Wall clock time and date at job start Wed Apr 1 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47267 * 2 1 4 4 N 1.46504 * 109.46742 * 240.00045 * 2 1 3 5 5 C 1.34784 * 119.99873 * 84.99754 * 4 2 1 6 6 O 1.21355 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.49444 * 119.99972 * 180.27354 * 5 4 2 8 8 N 1.34775 * 119.99865 * 179.72580 * 7 5 4 9 9 O 1.21345 * 119.99994 * 359.72774 * 7 5 4 10 10 C 1.52993 * 109.47400 * 120.00562 * 2 1 3 11 11 H 1.09004 * 109.58551 * 302.55944 * 10 2 1 12 12 C 1.53188 * 109.59281 * 62.99204 * 10 2 1 13 13 C 1.53035 * 109.31599 * 174.42384 * 12 10 2 14 14 C 1.53039 * 109.54051 * 298.63303 * 13 12 10 15 15 C 1.53199 * 109.31036 * 61.36368 * 14 13 12 16 16 N 1.46926 * 108.77481 * 305.36514 * 15 14 13 17 17 C 1.34776 * 120.63048 * 233.62793 * 16 15 14 18 18 O 1.21286 * 119.99529 * 185.94558 * 17 16 15 19 19 C 1.50693 * 120.00051 * 5.94349 * 17 16 15 20 20 S 1.81004 * 109.47163 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00117 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99811 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99938 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99776 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00189 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47125 * 90.00371 * 25 23 21 27 27 H 1.48497 * 109.47321 * 210.00498 * 25 23 21 28 28 H 1.48505 * 109.47199 * 330.00333 * 25 23 21 29 29 H 1.09004 * 109.47210 * 174.95477 * 1 2 3 30 30 H 1.09000 * 109.46770 * 294.95145 * 1 2 3 31 31 H 1.08996 * 109.47528 * 54.95130 * 1 2 3 32 32 H 0.96995 * 120.00241 * 265.00125 * 4 2 1 33 33 H 0.96995 * 120.00047 * 0.02562 * 8 7 5 34 34 H 0.97000 * 119.99924 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.49561 * 294.37805 * 12 10 2 36 36 H 1.08999 * 109.49531 * 54.47013 * 12 10 2 37 37 H 1.09002 * 109.46077 * 178.61060 * 13 12 10 38 38 H 1.09002 * 109.45851 * 58.65650 * 13 12 10 39 39 H 1.08998 * 109.49795 * 301.41745 * 14 13 12 40 40 H 1.08994 * 109.52874 * 181.33648 * 14 13 12 41 41 H 1.08997 * 109.58334 * 185.58027 * 15 14 13 42 42 H 1.09000 * 109.58485 * 65.15283 * 15 14 13 43 43 H 1.08995 * 109.47526 * 299.99733 * 19 17 16 44 44 H 1.09000 * 109.46871 * 60.00310 * 19 17 16 45 45 H 0.97002 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3573 6 8 1.8587 1.1594 -2.4116 7 6 2.6391 -0.7242 -3.5790 8 7 2.7625 -0.0531 -4.7413 9 8 2.9277 -1.9016 -3.5246 10 6 2.0400 -0.7213 1.2491 11 1 1.6408 -0.2362 2.1398 12 6 1.5934 -2.1863 1.2147 13 6 2.2215 -2.9347 2.3925 14 6 3.7465 -2.8919 2.2716 15 6 4.2176 -1.4349 2.3180 16 7 3.5083 -0.6752 1.2795 17 6 4.1915 0.0498 0.3717 18 8 3.5951 0.7574 -0.4123 19 6 5.6964 -0.0186 0.3309 20 16 6.3138 1.0582 -0.9864 21 6 8.0468 0.7911 -0.8130 22 1 8.4161 0.1194 -0.0520 23 6 8.9372 1.4445 -1.6535 24 7 10.2319 1.2453 -1.5236 25 14 8.2985 2.6067 -2.9691 26 1 8.2023 3.9799 -2.4122 27 1 9.2302 2.6056 -4.1254 28 1 6.9550 2.1584 -3.4156 29 1 -0.3634 -1.0237 -0.0904 30 1 -0.3633 0.4335 0.9318 31 1 -0.3634 0.5901 -0.8413 32 1 2.2489 -1.6318 -1.1527 33 1 2.5321 0.8881 -4.7847 34 1 3.0823 -0.5112 -5.5342 35 1 0.5071 -2.2372 1.2889 36 1 1.9165 -2.6432 0.2793 37 1 1.8856 -3.9717 2.3845 38 1 1.9178 -2.4621 3.3266 39 1 4.0493 -3.3421 1.3262 40 1 4.1932 -3.4452 3.0976 41 1 5.2910 -1.3919 2.1333 42 1 3.9959 -1.0102 3.2971 43 1 6.1011 0.3093 1.2883 44 1 6.0082 -1.0449 0.1369 45 1 10.8542 1.7017 -2.1112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523805164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:16 Heat of formation + Delta-G solvation = -81.216700 kcal Electronic energy + Delta-G solvation = -29909.069982 eV Core-core repulsion = 25860.935195 eV Total energy + Delta-G solvation = -4048.134787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07090 -39.82470 -37.97306 -37.36078 -35.62445 -33.54704 -32.95017 -32.43478 -31.76315 -29.60425 -29.15525 -25.68045 -25.30425 -24.98543 -23.94615 -21.40866 -21.20197 -19.96700 -19.12505 -18.45077 -17.64166 -17.13219 -16.55151 -16.02371 -15.88700 -15.62135 -15.30657 -15.01890 -14.96947 -14.50254 -14.34881 -14.01474 -13.84579 -13.73811 -13.48159 -13.28754 -13.23925 -12.80772 -12.73305 -12.43430 -12.21276 -11.97172 -11.54051 -11.41764 -11.35814 -11.25038 -11.11398 -11.01761 -10.88557 -10.74459 -10.57286 -9.85565 -9.74447 -9.36712 -9.02925 -8.99895 -8.77913 -8.47837 -8.43971 -6.90217 -6.28957 -3.99806 1.76659 2.66371 2.76990 2.92197 3.15232 3.32500 3.49187 3.57653 3.62590 4.08926 4.30096 4.33531 4.52792 4.57959 4.71276 4.82250 4.84160 4.89420 5.03383 5.10322 5.17065 5.20257 5.35857 5.37590 5.45787 5.52651 5.60569 5.64390 5.71098 5.74694 5.81116 5.83299 5.99156 6.06101 6.09613 6.21106 6.55147 6.62361 6.68600 7.08306 7.45499 7.56824 7.94128 8.05322 8.33808 8.41469 8.49898 9.17520 10.80438 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.004883 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.970556 B = 5732.446642 C = 7410.951316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.136 0.864 4 N -0.684 5.684 5 C 0.525 3.475 6 O -0.508 6.508 7 C 0.516 3.484 8 N -0.823 5.823 9 O -0.531 6.531 10 C 0.143 3.857 11 H 0.085 0.915 12 C -0.136 4.136 13 C -0.117 4.117 14 C -0.138 4.138 15 C 0.108 3.892 16 N -0.617 5.617 17 C 0.531 3.469 18 O -0.497 6.497 19 C -0.122 4.122 20 S -0.139 6.139 21 C -0.521 4.521 22 H 0.087 0.913 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.413 0.587 34 H 0.407 0.593 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -7.776 5.834 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.034 3.966 3 H 0.153 0.847 4 N -0.338 5.338 5 C 0.305 3.695 6 O -0.383 6.383 7 C 0.295 3.705 8 N -0.388 5.388 9 O -0.408 6.408 10 C 0.039 3.961 11 H 0.103 0.897 12 C -0.175 4.175 13 C -0.154 4.154 14 C -0.176 4.176 15 C -0.015 4.015 16 N -0.353 5.353 17 C 0.319 3.681 18 O -0.371 6.371 19 C -0.273 4.273 20 S 0.088 5.912 21 C -0.668 4.668 22 H 0.105 0.895 23 C -0.112 4.112 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.161 1.161 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.243 0.757 34 H 0.239 0.761 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.899 -6.564 4.795 22.424 hybrid contribution 1.141 -0.664 0.103 1.325 sum -19.758 -7.228 4.898 21.601 Atomic orbital electron populations 1.22322 0.95804 1.01933 1.02587 1.21516 0.92151 1.01140 0.81811 0.84680 1.45624 1.65753 1.13667 1.08742 1.19571 0.78862 0.86760 0.84283 1.90701 1.48069 1.14755 1.84740 1.20343 0.78074 0.86753 0.85292 1.43482 1.68148 1.15960 1.11244 1.90762 1.48920 1.15857 1.85219 1.21528 0.80239 0.95897 0.98432 0.89673 1.22059 1.00943 0.95014 0.99436 1.21487 0.95289 1.00469 0.98191 1.21945 0.96140 0.96481 1.03034 1.21751 0.97758 0.91064 0.90951 1.48080 1.05557 1.49856 1.31845 1.20296 0.89323 0.78909 0.79576 1.90699 1.68433 1.38401 1.39586 1.23337 0.93773 1.05201 1.04984 1.84775 1.06288 1.58458 1.41687 1.22321 0.88487 1.32912 1.23104 0.89508 1.24696 0.94085 0.95771 0.96678 1.69940 1.01176 1.42157 1.38481 0.86730 0.81058 0.82116 0.81887 1.19239 1.20016 1.16064 0.92676 0.91654 0.91765 0.76325 0.75669 0.76087 0.90300 0.91409 0.91611 0.91715 0.91181 0.90652 0.89130 0.91358 0.88862 0.88829 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.07 37.16 0.34 -1.30 16 2 C 0.14 1.71 1.57 -67.93 -0.11 1.61 16 3 H 0.14 2.19 5.40 -52.26 -0.28 1.91 16 4 N -0.68 -9.64 3.47 -54.24 -0.19 -9.83 16 5 C 0.53 8.68 6.36 -11.58 -0.07 8.61 16 6 O -0.51 -9.39 15.57 -12.35 -0.19 -9.58 16 7 C 0.52 8.28 8.16 -11.59 -0.09 8.18 16 8 N -0.82 -10.35 8.87 30.90 0.27 -10.08 16 9 O -0.53 -9.52 17.31 5.50 0.10 -9.42 16 10 C 0.14 1.45 2.74 -67.60 -0.19 1.27 16 11 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 12 C -0.14 -1.09 4.82 -26.62 -0.13 -1.22 16 13 C -0.12 -0.81 5.88 -26.69 -0.16 -0.97 16 14 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 15 C 0.11 1.05 6.35 -3.71 -0.02 1.03 16 16 N -0.62 -7.57 2.96 -165.22 -0.49 -8.06 16 17 C 0.53 8.98 7.13 -10.99 -0.08 8.90 16 18 O -0.50 -9.61 8.65 -12.29 -0.11 -9.72 16 19 C -0.12 -2.36 4.51 36.00 0.16 -2.20 16 20 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 21 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 22 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 23 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.70 13.97 55.49 0.78 -25.93 16 25 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 29 H 0.05 0.46 6.91 -51.93 -0.36 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 5.43 6.10 -40.82 -0.25 5.18 16 33 H 0.41 4.74 8.30 -40.82 -0.34 4.40 16 34 H 0.41 4.18 8.93 -40.82 -0.36 3.82 16 35 H 0.08 0.52 6.94 -51.93 -0.36 0.16 16 36 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.69 7.70 -51.92 -0.40 1.29 16 44 H 0.09 1.75 7.93 -51.92 -0.41 1.33 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -35.66 368.07 -7.64 -43.30 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.35 Total: 11.34 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.30 Total: 10.65 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.37 Total: -53.90 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.20 Total: -28.72 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.66 -7.64 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523805164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.917 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds