Wall clock time and date at job start Wed Apr 1 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46975 * 2 1 4 4 C 1.52997 * 109.47352 * 239.99982 * 2 1 3 5 5 N 1.46500 * 109.47287 * 185.00286 * 4 2 1 6 6 C 1.34777 * 120.00215 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99709 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00101 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.73325 * 59.59124 * 8 6 5 10 10 C 1.53342 * 109.60367 * 179.97438 * 8 6 5 11 11 C 1.53064 * 108.42647 * 187.28393 * 10 8 6 12 12 C 1.50177 * 109.89517 * 311.10264 * 11 10 8 13 13 O 1.21283 * 118.24537 * 197.57861 * 12 11 10 14 14 N 1.33356 * 123.50508 * 17.86251 * 12 11 10 15 15 C 1.45768 * 124.09246 * 357.20044 * 14 12 11 16 16 N 1.46500 * 109.47161 * 119.99841 * 2 1 3 17 17 C 1.34773 * 119.99877 * 275.00255 * 16 2 1 18 18 O 1.21288 * 120.00284 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00067 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.47264 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99795 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99790 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99904 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99881 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00208 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47053 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47364 * 120.00381 * 25 23 21 28 28 H 1.48501 * 109.47061 * 240.00262 * 25 23 21 29 29 H 1.09003 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47436 * 300.00258 * 1 2 3 31 31 H 1.09010 * 109.47301 * 60.00198 * 1 2 3 32 32 H 1.09002 * 109.47573 * 64.99985 * 4 2 1 33 33 H 1.09004 * 109.47055 * 304.99794 * 4 2 1 34 34 H 0.97006 * 119.99874 * 359.97438 * 5 4 2 35 35 H 1.09005 * 109.67375 * 67.55656 * 10 8 6 36 36 H 1.09000 * 109.67603 * 307.02331 * 10 8 6 37 37 H 1.09000 * 109.40587 * 190.96911 * 11 10 8 38 38 H 1.09005 * 109.32835 * 71.19019 * 11 10 8 39 39 H 0.97000 * 117.94182 * 177.47749 * 14 12 11 40 40 H 1.09000 * 109.51361 * 259.18305 * 15 14 12 41 41 H 1.09000 * 109.15617 * 139.76044 * 15 14 12 42 42 H 0.96998 * 120.00018 * 95.00017 * 16 2 1 43 43 H 1.08997 * 109.47112 * 300.00237 * 19 17 16 44 44 H 1.09005 * 109.47024 * 60.00021 * 19 17 16 45 45 H 0.96995 * 120.00242 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1911 7 8 3.5700 -1.8833 -3.1398 8 6 5.6750 -1.5360 -2.1309 9 1 5.9688 -2.0922 -1.2408 10 6 6.1895 -2.2586 -3.3817 11 6 7.6886 -2.5156 -3.2097 12 6 8.3767 -1.2539 -2.7739 13 8 9.5808 -1.1833 -2.9013 14 7 7.7353 -0.2091 -2.2492 15 6 6.2885 -0.1358 -2.0872 16 7 2.0183 -0.6906 1.1962 17 6 2.1469 -0.0182 2.3571 18 8 1.8580 1.1585 2.4117 19 6 2.6487 -0.7287 3.5878 20 16 2.7104 0.4346 4.9731 21 6 3.3135 -0.6306 6.2405 22 1 3.5228 -1.6670 6.0205 23 6 3.5206 -0.1375 7.5213 24 7 3.2660 1.1259 7.7892 25 14 4.1606 -1.2665 8.8647 26 1 4.3654 -2.6289 8.3104 27 1 5.4510 -0.7418 9.3793 28 1 3.1736 -1.3267 9.9726 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 3.9824 -0.4622 -0.4318 35 1 6.0226 -1.6354 -4.2603 36 1 5.6657 -3.2072 -3.4991 37 1 8.1101 -2.8488 -4.1581 38 1 7.8380 -3.2885 -2.4558 39 1 8.2643 0.5511 -1.9608 40 1 5.8627 0.4691 -2.8878 41 1 6.0590 0.3283 -1.1280 42 1 2.2490 -1.6317 1.1527 43 1 1.9759 -1.5505 3.8326 44 1 3.6479 -1.1212 3.3987 45 1 3.4103 1.4705 8.6844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502028721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:37 Heat of formation + Delta-G solvation = -125.751760 kcal Electronic energy + Delta-G solvation = -27164.637798 eV Core-core repulsion = 23114.571826 eV Total energy + Delta-G solvation = -4050.065972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12346 -40.00603 -39.35141 -36.85257 -36.36508 -34.04248 -33.46202 -32.49847 -31.70886 -30.49888 -28.69833 -26.71971 -25.55693 -25.21741 -23.56707 -21.95374 -21.08638 -20.49136 -19.63651 -18.33789 -17.88860 -17.12555 -16.87509 -16.70814 -16.31043 -15.99124 -15.77145 -15.35307 -15.01733 -14.86809 -14.64599 -14.47528 -14.28965 -14.11359 -13.82020 -13.41329 -13.22680 -13.05593 -12.85163 -12.65119 -12.41150 -12.27228 -12.16675 -11.97743 -11.73811 -11.54163 -11.27190 -11.12454 -11.09340 -10.81592 -10.32371 -10.15686 -9.88063 -9.63152 -9.57328 -9.48299 -9.17162 -9.11201 -8.32598 -6.58639 -6.28967 -4.00201 2.09834 2.24816 2.58825 2.83802 2.89087 2.94805 3.16737 3.23038 3.27032 3.57914 3.95189 4.02531 4.09979 4.13453 4.21890 4.29082 4.66843 4.71011 4.78231 4.81560 4.92244 4.98134 5.04099 5.06817 5.11381 5.23457 5.29661 5.36305 5.45068 5.45863 5.55490 5.62698 5.76281 5.81645 5.88551 6.02722 6.07651 6.31187 6.44709 6.84753 6.99297 7.50978 7.53457 7.71856 7.78838 8.28227 8.44109 9.16893 10.78446 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.002472 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.356984 B =11326.299342 C =13461.863590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.727 5.727 6 C 0.525 3.475 7 O -0.532 6.532 8 C -0.128 4.128 9 H 0.111 0.889 10 C -0.103 4.103 11 C -0.136 4.136 12 C 0.519 3.481 13 O -0.556 6.556 14 N -0.718 5.718 15 C 0.119 3.881 16 N -0.738 5.738 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.155 4.155 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.404 0.596 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -6.359 -22.478 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.380 5.380 6 C 0.309 3.691 7 O -0.408 6.408 8 C -0.149 4.149 9 H 0.129 0.871 10 C -0.141 4.141 11 C -0.176 4.176 12 C 0.306 3.694 13 O -0.434 6.434 14 N -0.371 5.371 15 C -0.006 4.006 16 N -0.394 5.394 17 C 0.319 3.681 18 O -0.387 6.387 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.241 0.759 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.240 0.760 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.838 -4.723 -23.082 23.575 hybrid contribution 1.054 -2.017 1.465 2.706 sum 1.892 -6.740 -21.618 22.723 Atomic orbital electron populations 1.22119 0.94094 1.02595 1.03273 1.21142 0.95125 0.97869 0.83241 0.88629 1.21751 0.79647 1.01757 0.98050 1.46064 1.08036 1.59850 1.24004 1.20207 0.89012 0.77642 0.82191 1.90738 1.69940 1.47117 1.33003 1.21685 0.92424 0.98232 1.02599 0.87078 1.21502 0.93824 1.02366 0.96429 1.21701 0.95564 0.95583 1.04755 1.20258 0.87533 0.85183 0.76436 1.90786 1.15023 1.82176 1.55422 1.45403 1.07828 1.20105 1.63732 1.21301 0.80395 0.95685 1.03207 1.46167 1.69661 1.14036 1.09519 1.20352 0.76791 0.87231 0.83685 1.90719 1.47946 1.15749 1.84248 1.23543 1.03630 1.04966 0.98388 1.85409 1.86379 1.12675 0.98829 1.22891 1.50985 0.98156 0.96379 0.90883 1.24996 0.95046 0.95545 0.97988 1.70018 1.45484 1.13202 1.21524 0.86116 0.78561 0.80111 0.80710 1.19609 1.20528 1.20540 0.92170 0.90999 0.91479 0.89794 0.90603 0.75871 0.90301 0.89223 0.87542 0.87819 0.75963 0.90767 0.89574 0.76735 0.89199 0.89278 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.15 0.35 -1.04 16 2 C 0.13 1.13 2.73 -67.93 -0.19 0.95 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 4 C 0.11 0.76 5.23 -4.04 -0.02 0.74 16 5 N -0.73 -4.60 5.30 -60.29 -0.32 -4.92 16 6 C 0.52 3.89 7.13 -10.99 -0.08 3.81 16 7 O -0.53 -5.82 15.90 5.56 0.09 -5.73 16 8 C -0.13 -0.69 2.60 -91.63 -0.24 -0.93 16 9 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 10 C -0.10 -0.60 4.71 -26.52 -0.12 -0.72 16 11 C -0.14 -0.83 6.03 -28.10 -0.17 -1.00 16 12 C 0.52 4.68 7.71 -11.87 -0.09 4.59 16 13 O -0.56 -7.51 17.78 5.55 0.10 -7.41 16 14 N -0.72 -4.82 5.45 -61.37 -0.33 -5.16 16 15 C 0.12 0.58 6.33 -4.47 -0.03 0.56 16 16 N -0.74 -7.49 4.52 -53.81 -0.24 -7.73 16 17 C 0.53 8.39 7.81 -10.99 -0.09 8.30 16 18 O -0.51 -10.17 15.53 5.55 0.09 -10.08 16 19 C -0.15 -2.78 6.16 36.01 0.22 -2.56 16 20 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 21 C -0.54 -14.63 9.50 30.94 0.29 -14.34 16 22 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 23 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 24 N -0.87 -25.39 13.22 55.49 0.73 -24.66 16 25 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.41 2.28 7.82 -40.82 -0.32 1.96 16 35 H 0.08 0.51 8.13 -51.93 -0.42 0.08 16 36 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.40 2.54 8.80 -40.82 -0.36 2.18 16 40 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 41 H 0.09 0.32 7.88 -51.93 -0.41 -0.09 16 42 H 0.40 3.14 8.60 -40.82 -0.35 2.79 16 43 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 44 H 0.09 1.45 8.14 -51.91 -0.42 1.02 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -37.17 392.40 -8.32 -45.49 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.86 Total: 1.97 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.25 Total: 0.29 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.16 Total: -42.46 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.27 Total: -23.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.17 -8.32 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502028721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.258 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds