Wall clock time and date at job start Wed Apr 1 2020 02:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46754 * 124.35357 * 2 1 4 4 C 1.54482 * 105.47608 * 162.98565 * 3 2 1 5 5 C 1.54629 * 101.76290 * 25.41759 * 4 3 2 6 6 H 1.08994 * 110.48312 * 216.39329 * 5 4 3 7 7 C 1.50700 * 110.48588 * 93.88051 * 5 4 3 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.27739 * 7 5 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47306 * 180.02562 * 11 10 9 13 13 N 1.46509 * 109.47304 * 180.02562 * 12 11 10 14 14 C 1.34772 * 119.99926 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99868 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47242 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00180 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99810 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00410 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00433 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99593 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47357 * 89.99528 * 22 20 18 24 24 H 1.48503 * 109.46822 * 209.99642 * 22 20 18 25 25 H 1.48504 * 109.47186 * 329.99512 * 22 20 18 26 26 C 1.34416 * 124.34654 * 180.02562 * 2 1 3 27 27 O 1.21287 * 124.94602 * 0.44232 * 26 2 1 28 28 H 1.09001 * 109.46984 * 89.99638 * 1 2 3 29 29 H 1.08996 * 109.47140 * 209.99576 * 1 2 3 30 30 H 1.09005 * 109.46510 * 329.99840 * 1 2 3 31 31 H 1.09000 * 110.24550 * 43.98291 * 3 2 1 32 32 H 1.09001 * 110.32511 * 282.02952 * 3 2 1 33 33 H 1.08996 * 110.96734 * 267.29784 * 4 3 2 34 34 H 1.09001 * 110.99936 * 143.54925 * 4 3 2 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 5 36 36 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 37 37 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 38 38 H 1.09009 * 109.47378 * 299.99899 * 11 10 9 39 39 H 1.08993 * 109.47209 * 59.99808 * 11 10 9 40 40 H 1.08995 * 109.47215 * 299.99822 * 12 11 10 41 41 H 1.09001 * 109.47513 * 60.00266 * 12 11 10 42 42 H 0.96993 * 119.99778 * 359.97438 * 13 12 11 43 43 H 1.09003 * 109.47039 * 299.99240 * 16 14 13 44 44 H 1.08993 * 109.47358 * 59.99559 * 16 14 13 45 45 H 0.96992 * 120.00065 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7011 0.7485 0.4356 5 6 3.6898 -0.7380 0.0100 6 1 4.2346 -1.3457 0.7324 7 6 4.2838 -0.8972 -1.3659 8 8 4.6852 0.0753 -1.9693 9 7 4.3633 -2.1194 -1.9282 10 6 4.9352 -2.2734 -3.2681 11 6 4.9080 -3.7500 -3.6676 12 6 5.5058 -3.9109 -5.0668 13 7 5.4793 -5.3249 -5.4496 14 6 5.9587 -5.7072 -6.6497 15 8 6.4118 -4.8807 -7.4130 16 6 5.9319 -7.1616 -7.0432 17 16 6.6391 -7.3520 -8.6985 18 6 6.4869 -9.0961 -8.8976 19 1 6.0545 -9.6939 -8.1088 20 6 6.9216 -9.7016 -10.0684 21 7 6.8083 -11.0045 -10.2169 22 14 7.6687 -8.6674 -11.4329 23 1 9.1367 -8.5688 -11.2322 24 1 7.3902 -9.3039 -12.7454 25 1 7.0730 -7.3073 -11.4060 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2443 -0.0087 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3632 0.8900 0.5139 31 1 1.8986 1.9382 0.7102 32 1 2.3310 1.6443 -0.9997 33 1 3.8270 0.8446 1.5140 34 1 4.4759 1.3007 -0.0963 35 1 4.0419 -2.8971 -1.4457 36 1 4.3505 -1.6928 -3.9816 37 1 5.9652 -1.9167 -3.2668 38 1 5.4930 -4.3304 -2.9540 39 1 3.8782 -4.1072 -3.6689 40 1 4.9213 -3.3307 -5.7806 41 1 6.5357 -3.5540 -5.0651 42 1 5.1173 -5.9859 -4.8390 43 1 6.5163 -7.7421 -6.3292 44 1 4.9021 -7.5186 -7.0452 45 1 7.1125 -11.4276 -11.0350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522839378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:25 Heat of formation + Delta-G solvation = -111.538820 kcal Electronic energy + Delta-G solvation = -26100.119332 eV Core-core repulsion = 22050.669680 eV Total energy + Delta-G solvation = -4049.449652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57181 -39.57226 -39.24402 -37.10151 -36.34546 -34.59538 -33.48614 -32.43872 -31.76019 -29.46840 -28.46687 -27.37053 -25.73141 -25.39997 -23.03761 -22.13832 -21.21996 -20.47444 -20.07308 -18.33377 -17.81296 -17.41889 -16.69792 -16.52030 -16.38487 -16.16526 -15.95223 -15.51687 -15.21456 -14.94396 -14.67216 -14.45554 -14.16705 -14.00073 -13.78941 -13.39515 -13.26837 -13.23851 -13.09570 -12.85351 -12.80333 -12.50328 -12.11809 -12.05772 -11.97236 -11.87409 -11.39052 -11.26339 -11.00432 -10.66741 -10.59911 -10.32489 -9.85654 -9.57314 -9.55333 -9.35668 -9.03848 -8.97992 -8.50134 -6.91851 -6.28743 -4.00621 1.69075 2.06892 2.39772 2.62040 2.81536 2.96113 3.31315 3.34827 3.51135 3.58064 3.65244 3.76075 4.07759 4.29961 4.33488 4.43921 4.55387 4.56664 4.62180 4.64393 4.75655 4.78385 4.89570 4.94780 5.10358 5.15425 5.16619 5.23771 5.24701 5.29178 5.38606 5.47244 5.70780 5.78599 5.80180 5.81572 5.91507 6.00927 6.39507 6.47953 6.93167 7.46597 7.57467 7.63706 7.94270 8.41691 8.46962 9.17464 10.80466 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030569 B = 0.001453 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.750445 B =19269.408949 C =19697.006793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.618 5.618 3 C 0.099 3.901 4 C -0.118 4.118 5 C -0.151 4.151 6 H 0.134 0.866 7 C 0.531 3.469 8 O -0.528 6.528 9 N -0.722 5.722 10 C 0.122 3.878 11 C -0.144 4.144 12 C 0.125 3.875 13 N -0.738 5.738 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.527 3.473 27 O -0.520 6.520 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 25.040 27.615 38.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.353 5.353 3 C -0.023 4.023 4 C -0.156 4.156 5 C -0.175 4.175 6 H 0.152 0.848 7 C 0.315 3.685 8 O -0.404 6.404 9 N -0.373 5.373 10 C -0.002 4.002 11 C -0.182 4.182 12 C 0.001 3.999 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.313 3.687 27 O -0.395 6.395 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.899 26.370 25.751 38.164 hybrid contribution -0.585 -1.544 0.820 1.843 sum -10.484 24.826 26.571 37.846 Atomic orbital electron populations 1.21616 0.77285 1.03420 1.02358 1.48132 1.06896 1.07323 1.72907 1.22209 0.90186 0.87127 1.02805 1.22612 0.97853 0.92473 1.02690 1.22169 0.95969 1.01548 0.97842 0.84783 1.19714 0.78806 0.83313 0.86627 1.90732 1.48261 1.38298 1.63113 1.45973 1.63180 1.09399 1.18796 1.21282 0.99692 0.96206 0.83003 1.21984 1.02845 0.96034 0.97384 1.21105 1.01625 0.82985 0.94229 1.45923 1.65658 1.08722 1.18930 1.20288 0.76714 0.90693 0.80679 1.90707 1.44224 1.53743 1.50637 1.23278 1.05751 0.94585 1.03870 1.84797 1.81160 1.11731 1.13877 1.22321 1.48005 0.89535 1.07107 0.89380 1.24710 0.94254 0.94641 0.97669 1.69935 1.45451 1.08827 1.27467 0.86733 0.80948 0.82586 0.81579 1.19200 1.19930 1.15922 1.20272 0.87829 0.84709 0.75931 1.90771 1.78065 1.20736 1.49978 0.92232 0.90381 0.90655 0.89741 0.90285 0.89031 0.87058 0.75677 0.90807 0.90563 0.90266 0.90281 0.91216 0.91153 0.76593 0.88453 0.88420 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.96 59.85 0.66 1.07 16 2 N -0.62 -3.74 3.33 -180.28 -0.60 -4.34 16 3 C 0.10 0.39 7.34 -3.13 -0.02 0.37 16 4 C -0.12 -0.45 6.50 -25.10 -0.16 -0.61 16 5 C -0.15 -0.87 3.33 -91.78 -0.31 -1.18 16 6 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 7 C 0.53 4.40 7.16 -10.98 -0.08 4.33 16 8 O -0.53 -5.89 15.47 5.55 0.09 -5.81 16 9 N -0.72 -5.27 5.53 -60.30 -0.33 -5.60 16 10 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 11 C -0.14 -0.97 5.44 -26.73 -0.15 -1.12 16 12 C 0.13 1.28 5.67 -4.04 -0.02 1.26 16 13 N -0.74 -8.94 5.56 -60.29 -0.33 -9.27 16 14 C 0.53 9.32 7.85 -10.99 -0.09 9.23 16 15 O -0.52 -11.20 15.86 5.55 0.09 -11.11 16 16 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 19 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 22 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 C 0.53 4.19 7.31 -10.86 -0.08 4.11 16 27 O -0.52 -5.74 17.60 5.55 0.10 -5.64 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.40 7.93 -51.93 -0.41 -0.01 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.11 0.52 6.96 -51.93 -0.36 0.16 16 35 H 0.41 2.49 8.47 -40.82 -0.35 2.14 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 43 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -38.52 395.66 -7.76 -46.28 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.96 Total: -0.31 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.17 Total: 4.13 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.49 Total: -45.05 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.27 Total: -22.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.52 -7.76 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522839378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.256 kcal (2) G-P(sol) polarization free energy of solvation -38.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds