Wall clock time and date at job start Wed Apr 1 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.34770 * 119.99715 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.50709 * 120.00078 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.47304 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00032 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00047 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00324 * 180.02562 * 10 9 8 13 13 C 1.52998 * 117.49873 * 248.62710 * 12 10 9 14 14 C 1.53004 * 117.50094 * 180.02562 * 12 10 9 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46852 * 300.00347 * 8 6 5 35 35 H 1.09000 * 109.47082 * 59.99758 * 8 6 5 36 36 H 0.97004 * 119.99995 * 0.02562 * 9 8 6 37 37 H 1.09000 * 115.54677 * 34.33513 * 12 10 9 38 38 H 1.09001 * 117.50009 * 359.97438 * 13 12 10 39 39 H 1.09004 * 117.49875 * 145.02236 * 13 12 10 40 40 H 1.08992 * 117.50026 * 214.97873 * 14 12 10 41 41 H 1.09001 * 117.49807 * 359.97438 * 14 12 10 42 42 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 44 44 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 45 45 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4281 2.1914 7 8 3.5698 -1.8830 3.1403 8 6 5.6750 -1.5358 2.1314 9 7 6.1633 -2.2253 3.3282 10 6 7.4842 -2.4371 3.4921 11 8 8.2686 -2.0566 2.6490 12 6 7.9865 -3.1469 4.7229 13 6 8.7904 -2.3259 5.7332 14 6 9.4968 -3.3564 4.8507 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 3.0483 -1.8974 -9.5601 26 1 4.9895 -0.4687 -9.8263 27 1 5.0467 -2.3109 -8.2503 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9825 -0.4622 0.4321 34 1 5.9637 -2.0989 1.2440 35 1 6.1093 -0.5371 2.0852 36 1 5.5359 -2.5300 4.0024 37 1 7.3350 -3.9285 5.1137 38 1 8.9562 -1.2725 5.5074 39 1 8.6677 -2.5672 6.7891 40 1 9.8389 -4.2758 5.3257 41 1 10.1269 -2.9812 4.0443 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526407557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:37 Heat of formation + Delta-G solvation = -91.405807 kcal Electronic energy + Delta-G solvation = -26270.931469 eV Core-core repulsion = 22222.354850 eV Total energy + Delta-G solvation = -4048.576619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73738 -39.97328 -39.31511 -36.76276 -36.44769 -34.79994 -34.03731 -32.46522 -31.63405 -29.27385 -28.62211 -26.35863 -25.52086 -24.10365 -22.86846 -21.93714 -20.98461 -20.58078 -20.45941 -18.42001 -17.92652 -17.23096 -16.82635 -16.75432 -16.32501 -16.07288 -15.63399 -15.48257 -15.01390 -14.83796 -14.74426 -14.60315 -14.20473 -13.71890 -13.49512 -13.31533 -13.14961 -13.00790 -12.95939 -12.64811 -12.60813 -12.14268 -12.00418 -11.92911 -11.26649 -11.09851 -11.09383 -11.06025 -10.99451 -10.79155 -10.46324 -10.31099 -9.85951 -9.68672 -9.56188 -9.46319 -9.13864 -9.07737 -8.29414 -6.54985 -6.25501 -3.96594 2.04659 2.11782 2.30229 2.88606 2.94426 3.02249 3.20109 3.25310 3.28963 3.40664 3.61210 4.13888 4.16759 4.25578 4.30969 4.36620 4.42658 4.67231 4.78413 4.88306 4.94584 5.00284 5.06502 5.10021 5.14393 5.24268 5.31198 5.33645 5.47017 5.48346 5.58256 5.67848 5.80346 5.83858 5.85266 5.86566 6.06588 6.08626 6.47375 6.94521 7.06161 7.54039 7.56477 7.64023 7.79916 8.31355 8.47508 9.20115 10.81841 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.002029 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.147376 B =13794.844676 C =16112.934426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.722 5.722 6 C 0.512 3.488 7 O -0.540 6.540 8 C 0.098 3.902 9 N -0.715 5.715 10 C 0.545 3.455 11 O -0.538 6.538 12 C -0.195 4.195 13 C -0.152 4.152 14 C -0.147 4.147 15 N -0.739 5.739 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.410 0.590 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -8.795 27.227 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.374 5.374 6 C 0.297 3.703 7 O -0.418 6.418 8 C -0.030 4.030 9 N -0.370 5.370 10 C 0.331 3.669 11 O -0.415 6.415 12 C -0.216 4.216 13 C -0.190 4.190 14 C -0.184 4.184 15 N -0.394 5.394 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.251 0.749 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.198 -6.706 27.056 28.058 hybrid contribution 0.549 -2.541 -0.944 2.765 sum 3.747 -9.247 26.112 27.953 Atomic orbital electron populations 1.22117 0.94036 1.02590 1.03299 1.21147 0.95140 0.97928 0.83199 0.88554 1.21767 0.79286 1.01818 0.98197 1.45903 1.08160 1.59543 1.23839 1.20483 0.89661 0.77670 0.82443 1.90707 1.69909 1.47942 1.33195 1.21082 0.90906 1.00446 0.90542 1.45605 1.07930 1.60064 1.23423 1.19685 0.81551 0.78711 0.86931 1.90737 1.55454 1.51250 1.44029 1.22151 0.97135 1.04451 0.97908 1.22958 1.01740 0.98004 0.96253 1.22976 0.91839 1.01018 1.02580 1.46166 1.69704 1.14052 1.09495 1.20353 0.76770 0.87217 0.83675 1.90716 1.48028 1.15704 1.84216 1.23546 1.03645 1.04974 0.98390 1.85396 1.86110 1.12714 0.99007 1.22858 1.50918 0.98164 0.96533 0.90922 1.24993 0.95071 0.95539 0.97960 1.70013 1.45450 1.13173 1.21596 0.86167 0.78848 0.79954 0.80534 1.20270 1.20722 1.19680 0.90948 0.92166 0.91480 0.89724 0.90514 0.75475 0.87915 0.88034 0.74932 0.85629 0.88146 0.87628 0.87766 0.87254 0.76718 0.89189 0.89200 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.13 1.22 2.73 -67.93 -0.19 1.04 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 4 C 0.11 0.85 5.23 -4.04 -0.02 0.83 16 5 N -0.72 -5.39 5.39 -60.29 -0.32 -5.71 16 6 C 0.51 4.40 7.90 -10.98 -0.09 4.31 16 7 O -0.54 -6.07 15.67 5.55 0.09 -5.98 16 8 C 0.10 0.77 6.15 -5.19 -0.03 0.74 16 9 N -0.72 -5.87 5.53 -61.47 -0.34 -6.21 16 10 C 0.54 5.21 7.61 -10.99 -0.08 5.12 16 11 O -0.54 -7.12 16.26 5.55 0.09 -7.03 16 12 C -0.20 -1.29 6.19 -91.77 -0.57 -1.86 16 13 C -0.15 -0.84 10.23 -26.75 -0.27 -1.11 16 14 C -0.15 -0.91 10.04 -26.75 -0.27 -1.18 16 15 N -0.74 -8.05 4.52 -53.80 -0.24 -8.29 16 16 C 0.53 8.80 7.81 -10.98 -0.09 8.71 16 17 O -0.51 -10.55 15.52 5.55 0.09 -10.47 16 18 C -0.15 -2.90 6.16 36.01 0.22 -2.67 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 24 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 2.85 8.14 -40.82 -0.33 2.51 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.41 3.04 7.44 -40.82 -0.30 2.74 16 37 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.86 7.67 -51.93 -0.40 0.46 16 42 H 0.40 3.43 8.60 -40.82 -0.35 3.08 16 43 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 44 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -36.70 403.48 -8.72 -45.42 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.82 Total: 4.71 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.83 Total: 0.13 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.17 Total: -45.24 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.26 Total: -23.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.70 -8.72 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526407557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.989 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds