Wall clock time and date at job start Wed Apr 1 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00472 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99665 * 179.72653 * 4 2 1 6 6 C 1.50703 * 109.47138 * 180.28062 * 5 4 2 7 7 O 1.21283 * 120.00006 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00178 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47562 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.87950 * 54.29709 * 10 9 8 12 12 C 1.55154 * 111.00781 * 178.17978 * 10 9 8 13 13 C 1.54318 * 102.94203 * 153.57856 * 12 10 9 14 14 N 1.47023 * 107.27444 * 337.80677 * 13 12 10 15 15 C 1.34772 * 125.65181 * 178.99743 * 14 13 12 16 16 O 1.21282 * 120.00202 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99830 * 359.97288 * 15 14 13 18 18 S 1.81004 * 109.47088 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99829 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00234 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99986 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99989 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46548 * 90.00242 * 23 21 19 25 25 H 1.48498 * 109.47269 * 210.00058 * 23 21 19 26 26 H 1.48494 * 109.47492 * 330.00451 * 23 21 19 27 27 C 1.47470 * 108.71793 * 358.97682 * 14 13 12 28 28 H 1.08993 * 109.47916 * 240.00349 * 1 2 3 29 29 H 1.09008 * 109.47115 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 119.99727 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 32 32 H 1.09009 * 109.47454 * 300.27637 * 5 4 2 33 33 H 1.08998 * 109.47492 * 60.27932 * 5 4 2 34 34 H 0.97002 * 120.00050 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47293 * 299.99810 * 9 8 6 36 36 H 1.09006 * 109.47119 * 59.99855 * 9 8 6 37 37 H 1.09003 * 110.71725 * 271.94018 * 12 10 9 38 38 H 1.08998 * 110.71753 * 35.21099 * 12 10 9 39 39 H 1.09001 * 109.87947 * 97.22650 * 13 12 10 40 40 H 1.09001 * 109.87875 * 218.23169 * 13 12 10 41 41 H 1.08998 * 109.47474 * 300.00493 * 17 15 14 42 42 H 1.09003 * 109.47329 * 60.00338 * 17 15 14 43 43 H 0.97003 * 120.00415 * 180.02562 * 22 21 19 44 44 H 1.09005 * 110.34541 * 265.25055 * 27 14 13 45 45 H 1.09004 * 110.40296 * 142.91889 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 -0.0055 6 6 4.1480 -2.5882 -0.0105 7 8 3.3599 -3.5100 -0.0087 8 7 5.4731 -2.8345 -0.0160 9 6 5.9614 -4.2157 -0.0203 10 6 7.4914 -4.2158 -0.0268 11 1 7.8834 -3.6228 0.7996 12 6 8.0476 -5.6636 0.0146 13 6 9.4261 -5.5238 -0.6650 14 7 9.3824 -4.3114 -1.4955 15 6 10.3997 -3.8301 -2.2371 16 8 10.2502 -2.8169 -2.8867 17 6 11.7229 -4.5509 -2.2589 18 16 12.8748 -3.6650 -3.3381 19 6 14.2949 -4.6962 -3.1820 20 1 14.2589 -5.5733 -2.5530 21 6 15.4604 -4.3806 -3.8667 22 7 15.5045 -3.3113 -4.6329 23 14 16.9662 -5.4735 -3.7006 24 1 16.9313 -6.5265 -4.7472 25 1 18.1934 -4.6535 -3.8642 26 1 16.9709 -6.1093 -2.3587 27 6 8.0410 -3.7091 -1.3835 28 1 -0.3635 -0.5137 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6958 -2.0073 0.0005 32 1 4.0055 -0.6517 -0.8960 33 1 4.0128 -0.6553 0.8840 34 1 6.1035 -2.0972 -0.0171 35 1 5.6015 -4.7311 0.8701 36 1 5.5946 -4.7280 -0.9099 37 1 8.1580 -6.0051 1.0438 38 1 7.4058 -6.3396 -0.5505 39 1 10.2044 -5.4268 0.0919 40 1 9.6222 -6.3961 -1.2884 41 1 12.1304 -4.5933 -1.2488 42 1 11.5789 -5.5637 -2.6353 43 1 16.3189 -3.0909 -5.1117 44 1 7.4041 -4.0473 -2.2010 45 1 8.1117 -2.6213 -1.3818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527086135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:57 Heat of formation + Delta-G solvation = -144.285213 kcal Electronic energy + Delta-G solvation = -26217.317946 eV Core-core repulsion = 22166.448303 eV Total energy + Delta-G solvation = -4050.869643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39072 -40.98013 -40.14489 -38.71534 -36.10178 -35.47514 -34.59728 -33.28807 -31.48055 -30.88208 -30.21084 -28.29228 -27.67656 -26.17153 -23.96398 -21.91907 -21.66029 -21.41336 -20.70300 -19.58900 -18.76203 -18.04079 -17.91919 -17.41497 -17.10615 -17.02720 -16.89160 -16.61053 -16.27857 -16.09631 -15.73548 -15.50306 -14.92109 -14.75983 -14.55217 -14.34370 -14.15800 -14.01033 -13.83277 -13.48392 -13.44895 -13.33157 -13.16900 -13.00839 -12.91574 -12.89576 -12.62576 -12.38930 -12.06605 -11.73190 -11.67140 -11.16477 -11.15124 -11.07821 -10.99886 -10.33082 -10.29771 -10.13964 -9.71597 -8.69473 -8.35622 -6.14603 1.23357 1.42276 1.42346 1.44805 1.53947 1.55778 1.59200 1.76872 2.08039 2.26486 2.46065 2.98716 3.21032 3.40925 3.49892 3.61901 3.74560 3.90107 3.93741 4.19568 4.23794 4.27382 4.32154 4.34914 4.38539 4.43916 4.55253 4.57831 4.67228 4.73493 4.76735 4.82802 4.96538 5.05240 5.07145 5.24220 5.26857 5.33016 5.39050 5.40588 6.18617 6.34624 6.36457 6.46372 7.02817 7.05522 7.09159 7.16367 8.73656 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.001604 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.236049 B =17456.968537 C =18426.568718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.716 5.716 5 C 0.095 3.905 6 C 0.516 3.484 7 O -0.569 6.569 8 N -0.717 5.717 9 C 0.137 3.863 10 C -0.098 4.098 11 H 0.107 0.893 12 C -0.109 4.109 13 C 0.088 3.912 14 N -0.618 5.618 15 C 0.545 3.455 16 O -0.568 6.568 17 C -0.120 4.120 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.104 3.896 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 -4.926 16.167 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.372 5.372 5 C -0.032 4.032 6 C 0.302 3.698 7 O -0.448 6.448 8 N -0.369 5.369 9 C 0.014 3.986 10 C -0.118 4.118 11 H 0.125 0.875 12 C -0.147 4.147 13 C -0.034 4.034 14 N -0.353 5.353 15 C 0.333 3.667 16 O -0.447 6.447 17 C -0.271 4.271 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.181 1.181 27 C -0.019 4.019 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.257 0.743 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.172 -3.256 15.065 32.113 hybrid contribution 1.527 -1.316 0.224 2.028 sum -26.645 -4.572 15.289 31.059 Atomic orbital electron populations 1.21932 0.87886 1.06236 1.06501 1.21587 0.92391 0.82286 0.74074 1.90730 1.72106 1.33049 1.51945 1.45820 1.06058 1.10127 1.75152 1.21121 0.82717 0.93710 1.05677 1.20544 0.82870 0.90945 0.75406 1.90698 1.55939 1.46779 1.51408 1.45898 1.06592 1.10193 1.74182 1.21320 0.91596 0.82327 1.03375 1.22544 0.94001 0.98766 0.96457 0.87494 1.22648 0.93521 0.95210 1.03338 1.22388 1.00385 0.86401 0.94236 1.48442 1.11893 1.28226 1.46698 1.19769 0.84728 0.83966 0.78239 1.90691 1.83118 1.26685 1.44179 1.23304 0.95357 1.03344 1.05089 1.85596 1.08301 1.38198 1.60468 1.23191 0.98443 1.13483 1.34311 0.89874 1.26134 1.02104 0.97052 0.93766 1.70184 1.29427 1.26496 1.28664 0.84944 0.75996 0.77615 0.79367 1.19309 1.20304 1.18076 1.22461 0.82325 0.98802 0.98291 0.86997 0.89006 0.87231 0.74259 0.87995 0.87339 0.74786 0.89417 0.91277 0.86653 0.88858 0.90182 0.90484 0.87471 0.87664 0.91970 0.91485 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.32 71.24 0.74 -0.32 16 2 C 0.51 7.72 7.94 87.66 0.70 8.42 16 3 O -0.60 -14.83 17.09 -3.04 -0.05 -14.88 16 4 N -0.72 -9.03 5.53 -466.78 -2.58 -11.61 16 5 C 0.10 1.15 6.15 85.63 0.53 1.68 16 6 C 0.52 6.85 7.90 87.66 0.69 7.54 16 7 O -0.57 -10.87 15.67 -3.04 -0.05 -10.92 16 8 N -0.72 -6.92 5.45 -463.05 -2.52 -9.44 16 9 C 0.14 1.26 5.12 86.38 0.44 1.70 16 10 C -0.10 -0.94 3.07 -9.40 -0.03 -0.97 16 11 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 12 C -0.11 -0.87 6.42 31.78 0.20 -0.66 16 13 C 0.09 1.38 6.49 86.73 0.56 1.94 16 14 N -0.62 -15.56 3.33 -811.69 -2.70 -18.26 16 15 C 0.54 20.44 7.87 87.66 0.69 21.13 16 16 O -0.57 -26.72 16.12 -3.04 -0.05 -26.77 16 17 C -0.12 -4.79 5.35 71.24 0.38 -4.40 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.09 9.50 67.95 0.65 -30.45 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 23 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C 0.10 1.96 6.23 86.85 0.54 2.50 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.67 8.12 -2.38 -0.02 0.65 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.28 16 31 H 0.42 4.39 7.44 -92.71 -0.69 3.70 16 32 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 2.75 8.43 -92.71 -0.78 1.97 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.78 8.03 -2.38 -0.02 0.76 16 37 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.61 8.04 -2.39 -0.02 0.59 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.07 1.30 7.96 -2.38 -0.02 1.28 16 45 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -88.85 397.43 -0.70 -89.55 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.45 Total: 13.01 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.55 Total: 9.38 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -7.52 Total: -94.92 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.15 Total: -52.57 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -88.85 -0.70 -89.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527086135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.731 kcal (2) G-P(sol) polarization free energy of solvation -88.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds