Wall clock time and date at job start Wed Apr 1 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00327 * 2 1 4 4 N 1.34780 * 120.00165 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00144 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47047 * 325.00007 * 5 4 2 7 7 C 1.52995 * 109.47209 * 85.00142 * 5 4 2 8 8 C 1.50697 * 109.46667 * 205.00187 * 5 4 2 9 9 O 1.21278 * 120.00482 * 359.97438 * 8 5 4 10 10 N 1.34782 * 119.99750 * 180.02562 * 8 5 4 11 11 C 1.46496 * 119.99855 * 179.97438 * 10 8 5 12 12 C 1.53003 * 109.47232 * 174.83969 * 11 10 8 13 13 H 1.09006 * 112.96515 * 51.05444 * 12 11 10 14 14 C 1.53941 * 113.77400 * 182.73627 * 12 11 10 15 15 C 1.53941 * 86.29147 * 137.90764 * 14 12 11 16 16 N 1.47578 * 86.11732 * 336.39487 * 15 14 12 17 17 C 1.34779 * 134.48981 * 204.63994 * 16 15 14 18 18 O 1.21286 * 119.99983 * 185.04317 * 17 16 15 19 19 C 1.50695 * 120.00456 * 5.04637 * 17 16 15 20 20 S 1.80998 * 109.47287 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99867 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00290 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99703 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99879 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00317 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47276 * 90.00074 * 25 23 21 27 27 H 1.48503 * 109.47054 * 209.99899 * 25 23 21 28 28 H 1.48506 * 109.47159 * 329.99931 * 25 23 21 29 29 H 1.08996 * 109.47549 * 270.00616 * 1 2 3 30 30 H 1.09008 * 109.46841 * 30.00522 * 1 2 3 31 31 H 1.08995 * 109.47347 * 149.99754 * 1 2 3 32 32 H 0.97001 * 119.99232 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.47226 * 59.99975 * 7 5 4 34 34 H 1.09001 * 109.47441 * 299.99881 * 7 5 4 35 35 H 1.08995 * 109.47075 * 180.02562 * 7 5 4 36 36 H 0.97003 * 119.99879 * 359.97438 * 10 8 5 37 37 H 1.08997 * 109.47110 * 294.83457 * 11 10 8 38 38 H 1.09002 * 109.47696 * 54.83869 * 11 10 8 39 39 H 1.09005 * 113.74192 * 252.25403 * 14 12 11 40 40 H 1.08999 * 113.74163 * 23.56413 * 14 12 11 41 41 H 1.09000 * 113.77170 * 90.69805 * 15 14 12 42 42 H 1.09005 * 113.77071 * 222.09221 * 15 14 12 43 43 H 1.08993 * 109.47040 * 300.00033 * 19 17 16 44 44 H 1.09007 * 109.47122 * 59.99621 * 19 17 16 45 45 H 0.96998 * 120.00440 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3255 -0.5884 7 6 4.1553 -1.0412 1.4382 8 6 4.1483 -2.4550 -0.5989 9 8 3.3604 -3.2907 -0.9882 10 7 5.4735 -2.6785 -0.7020 11 6 5.9619 -3.9307 -1.2848 12 6 7.4866 -3.8780 -1.4022 13 1 7.9752 -3.5907 -0.4711 14 6 8.1012 -5.1230 -2.0670 15 6 9.0156 -4.1437 -2.8251 16 7 7.9669 -3.1341 -2.5828 17 6 7.5965 -1.9915 -3.1943 18 8 6.7283 -1.2977 -2.7088 19 6 8.2612 -1.5760 -4.4814 20 16 7.5507 -0.0112 -5.0495 21 6 8.4827 0.2300 -6.5253 22 1 9.2287 -0.4943 -6.8174 23 6 8.2590 1.3515 -7.3119 24 7 8.9555 1.5319 -8.4141 25 14 6.9693 2.6047 -6.8064 26 1 7.5957 3.6399 -5.9454 27 1 6.4011 3.2469 -8.0189 28 1 5.8858 1.9237 -6.0530 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0072 0.0005 33 1 3.7918 -1.8829 2.0277 34 1 3.7919 -0.1097 1.8723 35 1 5.2453 -1.0407 1.4386 36 1 6.1037 -2.0102 -0.3903 37 1 5.6755 -4.7653 -0.6449 38 1 5.5258 -4.0653 -2.2746 39 1 8.6339 -5.7732 -1.3730 40 1 7.4079 -5.6640 -2.7110 41 1 9.9546 -3.9335 -2.3130 42 1 9.1503 -4.3935 -3.8775 43 1 9.3308 -1.4501 -4.3138 44 1 8.0999 -2.3438 -5.2380 45 1 8.7995 2.3158 -8.9637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505601280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:23 Heat of formation + Delta-G solvation = -75.576264 kcal Electronic energy + Delta-G solvation = -27810.772896 eV Core-core repulsion = 23762.882697 eV Total energy + Delta-G solvation = -4047.890199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73934 -40.18579 -39.02618 -37.57799 -35.16006 -34.78085 -32.45443 -31.85815 -30.87145 -29.30911 -28.34803 -28.26644 -25.62494 -24.83660 -23.21181 -22.15074 -20.82565 -20.39434 -19.11909 -18.07368 -17.68495 -17.03387 -16.78084 -16.28427 -15.97703 -15.86531 -15.45746 -15.12284 -14.99088 -14.91590 -14.40145 -14.03356 -13.88500 -13.79464 -13.49275 -13.08039 -12.86870 -12.82455 -12.70392 -12.60041 -12.53199 -12.30568 -12.27956 -12.09940 -11.76713 -11.70784 -11.34367 -11.25745 -11.01259 -10.62838 -10.08762 -9.98693 -9.85973 -9.49172 -9.32892 -9.16733 -9.01550 -8.77279 -8.51759 -6.93705 -6.30374 -4.02401 2.38661 2.48036 2.54350 2.72754 2.88192 3.05848 3.30618 3.33133 3.51281 3.55802 4.05592 4.31835 4.40754 4.46938 4.50411 4.66974 4.67775 4.83465 4.84999 4.98499 4.99486 5.02300 5.04888 5.08943 5.16866 5.22097 5.29509 5.31702 5.42614 5.53355 5.55361 5.66342 5.70741 5.82187 5.84488 5.97154 5.99342 6.17846 6.26231 7.32591 7.34299 7.64908 7.92673 8.02472 8.07894 8.36680 8.39689 9.15902 10.78847 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008096 B = 0.003622 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3457.769067 B = 7727.793752 C =10700.314484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.714 5.714 5 C 0.122 3.878 6 H 0.120 0.880 7 C -0.156 4.156 8 C 0.520 3.480 9 O -0.548 6.548 10 N -0.705 5.705 11 C 0.122 3.878 12 C 0.121 3.879 13 H 0.098 0.902 14 C -0.142 4.142 15 C 0.102 3.898 16 N -0.648 5.648 17 C 0.554 3.446 18 O -0.510 6.510 19 C -0.116 4.116 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -15.087 21.046 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.368 5.368 5 C 0.014 3.986 6 H 0.137 0.863 7 C -0.214 4.214 8 C 0.305 3.695 9 O -0.426 6.426 10 N -0.356 5.356 11 C -0.003 4.003 12 C 0.017 3.983 13 H 0.115 0.885 14 C -0.180 4.180 15 C -0.021 4.021 16 N -0.388 5.388 17 C 0.343 3.657 18 O -0.384 6.384 19 C -0.267 4.267 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.321 -13.579 21.189 26.506 hybrid contribution 0.905 -0.203 -0.653 1.134 sum -7.416 -13.783 20.535 25.820 Atomic orbital electron populations 1.21861 0.91292 1.05162 1.04686 1.20846 0.90733 0.83208 0.75306 1.90754 1.70688 1.31325 1.49310 1.45839 1.05749 1.09648 1.75574 1.20750 0.82114 0.97392 0.98377 0.86253 1.22099 1.01633 1.03300 0.94406 1.20416 0.82656 0.87987 0.78405 1.90668 1.55366 1.46788 1.49753 1.45670 1.06816 1.20618 1.62523 1.21516 0.92241 0.86598 0.99899 1.23046 0.94199 0.90005 0.91080 0.88461 1.23550 0.99025 0.95702 0.99715 1.23123 0.92214 0.84834 1.01953 1.50241 1.35240 1.23703 1.29633 1.20031 0.82510 0.77884 0.85278 1.90685 1.31424 1.50463 1.65831 1.23207 1.03478 1.03684 0.96309 1.84822 1.53249 1.22978 1.30303 1.22299 1.24691 1.12542 1.07390 0.89429 1.24700 0.95635 0.97070 0.93806 1.69933 1.39732 1.28677 1.13332 0.86750 0.83324 0.82539 0.79334 1.19155 1.19873 1.15952 0.88856 0.88682 0.90014 0.75474 0.91952 0.90787 0.91022 0.75775 0.90309 0.90555 0.89319 0.88470 0.89531 0.89564 0.88802 0.88733 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.30 36.00 0.37 -0.92 16 2 C 0.51 6.23 7.90 -10.99 -0.09 6.14 16 3 O -0.54 -9.06 16.76 5.56 0.09 -8.97 16 4 N -0.71 -8.07 4.95 -54.94 -0.27 -8.34 16 5 C 0.12 1.49 2.98 -69.09 -0.21 1.29 16 6 H 0.12 1.78 7.58 -51.93 -0.39 1.39 16 7 C -0.16 -1.44 9.38 37.15 0.35 -1.10 16 8 C 0.52 6.87 7.22 -10.98 -0.08 6.79 16 9 O -0.55 -8.53 15.83 5.56 0.09 -8.44 16 10 N -0.71 -8.17 4.17 -60.30 -0.25 -8.43 16 11 C 0.12 1.25 5.33 -4.04 -0.02 1.23 16 12 C 0.12 1.01 4.27 -66.87 -0.29 0.72 16 13 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 14 C -0.14 -0.82 7.86 -25.81 -0.20 -1.02 16 15 C 0.10 0.79 8.61 -2.98 -0.03 0.76 16 16 N -0.65 -7.69 3.49 -171.21 -0.60 -8.28 16 17 C 0.55 9.48 7.94 -10.99 -0.09 9.39 16 18 O -0.51 -10.17 14.48 5.55 0.08 -10.09 16 19 C -0.12 -2.25 5.91 36.00 0.21 -2.04 16 20 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 21 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 23 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 24 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 25 Si 0.86 22.19 27.74 -169.99 -4.71 17.47 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.24 -6.16 6.74 56.52 0.38 -5.78 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.41 4.00 7.79 -40.82 -0.32 3.68 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 36 H 0.41 4.48 7.37 -40.82 -0.30 4.18 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -38.61 394.74 -7.59 -46.20 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.90 Total: 5.25 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.15 Total: 9.21 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.35 Total: -51.02 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.26 Total: -27.50 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.61 -7.59 -46.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505601280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.379 kcal (2) G-P(sol) polarization free energy of solvation -38.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds