Wall clock time and date at job start Wed Apr 1 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47198 * 2 1 4 4 C 1.52995 * 109.46887 * 239.99874 * 2 1 3 5 5 N 1.46503 * 109.46968 * 184.99709 * 4 2 1 6 6 C 1.34777 * 120.00218 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.52996 * 110.88966 * 56.18545 * 8 6 5 10 10 C 1.54480 * 110.97036 * 180.02562 * 8 6 5 11 11 N 1.46766 * 105.47504 * 143.53023 * 10 8 6 12 12 C 1.34417 * 111.29802 * 342.98327 * 11 10 8 13 13 O 1.21283 * 124.93738 * 180.38774 * 12 11 10 14 14 C 1.51280 * 110.11945 * 0.40799 * 12 11 10 15 15 N 1.46500 * 109.47036 * 119.99704 * 2 1 3 16 16 C 1.34770 * 120.00403 * 274.99448 * 15 2 1 17 17 O 1.21283 * 120.00100 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00268 * 180.02562 * 16 15 2 19 19 S 1.81004 * 109.47239 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99990 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00051 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99575 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46792 * 60.00021 * 24 22 20 26 26 H 1.48502 * 109.46803 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47048 * 300.00134 * 24 22 20 28 28 H 1.08993 * 109.47491 * 60.00356 * 1 2 3 29 29 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46821 * 299.99566 * 1 2 3 31 31 H 1.09003 * 109.47057 * 65.00007 * 4 2 1 32 32 H 1.08999 * 109.47568 * 304.99705 * 4 2 1 33 33 H 0.96996 * 120.00255 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47292 * 183.81484 * 9 8 6 35 35 H 1.09007 * 109.46688 * 303.81646 * 9 8 6 36 36 H 1.09005 * 109.46812 * 63.81159 * 9 8 6 37 37 H 1.09000 * 110.24742 * 24.52998 * 10 8 6 38 38 H 1.08996 * 110.24456 * 262.53271 * 10 8 6 39 39 H 0.96997 * 124.34786 * 163.00353 * 11 10 8 40 40 H 1.08997 * 110.48916 * 134.93032 * 14 12 11 41 41 H 1.09006 * 110.48318 * 257.57618 * 14 12 11 42 42 H 0.97004 * 119.99306 * 95.00682 * 15 2 1 43 43 H 1.09001 * 109.47400 * 300.00751 * 18 16 15 44 44 H 1.08999 * 109.46969 * 60.00765 * 18 16 15 45 45 H 0.97003 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1731 -1.4282 -2.1912 7 8 3.5699 -1.8833 -3.1399 8 6 5.6749 -1.5369 -2.1306 9 6 6.1196 -2.2412 -0.8473 10 6 6.2277 -2.2600 -3.3788 11 7 7.4952 -1.5890 -3.6908 12 6 7.5802 -0.3962 -3.0770 13 8 8.5183 0.3670 -3.1690 14 6 6.3358 -0.1444 -2.2545 15 7 2.0183 -0.6906 1.1962 16 6 2.1472 -0.0182 2.3571 17 8 1.8584 1.1585 2.4117 18 6 2.6500 -0.7285 3.5874 19 16 2.7102 0.4344 4.9732 20 6 3.3148 -0.6304 6.2401 21 1 3.5248 -1.6666 6.0200 22 6 3.5204 -0.1376 7.5214 23 7 3.2640 1.1252 7.7897 24 14 4.1607 -1.2667 8.8647 25 1 5.4879 -1.8032 8.4695 26 1 4.2933 -0.5032 10.1315 27 1 3.2108 -2.3911 9.0608 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7515 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 3.9824 -0.4627 -0.4317 34 1 7.2083 -2.2471 -0.7946 35 1 5.7169 -1.7115 0.0161 36 1 5.7503 -3.2668 -0.8491 37 1 5.5324 -2.1590 -4.2121 38 1 6.4026 -3.3129 -3.1581 39 1 8.1829 -1.9588 -4.2662 40 1 6.6008 0.2410 -1.2699 41 1 5.6713 0.5488 -2.7704 42 1 2.2491 -1.6317 1.1526 43 1 1.9779 -1.5508 3.8325 44 1 3.6493 -1.1202 3.3978 45 1 3.4080 1.4697 8.6850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533644717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:11 Heat of formation + Delta-G solvation = -148.407255 kcal Electronic energy + Delta-G solvation = -27514.471253 eV Core-core repulsion = 23463.422865 eV Total energy + Delta-G solvation = -4051.048388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11026 -40.87529 -40.16115 -37.78366 -37.24141 -34.99240 -34.55510 -33.72208 -32.47813 -29.97758 -29.52591 -27.62777 -27.53203 -27.32405 -23.80938 -22.76488 -21.72262 -21.57170 -20.64196 -19.82247 -18.85643 -17.93408 -17.80364 -17.46424 -16.99005 -16.85135 -16.69210 -16.32938 -16.13532 -16.02160 -15.74555 -15.09486 -14.97316 -14.75549 -14.58175 -14.44653 -14.15632 -14.01176 -13.82882 -13.50709 -13.31072 -13.25002 -13.16831 -13.13074 -12.93341 -12.84601 -12.58682 -12.34171 -12.20940 -12.00599 -11.71109 -11.28813 -11.10433 -10.89900 -10.80797 -10.22751 -10.19866 -10.15123 -10.12200 -8.62202 -8.32195 -6.08978 1.29874 1.42519 1.45114 1.49170 1.50738 1.58497 1.66393 1.96282 2.27344 2.32576 2.40225 3.02274 3.09647 3.24556 3.35684 3.59226 3.63623 3.75167 3.92985 4.03174 4.10257 4.29116 4.38624 4.45405 4.56604 4.57410 4.60445 4.62708 4.73612 4.76224 4.78548 4.82262 4.90969 5.04457 5.23146 5.25038 5.38992 5.44564 5.51818 5.72789 5.92500 6.22106 6.40148 6.53286 7.09156 7.09788 7.15208 7.29449 8.76424 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.002500 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.862341 B =11198.098220 C =12809.454267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.080 0.920 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.539 3.461 7 O -0.563 6.563 8 C -0.088 4.088 9 C -0.139 4.139 10 C 0.119 3.881 11 N -0.717 5.717 12 C 0.517 3.483 13 O -0.582 6.582 14 C -0.144 4.144 15 N -0.709 5.709 16 C 0.539 3.461 17 O -0.560 6.560 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.994 3.006 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.263 1.263 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.420 0.580 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.416 0.584 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -12.329 -23.307 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.324 3.676 7 O -0.442 6.442 8 C -0.091 4.091 9 C -0.197 4.197 10 C -0.005 4.005 11 N -0.372 5.372 12 C 0.304 3.696 13 O -0.463 6.463 14 C -0.184 4.184 15 N -0.364 5.364 16 C 0.325 3.675 17 O -0.437 6.437 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.816 3.184 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.187 1.187 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.261 0.739 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.253 0.747 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.128 -10.141 -23.769 25.867 hybrid contribution 1.144 -1.756 1.039 2.339 sum 2.272 -11.897 -22.730 25.756 Atomic orbital electron populations 1.22084 0.93592 1.03386 1.02705 1.21196 0.95423 0.97260 0.82999 0.90194 1.21686 0.79518 1.02145 0.96888 1.45938 1.07960 1.59094 1.23810 1.20079 0.88950 0.76876 0.81653 1.90725 1.70382 1.48948 1.34100 1.21631 0.91523 0.96668 0.99317 1.21903 1.02797 1.01464 0.93496 1.22147 0.84250 0.97831 0.96251 1.46213 1.21420 1.19611 1.49949 1.21072 0.87685 0.81148 0.79666 1.90764 1.38584 1.51006 1.65907 1.22486 0.95308 0.97206 1.03383 1.45842 1.67802 1.14567 1.08231 1.19976 0.76595 0.86499 0.84447 1.90718 1.50297 1.17747 1.84984 1.23388 1.05719 1.03102 0.96019 1.85596 1.86655 1.17224 1.02905 1.23173 1.50660 0.98547 0.96870 0.89849 1.26085 0.95187 0.97085 1.00758 1.70172 1.46922 1.15476 1.22245 0.85059 0.79148 0.77821 0.76333 1.18578 1.20723 1.18739 0.89543 0.90642 0.94136 0.89128 0.89372 0.75257 0.90905 0.90462 0.89812 0.89568 0.87094 0.73936 0.85984 0.86991 0.74727 0.87520 0.86801 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 2 C 0.14 2.13 2.73 44.99 0.12 2.25 16 3 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 4 C 0.12 1.35 5.23 86.38 0.45 1.80 16 5 N -0.72 -7.81 5.28 -463.06 -2.44 -10.25 16 6 C 0.54 7.03 6.48 87.66 0.57 7.60 16 7 O -0.56 -10.84 15.51 -3.05 -0.05 -10.89 16 8 C -0.09 -0.88 0.85 -51.87 -0.04 -0.92 16 9 C -0.14 -1.03 8.39 71.98 0.60 -0.43 16 10 C 0.12 1.12 6.70 86.83 0.58 1.70 16 11 N -0.72 -8.60 6.24 -459.81 -2.87 -11.47 16 12 C 0.52 9.60 8.43 87.90 0.74 10.35 16 13 O -0.58 -16.60 18.03 -3.04 -0.05 -16.65 16 14 C -0.14 -1.85 5.96 30.59 0.18 -1.67 16 15 N -0.71 -12.86 4.52 -442.55 -2.00 -14.86 16 16 C 0.54 16.53 7.81 87.66 0.68 17.22 16 17 O -0.56 -22.76 15.52 -3.04 -0.05 -22.81 16 18 C -0.13 -4.54 6.16 71.24 0.44 -4.10 16 19 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 20 C -0.54 -29.69 9.50 67.96 0.65 -29.05 16 21 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -54.72 13.22 21.65 0.29 -54.43 16 24 Si 0.99 42.21 29.55 68.60 2.03 44.23 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.41 4.13 7.38 -92.71 -0.68 3.44 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.53 7.38 -2.38 -0.02 0.51 16 36 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.09 1.01 6.96 -2.39 -0.02 0.99 16 38 H 0.11 0.58 7.91 -2.39 -0.02 0.56 16 39 H 0.42 3.81 8.96 -92.71 -0.83 2.98 16 40 H 0.12 1.42 7.91 -2.39 -0.02 1.40 16 41 H 0.11 1.41 7.89 -2.38 -0.02 1.39 16 42 H 0.42 5.00 8.60 -92.71 -0.80 4.20 16 43 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.11 3.39 8.14 -2.40 -0.02 3.37 16 45 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -83.28 392.94 -1.45 -84.74 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -1.27 Total: 17.27 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.13 Total: 4.17 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -7.02 Total: -91.01 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.15 Total: -50.35 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -83.28 -1.45 -84.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533644717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.672 kcal (2) G-P(sol) polarization free energy of solvation -83.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds