.22 16 13 C 0.13 1.22 5.59 -4.04 -0.02 1.20 16 14 N -0.74 -8.52 5.56 -60.30 -0.33 -8.86 16 15 C 0.53 9.29 7.85 -10.98 -0.09 9.20 16 16 O -0.52 -11.18 15.86 5.56 0.09 -11.09 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.11 0.61 7.75 -8.50 -0.07 0.55 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.73 6.09 -51.93 -0.32 0.41 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.11 0.59 8.02 -51.93 -0.42 0.17 16 33 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 34 H 0.40 0.87 8.93 -40.82 -0.36 0.51 16 35 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.71 7.81 -51.93 -0.41 0.31 16 40 H 0.40 3.47 8.47 -40.82 -0.35 3.13 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 0.38 7.98 -51.93 -0.41 -0.03 16 45 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -39.19 396.82 -8.13 -47.32 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.76 Total: -0.92 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.37 Total: 0.81 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.01 Total: -42.19 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.27 Total: -23.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.19 -8.13 -47.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498473898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.204 kcal (2) G-P(sol) polarization free energy of solvation -39.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds