Wall clock time and date at job start Wed Apr 1 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47267 * 2 1 4 4 N 1.46504 * 109.46742 * 240.00045 * 2 1 3 5 5 C 1.34784 * 119.99873 * 84.99754 * 4 2 1 6 6 O 1.21355 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.49444 * 119.99972 * 180.27354 * 5 4 2 8 8 N 1.34775 * 119.99865 * 179.72580 * 7 5 4 9 9 O 1.21345 * 119.99994 * 359.72774 * 7 5 4 10 10 C 1.52993 * 109.47400 * 120.00562 * 2 1 3 11 11 H 1.09004 * 109.58551 * 302.55944 * 10 2 1 12 12 C 1.53188 * 109.59281 * 62.99204 * 10 2 1 13 13 C 1.53035 * 109.31599 * 174.42384 * 12 10 2 14 14 C 1.53039 * 109.54051 * 298.63303 * 13 12 10 15 15 C 1.53199 * 109.31036 * 61.36368 * 14 13 12 16 16 N 1.46926 * 108.77481 * 305.36514 * 15 14 13 17 17 C 1.34776 * 120.63048 * 233.62793 * 16 15 14 18 18 O 1.21286 * 119.99529 * 185.94558 * 17 16 15 19 19 C 1.50693 * 120.00051 * 5.94349 * 17 16 15 20 20 S 1.81004 * 109.47163 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00117 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99811 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99938 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99776 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00189 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47125 * 90.00371 * 25 23 21 27 27 H 1.48497 * 109.47321 * 210.00498 * 25 23 21 28 28 H 1.48505 * 109.47199 * 330.00333 * 25 23 21 29 29 H 1.09004 * 109.47210 * 174.95477 * 1 2 3 30 30 H 1.09000 * 109.46770 * 294.95145 * 1 2 3 31 31 H 1.08996 * 109.47528 * 54.95130 * 1 2 3 32 32 H 0.96995 * 120.00241 * 265.00125 * 4 2 1 33 33 H 0.96995 * 120.00047 * 0.02562 * 8 7 5 34 34 H 0.97000 * 119.99924 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.49561 * 294.37805 * 12 10 2 36 36 H 1.08999 * 109.49531 * 54.47013 * 12 10 2 37 37 H 1.09002 * 109.46077 * 178.61060 * 13 12 10 38 38 H 1.09002 * 109.45851 * 58.65650 * 13 12 10 39 39 H 1.08998 * 109.49795 * 301.41745 * 14 13 12 40 40 H 1.08994 * 109.52874 * 181.33648 * 14 13 12 41 41 H 1.08997 * 109.58334 * 185.58027 * 15 14 13 42 42 H 1.09000 * 109.58485 * 65.15283 * 15 14 13 43 43 H 1.08995 * 109.47526 * 299.99733 * 19 17 16 44 44 H 1.09000 * 109.46871 * 60.00310 * 19 17 16 45 45 H 0.97002 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3573 6 8 1.8587 1.1594 -2.4116 7 6 2.6391 -0.7242 -3.5790 8 7 2.7625 -0.0531 -4.7413 9 8 2.9277 -1.9016 -3.5246 10 6 2.0400 -0.7213 1.2491 11 1 1.6408 -0.2362 2.1398 12 6 1.5934 -2.1863 1.2147 13 6 2.2215 -2.9347 2.3925 14 6 3.7465 -2.8919 2.2716 15 6 4.2176 -1.4349 2.3180 16 7 3.5083 -0.6752 1.2795 17 6 4.1915 0.0498 0.3717 18 8 3.5951 0.7574 -0.4123 19 6 5.6964 -0.0186 0.3309 20 16 6.3138 1.0582 -0.9864 21 6 8.0468 0.7911 -0.8130 22 1 8.4161 0.1194 -0.0520 23 6 8.9372 1.4445 -1.6535 24 7 10.2319 1.2453 -1.5236 25 14 8.2985 2.6067 -2.9691 26 1 8.2023 3.9799 -2.4122 27 1 9.2302 2.6056 -4.1254 28 1 6.9550 2.1584 -3.4156 29 1 -0.3634 -1.0237 -0.0904 30 1 -0.3633 0.4335 0.9318 31 1 -0.3634 0.5901 -0.8413 32 1 2.2489 -1.6318 -1.1527 33 1 2.5321 0.8881 -4.7847 34 1 3.0823 -0.5112 -5.5342 35 1 0.5071 -2.2372 1.2889 36 1 1.9165 -2.6432 0.2793 37 1 1.8856 -3.9717 2.3845 38 1 1.9178 -2.4621 3.3266 39 1 4.0493 -3.3421 1.3262 40 1 4.1932 -3.4452 3.0976 41 1 5.2910 -1.3919 2.1333 42 1 3.9959 -1.0102 3.2971 43 1 6.1011 0.3093 1.2883 44 1 6.0082 -1.0449 0.1369 45 1 10.8542 1.7017 -2.1112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523805164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:15 Heat of formation + Delta-G solvation = -108.727811 kcal Electronic energy + Delta-G solvation = -29910.262953 eV Core-core repulsion = 25860.935195 eV Total energy + Delta-G solvation = -4049.327758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17349 -41.02892 -39.22437 -38.43174 -36.68390 -34.69950 -34.68588 -33.88417 -32.79031 -30.80608 -30.17477 -27.89268 -26.41919 -25.93800 -24.81297 -22.42113 -22.08398 -21.14667 -20.31507 -19.73341 -19.35392 -18.38192 -17.72328 -17.22652 -17.09986 -16.99026 -16.84504 -16.44940 -16.13845 -15.79880 -15.31261 -15.08789 -15.01387 -14.95283 -14.77267 -14.69644 -14.41754 -14.17244 -13.62748 -13.48372 -13.36611 -13.28893 -13.04180 -13.00697 -12.68815 -12.63602 -12.28837 -12.11065 -11.90135 -11.84927 -11.58171 -11.46036 -11.19825 -10.89416 -10.63854 -10.51774 -10.18271 -9.95802 -9.47827 -8.99258 -8.54092 -6.23423 0.51023 0.96676 1.27651 1.42429 1.50995 1.58449 1.64592 2.08198 2.21802 2.37893 2.67858 2.84304 3.01798 3.39333 3.68588 3.79334 3.84904 3.96186 4.12424 4.17262 4.19192 4.30296 4.38879 4.40228 4.55458 4.62652 4.73726 4.82790 4.92066 4.98899 5.07834 5.17213 5.20159 5.27661 5.30577 5.48907 5.49323 5.58741 5.68042 5.71665 5.96342 6.08356 6.31327 6.42158 6.91386 6.93703 7.13469 7.24652 8.58689 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.004883 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.970556 B = 5732.446642 C = 7410.951316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.098 0.902 4 N -0.673 5.673 5 C 0.517 3.483 6 O -0.536 6.536 7 C 0.509 3.491 8 N -0.805 5.805 9 O -0.557 6.557 10 C 0.143 3.857 11 H 0.112 0.888 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.100 3.900 16 N -0.604 5.604 17 C 0.529 3.471 18 O -0.525 6.525 19 C -0.108 4.108 20 S -0.167 6.167 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.239 1.239 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.403 0.597 33 H 0.420 0.580 34 H 0.419 0.581 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 -8.651 7.196 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.115 0.885 4 N -0.326 5.326 5 C 0.297 3.703 6 O -0.413 6.413 7 C 0.288 3.712 8 N -0.371 5.371 9 O -0.436 6.436 10 C 0.041 3.959 11 H 0.129 0.871 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.172 4.172 15 C -0.022 4.022 16 N -0.339 5.339 17 C 0.316 3.684 18 O -0.402 6.402 19 C -0.259 4.259 20 S 0.060 5.940 21 C -0.677 4.677 22 H 0.077 0.923 23 C -0.158 4.158 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.188 1.188 27 H -0.183 1.183 28 H -0.163 1.163 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.240 0.760 33 H 0.251 0.749 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.234 -7.470 6.186 25.177 hybrid contribution 1.828 -0.477 -0.178 1.897 sum -21.406 -7.946 6.008 23.610 Atomic orbital electron populations 1.22224 0.93383 1.02969 1.03021 1.21529 0.93955 0.99276 0.82135 0.88460 1.45684 1.64580 1.13662 1.08644 1.19766 0.78856 0.86600 0.85083 1.90677 1.49684 1.15738 1.85233 1.20450 0.78174 0.86602 0.86010 1.43401 1.66674 1.16219 1.10811 1.90741 1.50451 1.16690 1.85675 1.21778 0.78383 0.97666 0.98121 0.87050 1.22060 1.02471 0.92945 0.99427 1.21485 0.93867 1.01299 0.98248 1.21931 0.97452 0.94908 1.02927 1.22018 0.96924 0.92237 0.91019 1.48055 1.06714 1.48387 1.30745 1.19891 0.88123 0.79791 0.80624 1.90743 1.68422 1.39939 1.41106 1.23315 0.96186 1.03631 1.02789 1.84644 1.03687 1.60590 1.45103 1.22481 0.90852 1.32125 1.22254 0.92338 1.25531 0.94296 0.97269 0.98698 1.70019 1.02317 1.43435 1.39774 0.85864 0.80563 0.80071 0.79810 1.18754 1.18292 1.16325 0.90764 0.89236 0.93826 0.76016 0.74880 0.74687 0.87863 0.92892 0.90271 0.89923 0.92967 0.88728 0.90488 0.88858 0.87866 0.88516 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.07 71.98 0.65 -2.07 16 2 C 0.13 3.18 1.57 44.99 0.07 3.25 16 3 H 0.10 3.16 5.40 -7.67 -0.04 3.12 16 4 N -0.67 -18.73 3.47 -443.87 -1.54 -20.27 16 5 C 0.52 17.29 6.36 87.27 0.55 17.85 16 6 O -0.54 -20.26 15.57 13.79 0.21 -20.05 16 7 C 0.51 16.43 8.16 87.27 0.71 17.15 16 8 N -0.81 -20.09 8.87 -174.51 -1.55 -21.63 16 9 O -0.56 -20.07 17.31 -3.23 -0.06 -20.12 16 10 C 0.14 2.50 2.74 44.97 0.12 2.63 16 11 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 12 C -0.13 -1.62 4.82 30.67 0.15 -1.47 16 13 C -0.11 -1.06 5.88 30.62 0.18 -0.88 16 14 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 15 C 0.10 1.70 6.35 86.36 0.55 2.25 16 16 N -0.60 -13.75 2.96 -795.02 -2.36 -16.11 16 17 C 0.53 17.70 7.13 87.66 0.63 18.33 16 18 O -0.53 -20.48 8.65 14.01 0.12 -20.36 16 19 C -0.11 -4.20 4.51 71.23 0.32 -3.88 16 20 S -0.17 -8.54 18.55 -56.49 -1.05 -9.58 16 21 C -0.53 -31.37 10.04 67.95 0.68 -30.69 16 22 H 0.06 3.67 8.03 -2.91 -0.02 3.65 16 23 C 0.05 2.82 5.50 84.86 0.47 3.29 16 24 N -0.92 -56.58 13.97 21.65 0.30 -56.27 16 25 Si 0.91 45.84 27.74 68.60 1.90 47.74 16 26 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 29 H 0.07 1.01 6.91 -2.39 -0.02 0.99 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.40 10.71 6.10 -92.71 -0.57 10.14 16 33 H 0.42 9.56 8.30 -92.71 -0.77 8.79 16 34 H 0.42 8.36 8.93 -92.71 -0.83 7.53 16 35 H 0.10 0.85 6.94 -2.39 -0.02 0.83 16 36 H 0.05 0.85 6.20 -2.39 -0.01 0.83 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.53 5.93 -2.39 -0.01 1.52 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 3.76 7.70 -2.40 -0.02 3.74 16 44 H 0.10 3.66 7.93 -2.40 -0.02 3.65 16 45 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -80.12 368.07 0.10 -80.02 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.17 Total: 32.46 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.27 Total: 24.18 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.14 Total: -114.28 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: 0.28 Total: -60.54 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.58 kcal Total: -80.12 0.10 -80.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523805164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.708 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds