Wall clock time and date at job start Wed Apr 1 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46807 * 2 1 4 4 C 1.53001 * 109.47158 * 240.00530 * 2 1 3 5 5 N 1.46504 * 109.47117 * 64.99489 * 4 2 1 6 6 C 1.34772 * 119.99544 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00293 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99943 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47368 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99878 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00237 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99835 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00234 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99989 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47588 * 90.00057 * 14 12 10 16 16 H 1.48500 * 109.47156 * 209.99999 * 14 12 10 17 17 H 1.48505 * 109.47246 * 330.00081 * 14 12 10 18 18 C 1.52996 * 109.47177 * 119.99967 * 2 1 3 19 19 N 1.46500 * 109.47548 * 294.99856 * 18 2 1 20 20 C 1.34773 * 119.99993 * 179.97438 * 19 18 2 21 21 O 1.21275 * 120.00344 * 0.02562 * 20 19 18 22 22 C 1.50698 * 119.99748 * 180.02562 * 20 19 18 23 23 H 1.09002 * 110.21853 * 39.52601 * 22 20 19 24 24 C 1.54474 * 110.32204 * 277.54832 * 22 20 19 25 25 C 1.54625 * 101.76763 * 215.54486 * 24 22 20 26 26 C 1.51286 * 104.19405 * 24.79834 * 25 24 22 27 27 O 1.21283 * 124.93955 * 163.70869 * 26 25 24 28 28 N 1.34417 * 110.11297 * 343.74897 * 26 25 24 29 29 H 1.09003 * 109.47384 * 59.99748 * 1 2 3 30 30 H 1.08997 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46883 * 299.99803 * 1 2 3 32 32 H 1.08997 * 109.46966 * 184.99921 * 4 2 1 33 33 H 1.08997 * 109.46543 * 304.99788 * 4 2 1 34 34 H 0.96999 * 119.99973 * 0.02562 * 5 4 2 35 35 H 1.09005 * 109.46865 * 300.00393 * 8 6 5 36 36 H 1.08999 * 109.46951 * 59.99484 * 8 6 5 37 37 H 0.96995 * 120.00212 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.46934 * 175.00098 * 18 2 1 39 39 H 1.09000 * 109.47171 * 55.00747 * 18 2 1 40 40 H 0.96997 * 119.99848 * 0.02562 * 19 18 2 41 41 H 1.09001 * 110.97106 * 97.42576 * 24 22 20 42 42 H 1.09007 * 110.96855 * 333.66435 * 24 22 20 43 43 H 1.09001 * 110.48978 * 266.11806 * 25 24 22 44 44 H 1.09000 * 110.49031 * 143.47236 * 25 24 22 45 45 H 0.97006 * 124.34688 * 179.62103 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 1.9955 -0.4134 -3.6660 7 8 2.6256 -1.4435 -3.7793 8 6 1.5973 0.3652 -4.8933 9 16 2.2005 -0.4880 -6.3712 10 6 1.6109 0.6075 -7.6190 11 1 1.0589 1.4937 -7.3427 12 6 1.8569 0.3321 -8.9569 13 7 2.5302 -0.7477 -9.2937 14 14 1.2325 1.4938 -10.2797 15 1 2.2634 2.5256 -10.5594 16 1 0.9510 0.7267 -11.5197 17 1 -0.0133 2.1530 -9.8119 18 6 2.0400 -0.7212 1.2492 19 7 1.6526 0.0353 2.4424 20 6 1.9957 -0.4137 3.6659 21 8 2.6257 -1.4438 3.7792 22 6 1.5966 0.3643 4.8933 23 1 0.5880 0.7608 4.7765 24 6 2.5966 1.5137 5.1486 25 6 2.6462 1.5512 6.6936 26 6 2.2513 0.1518 7.1115 27 8 2.4324 -0.3211 8.2135 28 7 1.6714 -0.4912 6.0834 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7993 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1488 0.8596 -2.3517 35 1 0.5110 0.4442 -4.9368 36 1 2.0325 1.3635 -4.8474 37 1 2.7017 -0.9403 -10.2287 38 1 3.1264 -0.7994 1.2055 39 1 1.6055 -1.7198 1.2951 40 1 1.1484 0.8590 2.3518 41 1 2.2200 2.4547 4.7475 42 1 3.5761 1.2782 4.7324 43 1 1.9342 2.2801 7.0806 44 1 3.6545 1.7817 7.0375 45 1 1.3439 -1.4035 6.1232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500088597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:04 Heat of formation + Delta-G solvation = -120.403997 kcal Electronic energy + Delta-G solvation = -26044.191594 eV Core-core repulsion = 21994.357519 eV Total energy + Delta-G solvation = -4049.834075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37273 -39.80805 -39.27537 -37.34469 -36.59043 -34.72952 -32.58658 -32.45673 -31.90915 -29.61621 -29.08051 -27.12832 -25.69724 -25.25401 -23.22043 -21.30225 -21.14788 -20.82235 -20.44566 -18.42606 -17.92859 -17.79367 -16.81263 -16.46985 -16.22289 -16.15651 -15.73477 -15.43006 -15.09430 -14.83425 -14.65544 -14.32373 -14.22989 -13.93071 -13.86864 -13.77804 -13.38560 -13.22345 -13.13872 -12.99900 -12.60971 -12.56618 -12.00392 -11.84156 -11.69671 -11.48573 -11.34902 -11.09303 -11.05814 -10.79730 -10.67444 -10.42375 -9.85317 -9.72055 -9.65444 -9.47654 -9.10506 -8.97268 -8.27432 -6.53802 -6.24842 -3.95833 1.90770 1.99633 2.34628 2.84805 3.01185 3.03676 3.19631 3.25431 3.29045 3.63991 3.64320 3.68946 3.95919 4.17125 4.19486 4.28435 4.32891 4.36658 4.40814 4.66910 4.91745 4.96509 5.07227 5.08492 5.10411 5.17403 5.19989 5.24115 5.34097 5.44105 5.55014 5.59236 5.75142 5.79535 5.83295 5.87362 6.08206 6.12731 6.42637 6.51291 6.82248 7.54173 7.56011 7.61504 7.69103 8.31713 8.54467 9.20441 10.82575 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.001384 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.399931 B =20223.277334 C =20514.026121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 H 0.086 0.914 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.125 3.875 19 N -0.722 5.722 20 C 0.503 3.497 21 O -0.523 6.523 22 C 0.114 3.886 23 H 0.107 0.893 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.523 3.477 27 O -0.529 6.529 28 N -0.711 5.711 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 9.574 29.155 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.104 0.896 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.001 3.999 19 N -0.375 5.375 20 C 0.287 3.713 21 O -0.398 6.398 22 C 0.004 3.996 23 H 0.124 0.876 24 C -0.160 4.160 25 C -0.195 4.195 26 C 0.309 3.691 27 O -0.404 6.404 28 N -0.367 5.367 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.237 0.763 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.098 6.818 29.487 30.541 hybrid contribution -1.817 2.323 -0.929 3.092 sum -5.915 9.141 28.558 30.564 Atomic orbital electron populations 1.21903 0.93934 1.02955 1.02025 1.21597 0.97145 1.00768 0.93848 0.89586 1.21161 1.00330 0.95436 0.82748 1.45959 1.59822 1.28105 1.05454 1.20319 0.78682 0.85498 0.83770 1.90717 1.38242 1.23837 1.86157 1.23529 1.04789 1.03444 0.98640 1.85428 1.72790 1.32970 0.92155 1.22863 1.41604 1.11247 0.92790 0.90928 1.24990 0.94835 0.95775 0.97934 1.70013 1.37447 1.24546 1.18223 0.86169 0.79076 0.80072 0.80179 1.20262 1.20730 1.19711 1.21358 1.00781 0.95427 0.82320 1.45932 1.57901 1.27977 1.05647 1.20676 0.80008 0.85991 0.84614 1.90791 1.38694 1.23945 1.86384 1.21592 1.01725 0.91438 0.84808 0.87559 1.22629 0.99892 0.97500 0.95986 1.22381 1.05464 0.95817 0.95861 1.20843 0.76133 0.88331 0.83806 1.90791 1.55171 1.72621 1.21848 1.45957 1.62224 1.17217 1.11306 0.91772 0.91883 0.92538 0.91217 0.91158 0.76844 0.89238 0.89234 0.92146 0.90633 0.90622 0.76255 0.87898 0.89164 0.87162 0.87375 0.74375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.94 37.16 0.33 -0.34 16 2 C -0.11 -0.58 2.46 -90.62 -0.22 -0.81 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 4 C 0.13 1.21 5.07 -4.04 -0.02 1.19 16 5 N -0.74 -8.39 5.28 -60.29 -0.32 -8.71 16 6 C 0.53 9.26 7.85 -10.98 -0.09 9.18 16 7 O -0.52 -11.29 15.86 5.56 0.09 -11.20 16 8 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 14 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 C 0.13 0.72 5.06 -4.04 -0.02 0.70 16 19 N -0.72 -2.74 5.28 -60.30 -0.32 -3.06 16 20 C 0.50 3.05 7.02 -10.99 -0.08 2.97 16 21 O -0.52 -5.78 16.58 5.56 0.09 -5.68 16 22 C 0.11 0.38 3.92 -68.17 -0.27 0.11 16 23 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 24 C -0.12 -0.22 6.68 -25.10 -0.17 -0.39 16 25 C -0.16 -0.52 6.86 -26.74 -0.18 -0.70 16 26 C 0.52 4.11 8.43 -10.86 -0.09 4.02 16 27 O -0.53 -6.65 18.03 5.56 0.10 -6.55 16 28 N -0.71 -4.43 5.47 -53.88 -0.29 -4.72 16 29 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.14 7.18 -51.93 -0.37 -0.23 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.26 7.66 -40.82 -0.31 2.95 16 35 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 36 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 0.30 7.65 -40.82 -0.31 -0.01 16 41 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 42 H 0.09 0.27 7.91 -51.93 -0.41 -0.14 16 43 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.42 2.76 8.96 -40.82 -0.37 2.40 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -40.20 394.96 -8.35 -48.55 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.76 Total: -2.16 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.39 Total: 0.50 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.20 Total: -41.56 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.28 Total: -23.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.20 -8.35 -48.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500088597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.857 kcal (2) G-P(sol) polarization free energy of solvation -40.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds