Wall clock time and date at job start Wed Apr 1 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 120.00273 * 2 1 4 4 N 1.34776 * 120.00396 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00433 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47179 * 34.99435 * 5 4 2 7 7 C 1.53002 * 109.47054 * 275.00057 * 5 4 2 8 8 C 1.50694 * 109.47357 * 154.99786 * 5 4 2 9 9 O 1.21283 * 120.00401 * 0.02562 * 8 5 4 10 10 N 1.34781 * 120.00193 * 180.02562 * 8 5 4 11 11 C 1.46504 * 120.00113 * 179.97438 * 10 8 5 12 12 C 1.52995 * 109.46821 * 185.11309 * 11 10 8 13 13 H 1.08996 * 112.96972 * 308.97963 * 12 11 10 14 14 C 1.53951 * 113.76472 * 177.30412 * 12 11 10 15 15 C 1.53947 * 86.28623 * 221.97873 * 14 12 11 16 16 N 1.47577 * 113.76990 * 80.66090 * 12 11 10 17 17 C 1.34770 * 134.49309 * 319.05356 * 16 12 11 18 18 O 1.21279 * 120.00024 * 4.99207 * 17 16 12 19 19 C 1.50705 * 120.00087 * 184.99372 * 17 16 12 20 20 S 1.80997 * 109.47229 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00211 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99525 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00012 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00218 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99978 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47002 * 59.99377 * 25 23 21 27 27 H 1.48495 * 109.47243 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47065 * 299.99851 * 25 23 21 29 29 H 1.08995 * 109.47265 * 269.99402 * 1 2 3 30 30 H 1.09005 * 109.47476 * 30.00020 * 1 2 3 31 31 H 1.09011 * 109.46917 * 149.99478 * 1 2 3 32 32 H 0.97003 * 119.99713 * 359.97438 * 4 2 1 33 33 H 1.09005 * 109.47133 * 299.99672 * 7 5 4 34 34 H 1.08993 * 109.47358 * 59.99500 * 7 5 4 35 35 H 1.08997 * 109.47191 * 180.02562 * 7 5 4 36 36 H 0.96999 * 119.99570 * 359.97438 * 10 8 5 37 37 H 1.08999 * 109.46721 * 65.11216 * 11 10 8 38 38 H 1.08998 * 109.46675 * 305.11483 * 11 10 8 39 39 H 1.08995 * 113.74088 * 336.32473 * 14 12 11 40 40 H 1.09003 * 113.74230 * 107.63911 * 14 12 11 41 41 H 1.09002 * 113.76880 * 137.91509 * 15 14 12 42 42 H 1.08999 * 113.77251 * 269.19227 * 15 14 12 43 43 H 1.09000 * 109.47500 * 299.99999 * 19 17 16 44 44 H 1.08998 * 109.46817 * 59.99902 * 19 17 16 45 45 H 0.97001 * 119.99617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0090 -0.3257 0.5901 7 6 4.1564 -1.0405 -1.4367 8 6 4.1480 -2.4552 0.5999 9 8 3.3598 -3.2912 0.9882 10 7 5.4731 -2.6782 0.7048 11 6 5.9612 -3.9302 1.2884 12 6 7.4857 -3.8773 1.4068 13 1 7.9748 -3.5898 0.4761 14 6 8.0999 -5.1226 2.0716 15 6 9.0158 -4.1436 2.8283 16 7 7.9652 -3.1308 2.5860 17 6 7.5934 -1.9878 3.1956 18 8 6.6083 -1.3908 2.8161 19 6 8.4017 -1.4515 4.3490 20 16 7.6536 0.0841 4.9476 21 6 8.7683 0.4786 6.2540 22 1 9.6065 -0.1696 6.4628 23 6 8.5684 1.6218 7.0153 24 7 7.5465 2.4115 6.7611 25 14 9.7505 2.0403 8.3999 26 1 11.1186 2.2113 7.8480 27 1 9.3199 3.3020 9.0540 28 1 9.7533 0.9407 9.3978 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5140 32 1 1.6959 -2.0072 -0.0005 33 1 3.7933 -1.8819 -2.0269 34 1 3.7932 -0.1089 -1.8706 35 1 5.2464 -1.0409 -1.4363 36 1 6.1035 -2.0098 0.3938 37 1 5.6751 -4.7650 0.6487 38 1 5.5243 -4.0643 2.2780 39 1 7.4067 -5.6627 2.7165 40 1 8.6316 -5.7735 1.3775 41 1 9.1514 -4.3930 3.8807 42 1 9.9553 -3.9358 2.3162 43 1 8.4178 -2.1861 5.1541 44 1 9.4209 -1.2535 4.0174 45 1 7.4071 3.2107 7.2930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505601281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:26 Heat of formation + Delta-G solvation = -75.017419 kcal Electronic energy + Delta-G solvation = -27709.516389 eV Core-core repulsion = 23661.650423 eV Total energy + Delta-G solvation = -4047.865966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64247 -40.08928 -38.93787 -37.44712 -35.07682 -34.69513 -32.43818 -31.77902 -30.75578 -29.23180 -28.27155 -28.13080 -25.48576 -24.75785 -23.14139 -22.06010 -20.74952 -20.31640 -19.03250 -18.00260 -17.62584 -16.95271 -16.65498 -16.19431 -15.89948 -15.77221 -15.37531 -15.01605 -14.89580 -14.81075 -14.28924 -14.06847 -13.81396 -13.70319 -13.38010 -13.05849 -12.83823 -12.71082 -12.53443 -12.50356 -12.44034 -12.21401 -12.20259 -11.96417 -11.68088 -11.63262 -11.27168 -11.04795 -11.04635 -10.77581 -10.00537 -9.90244 -9.84159 -9.36091 -9.24441 -9.07564 -9.06860 -8.67290 -8.25403 -6.51387 -6.22056 -3.93332 2.47830 2.60827 2.63979 2.82696 3.01948 3.22014 3.22598 3.28132 3.37513 3.53709 4.11665 4.19392 4.50043 4.55164 4.62465 4.73758 4.75725 4.91414 4.98259 5.05947 5.07077 5.10027 5.12900 5.24738 5.27176 5.31658 5.38598 5.45697 5.54464 5.60681 5.64203 5.73070 5.80927 5.91266 5.93203 6.07207 6.12245 6.25854 6.34545 7.40457 7.42144 7.58047 7.75596 8.10812 8.16179 8.33908 8.50601 9.22785 10.85187 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008901 B = 0.003142 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.786346 B = 8910.676943 C =11598.292002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.543 6.543 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.121 0.879 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.549 6.549 10 N -0.704 5.704 11 C 0.124 3.876 12 C 0.120 3.880 13 H 0.097 0.903 14 C -0.142 4.142 15 C 0.103 3.897 16 N -0.650 5.650 17 C 0.554 3.446 18 O -0.506 6.506 19 C -0.146 4.146 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.866 5.866 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.405 0.595 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -16.452 -17.092 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.420 6.420 4 N -0.368 5.368 5 C 0.013 3.987 6 H 0.138 0.862 7 C -0.214 4.214 8 C 0.307 3.693 9 O -0.427 6.427 10 N -0.354 5.354 11 C -0.001 4.001 12 C 0.016 3.984 13 H 0.115 0.885 14 C -0.180 4.180 15 C -0.020 4.020 16 N -0.390 5.390 17 C 0.344 3.656 18 O -0.379 6.379 19 C -0.296 4.296 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.240 0.760 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.314 -15.021 -17.201 23.446 hybrid contribution 2.190 -0.464 1.383 2.631 sum -3.124 -15.485 -15.818 22.355 Atomic orbital electron populations 1.21858 0.91342 1.04697 1.05045 1.20837 0.90714 0.83234 0.75355 1.90761 1.70658 1.31297 1.49236 1.45830 1.05752 1.09616 1.75599 1.20754 0.82108 0.97444 0.98347 0.86175 1.22098 1.01590 1.03270 0.94445 1.20397 0.82633 0.87950 0.78347 1.90662 1.55349 1.46814 1.49866 1.45622 1.06783 1.20583 1.62439 1.21488 0.92246 0.86496 0.99866 1.23029 0.94253 0.90068 0.91083 0.88530 1.23540 0.99026 0.95720 0.99711 1.23145 0.92283 0.84873 1.01745 1.50355 1.35031 1.23716 1.29921 1.20066 0.84771 0.77554 0.83235 1.90707 1.25871 1.56405 1.64948 1.23481 1.02722 1.05397 0.98030 1.85420 1.37807 1.19315 1.40574 1.22808 1.14347 1.12426 1.18966 0.91053 1.24990 0.95904 0.95139 0.97495 1.70009 1.27608 1.13365 1.39169 0.86228 0.80449 0.77882 0.80966 1.19942 1.20765 1.19945 0.88625 0.88825 0.90214 0.75527 0.92013 0.90777 0.91054 0.75971 0.90501 0.90525 0.88548 0.89412 0.89761 0.89680 0.89604 0.89490 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.30 36.00 0.37 -1.01 16 2 C 0.51 6.56 7.90 -10.99 -0.09 6.47 16 3 O -0.54 -9.44 16.76 5.56 0.09 -9.35 16 4 N -0.71 -8.53 4.95 -54.94 -0.27 -8.80 16 5 C 0.12 1.58 2.98 -69.09 -0.21 1.37 16 6 H 0.12 1.90 7.58 -51.93 -0.39 1.50 16 7 C -0.16 -1.53 9.38 37.16 0.35 -1.19 16 8 C 0.52 7.26 7.22 -10.99 -0.08 7.18 16 9 O -0.55 -8.93 15.83 5.55 0.09 -8.84 16 10 N -0.70 -8.65 4.07 -60.30 -0.25 -8.90 16 11 C 0.12 1.35 5.22 -4.04 -0.02 1.33 16 12 C 0.12 1.07 4.28 -66.87 -0.29 0.79 16 13 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 14 C -0.14 -0.89 7.86 -25.79 -0.20 -1.09 16 15 C 0.10 0.85 8.64 -2.78 -0.02 0.82 16 16 N -0.65 -8.18 3.50 -170.06 -0.60 -8.78 16 17 C 0.55 10.03 7.99 -10.99 -0.09 9.94 16 18 O -0.51 -10.72 14.40 5.56 0.08 -10.64 16 19 C -0.15 -2.95 5.92 36.01 0.21 -2.73 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 25 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.41 4.24 7.79 -40.82 -0.32 3.92 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.41 4.72 7.56 -40.82 -0.31 4.41 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 39 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -39.03 397.43 -8.10 -47.13 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.87 Total: 6.30 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.14 Total: 8.83 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.38 Total: -52.15 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: 0.26 Total: -28.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.03 -8.10 -47.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505601281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.891 kcal (2) G-P(sol) polarization free energy of solvation -39.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds