Wall clock time and date at job start Wed Apr 1 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47641 * 2 1 4 4 C 1.52999 * 109.46881 * 239.99629 * 2 1 3 5 5 C 1.50696 * 109.47244 * 65.00337 * 4 2 1 6 6 N 1.34778 * 119.99679 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99698 * 359.97438 * 5 4 2 8 8 C 1.50704 * 109.47101 * 119.99898 * 2 1 3 9 9 O 1.21284 * 120.00045 * 85.24772 * 8 2 1 10 10 N 1.34777 * 119.99775 * 265.25178 * 8 2 1 11 11 C 1.47063 * 136.05414 * 174.75356 * 10 8 2 12 12 C 1.53502 * 87.98394 * 153.14055 * 11 10 8 13 13 C 1.53005 * 114.20590 * 139.65460 * 12 11 10 14 14 N 1.46493 * 109.47074 * 91.40318 * 13 12 11 15 15 C 1.34777 * 120.00190 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99711 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00174 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47130 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00288 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99552 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47074 * 60.00280 * 23 21 19 25 25 H 1.48498 * 109.47370 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47149 * 300.00459 * 23 21 19 27 27 C 1.47070 * 136.05895 * 355.13433 * 10 8 2 28 28 H 1.09001 * 109.46621 * 293.76550 * 1 2 3 29 29 H 1.09004 * 109.47007 * 53.76028 * 1 2 3 30 30 H 1.08990 * 109.47430 * 173.76336 * 1 2 3 31 31 H 1.09007 * 109.47108 * 185.00542 * 4 2 1 32 32 H 1.09002 * 109.47396 * 304.99963 * 4 2 1 33 33 H 0.96990 * 120.00692 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99437 * 180.02562 * 6 5 4 35 35 H 1.09001 * 113.47464 * 267.91692 * 11 10 8 36 36 H 1.09000 * 113.46977 * 38.36612 * 11 10 8 37 37 H 1.09000 * 114.38598 * 272.46911 * 12 11 10 38 38 H 1.08996 * 109.46852 * 211.40174 * 13 12 11 39 39 H 1.08996 * 109.46949 * 331.40308 * 13 12 11 40 40 H 0.97008 * 120.00067 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47227 * 300.00146 * 17 15 14 42 42 H 1.09005 * 109.46825 * 59.99792 * 17 15 14 43 43 H 0.97003 * 119.99967 * 179.97438 * 22 21 19 44 44 H 1.08996 * 113.46306 * 321.63516 * 27 10 8 45 45 H 1.08996 * 113.46638 * 92.07980 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 7 1.9854 -0.3917 -3.7001 7 8 1.0110 1.0868 -2.3633 8 6 2.0324 -0.7104 1.2305 9 8 2.1524 -1.9173 1.2274 10 7 2.3481 -0.0046 2.3344 11 6 2.7621 -0.3193 3.7100 12 6 3.4734 1.0404 3.7492 13 6 3.3271 1.7869 5.0769 14 7 4.4437 1.4382 5.9587 15 6 4.5248 1.9803 7.1900 16 8 3.6730 2.7565 7.5680 17 6 5.6731 1.6211 8.0973 18 16 5.5002 2.5042 9.6678 19 6 6.9325 1.9161 10.5088 20 1 7.5964 1.2178 10.0212 21 6 7.2080 2.3511 11.7978 22 7 6.3990 3.2026 12.3920 23 14 8.7260 1.7271 12.6897 24 1 9.9402 2.0974 11.9190 25 1 8.7920 2.3380 14.0416 26 1 8.6525 0.2496 12.8178 27 6 2.4236 1.4192 2.6954 28 1 -0.3632 0.4142 0.9406 29 1 -0.3633 0.6075 -0.8289 30 1 -0.3634 -1.0215 -0.1116 31 1 3.1263 -0.7997 -1.2055 32 1 1.6053 -1.7199 -1.2951 33 1 2.4891 -1.2155 -3.7907 34 1 1.7291 0.1095 -4.4901 35 1 1.9284 -0.3933 4.4082 36 1 3.4436 -1.1675 3.7749 37 1 4.4969 1.0239 3.3747 38 1 3.3318 2.8610 4.8921 39 1 2.3875 1.5038 5.5511 40 1 5.1248 0.8170 5.6564 41 1 5.6678 0.5470 8.2824 42 1 6.6131 1.9034 7.6229 43 1 6.5913 3.5064 13.2929 44 1 2.8171 2.0489 1.8975 45 1 1.4996 1.8080 3.1233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498473898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:46 Heat of formation + Delta-G solvation = -116.741442 kcal Electronic energy + Delta-G solvation = -26169.073850 eV Core-core repulsion = 22119.398595 eV Total energy + Delta-G solvation = -4049.675255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77476 -40.75691 -40.32003 -39.13448 -35.68202 -35.17956 -34.64052 -34.56208 -32.11218 -30.45718 -28.91887 -27.71763 -27.28462 -26.72204 -24.44116 -22.02994 -21.72881 -21.16235 -19.83781 -19.74995 -18.68118 -18.03695 -17.79040 -17.60259 -17.38657 -16.85870 -16.75161 -16.52303 -16.34703 -16.23384 -15.77223 -15.49748 -14.91483 -14.75064 -14.58173 -14.35798 -14.33335 -13.90946 -13.69583 -13.54079 -13.45796 -13.14616 -13.08094 -12.97231 -12.84620 -12.61462 -12.39248 -12.25111 -12.17164 -11.72562 -11.60031 -11.11187 -11.10958 -10.94041 -10.74464 -10.57385 -10.24775 -10.04989 -9.80783 -8.63658 -8.32605 -6.10195 1.29521 1.45177 1.47143 1.49045 1.58467 1.63407 1.67109 1.71972 2.27992 2.33365 2.63887 3.01581 3.20900 3.35350 3.42778 3.63215 3.78691 3.91542 3.98064 4.09500 4.13723 4.20093 4.34426 4.35214 4.44985 4.56446 4.57332 4.60860 4.62540 4.63676 4.69512 4.80355 4.84888 4.86313 5.03966 5.22008 5.23192 5.43736 5.49630 5.92668 6.21578 6.45548 6.55122 6.63785 7.02052 7.08870 7.30217 7.35348 8.76246 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.033353 B = 0.001457 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.297174 B =19213.398990 C =19465.687771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.125 4.125 5 C 0.520 3.480 6 N -0.839 5.839 7 O -0.581 6.581 8 C 0.546 3.454 9 O -0.581 6.581 10 N -0.650 5.650 11 C 0.099 3.901 12 C -0.115 4.115 13 C 0.134 3.866 14 N -0.712 5.712 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.263 1.263 27 C 0.110 3.890 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.418 0.582 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.104 0.896 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 -9.550 -33.459 35.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.122 0.878 4 C -0.165 4.165 5 C 0.305 3.695 6 N -0.403 5.403 7 O -0.461 6.461 8 C 0.337 3.663 9 O -0.461 6.461 10 N -0.384 5.384 11 C -0.023 4.023 12 C -0.134 4.134 13 C 0.010 3.990 14 N -0.366 5.366 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.188 1.188 27 C -0.012 4.012 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.249 0.751 34 H 0.239 0.761 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.141 -8.325 -32.670 34.683 hybrid contribution 1.936 -1.536 0.024 2.471 sum -6.206 -9.862 -32.647 34.664 Atomic orbital electron populations 1.21766 0.91898 1.02573 1.03435 1.20905 0.98354 1.00753 0.90389 0.87839 1.21509 1.04213 1.00425 0.90367 1.20655 0.77960 0.84714 0.86130 1.43751 1.59109 1.29926 1.07495 1.90720 1.41717 1.26369 1.87324 1.20545 0.75478 0.86398 0.83904 1.90691 1.55429 1.15783 1.84163 1.49705 1.67202 1.10795 1.10690 1.23259 0.98476 0.98573 0.82036 1.23072 1.01242 0.94873 0.94256 1.21269 0.89446 1.00129 0.88197 1.45709 1.28798 1.48210 1.13871 1.19990 0.85726 0.79838 0.82443 1.90700 1.42163 1.36335 1.75194 1.23388 1.00660 1.05353 0.98841 1.85559 1.36007 1.60982 1.09979 1.23187 1.10852 1.32278 1.03252 0.89909 1.26101 1.00912 0.94728 0.97294 1.70177 1.38599 1.31501 1.14470 0.85027 0.77382 0.78746 0.76990 1.18651 1.20474 1.18751 1.23206 0.99131 0.82213 0.96678 0.92145 0.90067 0.92632 0.87058 0.87198 0.75141 0.76053 0.89071 0.90451 0.85304 0.90660 0.91466 0.74590 0.87295 0.87159 0.92031 0.87734 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 2 C -0.08 -1.12 2.30 -11.54 -0.03 -1.15 16 3 H 0.10 1.28 7.44 -2.39 -0.02 1.27 16 4 C -0.12 -1.28 4.75 29.85 0.14 -1.14 16 5 C 0.52 5.95 7.85 87.66 0.69 6.64 16 6 N -0.84 -3.38 8.87 -173.54 -1.54 -4.92 16 7 O -0.58 -11.29 14.81 -3.03 -0.04 -11.33 16 8 C 0.55 9.88 7.07 87.66 0.62 10.50 16 9 O -0.58 -14.82 17.15 -3.04 -0.05 -14.88 16 10 N -0.65 -9.38 3.69 -858.25 -3.17 -12.55 16 11 C 0.10 1.31 8.19 83.18 0.68 1.99 16 12 C -0.12 -1.11 4.10 -10.46 -0.04 -1.15 16 13 C 0.13 2.14 5.59 86.38 0.48 2.62 16 14 N -0.71 -14.71 5.56 -463.08 -2.57 -17.28 16 15 C 0.53 18.06 7.85 87.66 0.69 18.75 16 16 O -0.57 -24.65 15.86 -3.02 -0.05 -24.70 16 17 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 18 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 19 C -0.55 -30.86 9.50 67.96 0.65 -30.22 16 20 H 0.08 4.30 7.80 -2.92 -0.02 4.28 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 23 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 C 0.11 0.96 7.75 83.18 0.64 1.60 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.33 6.09 -2.38 -0.01 1.31 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.11 1.09 8.02 -2.39 -0.02 1.07 16 33 H 0.42 -0.71 8.83 -92.72 -0.82 -1.53 16 34 H 0.41 1.13 8.93 -92.70 -0.83 0.30 16 35 H 0.09 1.21 7.87 -2.39 -0.02 1.20 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.22 7.81 -2.39 -0.02 1.20 16 40 H 0.42 5.83 8.47 -92.70 -0.79 5.05 16 41 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.10 0.58 7.98 -2.39 -0.02 0.56 16 45 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -87.90 396.82 -1.60 -89.50 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -1.39 Total: 11.86 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.06 Total: 3.89 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -6.99 Total: -90.02 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.14 Total: -50.90 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -87.90 -1.60 -89.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498473898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.243 kcal (2) G-P(sol) polarization free energy of solvation -87.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds