Wall clock time and date at job start Wed Apr 1 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47198 * 2 1 4 4 C 1.52995 * 109.46887 * 239.99874 * 2 1 3 5 5 N 1.46503 * 109.46968 * 184.99709 * 4 2 1 6 6 C 1.34777 * 120.00218 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.52996 * 110.88966 * 56.18545 * 8 6 5 10 10 C 1.54480 * 110.97036 * 180.02562 * 8 6 5 11 11 N 1.46766 * 105.47504 * 143.53023 * 10 8 6 12 12 C 1.34417 * 111.29802 * 342.98327 * 11 10 8 13 13 O 1.21283 * 124.93738 * 180.38774 * 12 11 10 14 14 C 1.51280 * 110.11945 * 0.40799 * 12 11 10 15 15 N 1.46500 * 109.47036 * 119.99704 * 2 1 3 16 16 C 1.34770 * 120.00403 * 274.99448 * 15 2 1 17 17 O 1.21283 * 120.00100 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00268 * 180.02562 * 16 15 2 19 19 S 1.81004 * 109.47239 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99990 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00051 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99575 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46792 * 60.00021 * 24 22 20 26 26 H 1.48502 * 109.46803 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47048 * 300.00134 * 24 22 20 28 28 H 1.08993 * 109.47491 * 60.00356 * 1 2 3 29 29 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46821 * 299.99566 * 1 2 3 31 31 H 1.09003 * 109.47057 * 65.00007 * 4 2 1 32 32 H 1.08999 * 109.47568 * 304.99705 * 4 2 1 33 33 H 0.96996 * 120.00255 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47292 * 183.81484 * 9 8 6 35 35 H 1.09007 * 109.46688 * 303.81646 * 9 8 6 36 36 H 1.09005 * 109.46812 * 63.81159 * 9 8 6 37 37 H 1.09000 * 110.24742 * 24.52998 * 10 8 6 38 38 H 1.08996 * 110.24456 * 262.53271 * 10 8 6 39 39 H 0.96997 * 124.34786 * 163.00353 * 11 10 8 40 40 H 1.08997 * 110.48916 * 134.93032 * 14 12 11 41 41 H 1.09006 * 110.48318 * 257.57618 * 14 12 11 42 42 H 0.97004 * 119.99306 * 95.00682 * 15 2 1 43 43 H 1.09001 * 109.47400 * 300.00751 * 18 16 15 44 44 H 1.08999 * 109.46969 * 60.00765 * 18 16 15 45 45 H 0.97003 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1731 -1.4282 -2.1912 7 8 3.5699 -1.8833 -3.1399 8 6 5.6749 -1.5369 -2.1306 9 6 6.1196 -2.2412 -0.8473 10 6 6.2277 -2.2600 -3.3788 11 7 7.4952 -1.5890 -3.6908 12 6 7.5802 -0.3962 -3.0770 13 8 8.5183 0.3670 -3.1690 14 6 6.3358 -0.1444 -2.2545 15 7 2.0183 -0.6906 1.1962 16 6 2.1472 -0.0182 2.3571 17 8 1.8584 1.1585 2.4117 18 6 2.6500 -0.7285 3.5874 19 16 2.7102 0.4344 4.9732 20 6 3.3148 -0.6304 6.2401 21 1 3.5248 -1.6666 6.0200 22 6 3.5204 -0.1376 7.5214 23 7 3.2640 1.1252 7.7897 24 14 4.1607 -1.2667 8.8647 25 1 5.4879 -1.8032 8.4695 26 1 4.2933 -0.5032 10.1315 27 1 3.2108 -2.3911 9.0608 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7515 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 3.9824 -0.4627 -0.4317 34 1 7.2083 -2.2471 -0.7946 35 1 5.7169 -1.7115 0.0161 36 1 5.7503 -3.2668 -0.8491 37 1 5.5324 -2.1590 -4.2121 38 1 6.4026 -3.3129 -3.1581 39 1 8.1829 -1.9588 -4.2662 40 1 6.6008 0.2410 -1.2699 41 1 5.6713 0.5488 -2.7704 42 1 2.2491 -1.6317 1.1526 43 1 1.9779 -1.5508 3.8325 44 1 3.6493 -1.1202 3.3978 45 1 3.4080 1.4697 8.6850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533644717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:12 Heat of formation + Delta-G solvation = -118.082476 kcal Electronic energy + Delta-G solvation = -27513.156271 eV Core-core repulsion = 23463.422865 eV Total energy + Delta-G solvation = -4049.733407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48204 -39.89651 -39.24512 -36.97410 -36.37834 -34.21473 -33.04480 -32.48167 -31.47581 -28.95840 -28.68962 -26.90378 -26.82084 -25.53751 -23.17114 -21.91035 -21.06200 -20.47692 -20.01166 -18.27161 -17.88821 -17.13334 -16.72656 -16.68280 -16.21566 -15.91130 -15.34342 -15.24071 -15.02084 -14.85222 -14.52661 -14.36974 -14.12937 -13.89879 -13.58129 -13.35335 -13.20749 -13.01025 -12.92847 -12.76508 -12.67148 -12.61708 -12.14818 -11.94945 -11.77711 -11.69785 -11.25434 -11.10175 -11.08108 -10.81573 -10.54695 -10.09851 -9.88446 -9.61301 -9.53662 -9.46451 -9.14582 -9.08573 -8.31324 -6.56740 -6.26931 -3.98263 2.08452 2.20044 2.54380 2.90073 2.94013 2.99407 3.19560 3.23589 3.26179 3.59309 3.64091 3.81675 4.12556 4.15235 4.25786 4.32537 4.48117 4.80340 4.97615 4.99018 5.00531 5.05737 5.07232 5.08534 5.19422 5.24825 5.26645 5.34016 5.37947 5.46903 5.57302 5.61643 5.78096 5.83770 5.89630 6.04236 6.09194 6.31313 6.46701 6.54207 6.99783 7.52799 7.54680 7.70086 7.81683 8.29391 8.46543 9.18470 10.80363 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.002500 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.862341 B =11198.098220 C =12809.454267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.722 5.722 6 C 0.534 3.466 7 O -0.534 6.534 8 C -0.097 4.097 9 C -0.141 4.141 10 C 0.119 3.881 11 N -0.730 5.730 12 C 0.524 3.476 13 O -0.530 6.530 14 C -0.146 4.146 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 -9.377 -22.521 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.374 5.374 6 C 0.318 3.682 7 O -0.411 6.411 8 C -0.101 4.101 9 C -0.198 4.198 10 C -0.006 4.006 11 N -0.387 5.387 12 C 0.310 3.690 13 O -0.406 6.406 14 C -0.187 4.187 15 N -0.394 5.394 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.252 0.748 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.097 -7.111 -22.939 24.041 hybrid contribution 1.226 -2.623 0.961 3.051 sum 2.322 -9.733 -21.978 24.149 Atomic orbital electron populations 1.22117 0.94070 1.02577 1.03280 1.21145 0.95122 0.97919 0.83219 0.88590 1.21768 0.79493 1.01797 0.98129 1.45963 1.07966 1.59589 1.23875 1.19946 0.88538 0.77495 0.82180 1.90727 1.69736 1.47590 1.33050 1.21686 0.92680 0.97221 0.98480 1.21880 1.02791 1.00947 0.94170 1.22044 0.85110 0.96786 0.96631 1.46211 1.21018 1.20499 1.50938 1.20688 0.87735 0.81038 0.79563 1.90794 1.36570 1.49297 1.63892 1.22491 0.96344 0.96426 1.03431 1.46160 1.69691 1.14013 1.09513 1.20349 0.76815 0.87237 0.83681 1.90720 1.47913 1.15736 1.84227 1.23541 1.03611 1.04964 0.98401 1.85417 1.86307 1.12698 0.98757 1.22811 1.51198 0.98145 0.96409 0.90989 1.24989 0.95040 0.95534 0.97953 1.70000 1.45313 1.13229 1.21678 0.86231 0.79319 0.80019 0.79981 1.19915 1.20790 1.19937 0.91488 0.92174 0.90987 0.89768 0.90516 0.75701 0.90826 0.90885 0.90927 0.88901 0.89410 0.74787 0.86641 0.87200 0.76756 0.89223 0.89265 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.13 1.16 2.73 -67.93 -0.19 0.97 16 3 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 4 C 0.11 0.79 5.23 -4.04 -0.02 0.77 16 5 N -0.72 -4.91 5.28 -60.29 -0.32 -5.23 16 6 C 0.53 4.16 6.48 -10.99 -0.07 4.09 16 7 O -0.53 -5.79 15.51 5.55 0.09 -5.71 16 8 C -0.10 -0.59 0.85 -154.03 -0.13 -0.72 16 9 C -0.14 -0.72 8.39 37.16 0.31 -0.41 16 10 C 0.12 0.69 6.70 -3.12 -0.02 0.67 16 11 N -0.73 -4.85 6.24 -59.20 -0.37 -5.22 16 12 C 0.52 5.00 8.43 -10.86 -0.09 4.91 16 13 O -0.53 -7.40 18.03 5.55 0.10 -7.30 16 14 C -0.15 -1.03 5.96 -26.74 -0.16 -1.19 16 15 N -0.74 -7.58 4.52 -53.81 -0.24 -7.82 16 16 C 0.53 8.47 7.81 -10.99 -0.09 8.38 16 17 O -0.51 -10.28 15.52 5.55 0.09 -10.20 16 18 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.70 9.50 30.94 0.29 -14.40 16 21 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 24 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 2.59 7.38 -40.82 -0.30 2.29 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.36 7.38 -51.93 -0.38 -0.02 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.63 6.96 -51.93 -0.36 0.27 16 38 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 39 H 0.41 2.12 8.96 -40.82 -0.37 1.75 16 40 H 0.12 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.11 0.75 7.89 -51.93 -0.41 0.34 16 42 H 0.40 3.14 8.60 -40.82 -0.35 2.79 16 43 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 44 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -36.82 392.94 -7.66 -44.48 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.74 Total: 2.38 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.32 Total: 1.39 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.20 Total: -43.03 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.27 Total: -23.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.82 -7.66 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533644717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.602 kcal (2) G-P(sol) polarization free energy of solvation -36.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds