Wall clock time and date at job start Wed Apr 1 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 N 1.46494 * 109.47228 * 174.99645 * 4 2 1 6 6 C 1.34775 * 119.99813 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47087 * 180.02562 * 8 6 5 10 10 H 1.09007 * 110.21530 * 304.52054 * 9 8 6 11 11 C 1.54481 * 110.24503 * 182.50408 * 9 8 6 12 12 C 1.54630 * 101.76077 * 266.41035 * 11 9 8 13 13 C 1.51277 * 104.19629 * 335.20388 * 12 11 9 14 14 O 1.21287 * 124.94118 * 196.23236 * 13 12 11 15 15 N 1.34410 * 110.11839 * 16.25198 * 13 12 11 16 16 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 2 1 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99575 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47244 * 90.00194 * 25 23 21 27 27 H 1.48498 * 109.47205 * 209.99923 * 25 23 21 28 28 H 1.48496 * 109.47344 * 330.00405 * 25 23 21 29 29 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 30 30 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 32 32 H 1.08996 * 109.46886 * 295.00216 * 4 2 1 33 33 H 1.09005 * 109.46803 * 54.99338 * 4 2 1 34 34 H 0.96995 * 120.00299 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47021 * 299.99772 * 8 6 5 36 36 H 1.08997 * 109.46902 * 60.00347 * 8 6 5 37 37 H 1.09003 * 110.97088 * 24.52933 * 11 9 8 38 38 H 1.08996 * 110.97203 * 148.29754 * 11 9 8 39 39 H 1.08999 * 110.48553 * 216.51823 * 12 11 9 40 40 H 1.08999 * 110.59762 * 93.94057 * 12 11 9 41 41 H 0.97006 * 124.35216 * 180.38285 * 15 13 12 42 42 H 0.97005 * 120.00266 * 265.00202 * 16 2 1 43 43 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 44 44 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 45 45 H 0.97007 * 119.99682 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4283 2.1911 7 8 3.5700 -1.8832 3.1399 8 6 5.6750 -1.5360 2.1310 9 6 6.1851 -2.2573 3.3802 10 1 5.8351 -1.7482 4.2783 11 6 7.7284 -2.3222 3.3673 12 6 7.9805 -3.6996 2.7115 13 6 6.7210 -4.4853 3.0028 14 8 6.6166 -5.6900 2.9093 15 7 5.7344 -3.6540 3.3798 16 7 2.0183 -0.6906 -1.1961 17 6 2.1469 -0.0183 -2.3572 18 8 1.8589 1.1585 -2.4115 19 6 2.6487 -0.7289 -3.5878 20 16 2.7104 0.4343 -4.9732 21 6 3.3120 -0.6314 -6.2409 22 1 3.5199 -1.6682 -6.0212 23 6 3.5176 -0.1386 -7.5220 24 7 3.9666 -0.9349 -8.4692 25 14 3.1559 1.6541 -7.9025 26 1 4.3753 2.4669 -7.6623 27 1 2.7455 1.7855 -9.3235 28 1 2.0595 2.1351 -7.0240 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.9824 -0.4622 0.4319 35 1 5.9637 -2.0991 1.2434 36 1 6.1093 -0.5373 2.0849 37 1 8.1476 -1.5190 2.7613 38 1 8.1286 -2.2937 4.3808 39 1 8.8459 -4.1846 3.1633 40 1 8.1231 -3.5921 1.6362 41 1 4.8393 -3.9404 3.6203 42 1 2.2490 -1.6318 -1.1526 43 1 1.9758 -1.5507 -3.8326 44 1 3.6478 -1.1215 -3.3986 45 1 4.1107 -0.5904 -9.3645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533997681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:43 Heat of formation + Delta-G solvation = -153.874304 kcal Electronic energy + Delta-G solvation = -26980.128164 eV Core-core repulsion = 22928.842707 eV Total energy + Delta-G solvation = -4051.285457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64197 -40.97046 -40.21974 -37.82080 -37.27004 -34.82378 -34.66053 -32.83463 -32.15752 -31.66360 -30.07146 -27.84590 -27.82607 -25.97569 -22.96361 -22.24610 -21.64975 -21.58753 -21.12016 -19.92109 -18.54880 -18.26060 -17.96133 -17.43767 -17.15308 -16.99276 -16.75176 -16.47905 -16.23403 -15.99463 -15.64791 -15.01447 -14.98844 -14.83989 -14.72129 -14.24733 -14.15286 -13.97955 -13.79752 -13.70169 -13.40074 -13.34057 -13.31097 -13.00411 -12.99281 -12.80757 -12.59210 -12.17491 -12.04687 -11.85990 -11.81604 -11.16285 -10.99907 -10.99356 -10.86991 -10.52371 -10.23620 -10.14500 -10.12174 -8.97952 -8.50912 -6.21366 1.00223 1.32130 1.47380 1.55811 1.56772 1.57110 1.65763 2.10076 2.24496 2.28367 2.46558 2.72117 2.87634 3.42190 3.56062 3.59434 3.77698 3.86808 3.97555 4.06056 4.16606 4.21839 4.28944 4.39193 4.48874 4.50275 4.57323 4.67371 4.71136 4.75539 4.86141 4.97151 4.98604 5.13219 5.20331 5.23704 5.39150 5.45722 5.71139 5.87849 6.10227 6.12421 6.41919 6.49054 6.94400 7.17494 7.20255 7.25561 8.61556 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.002286 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.874424 B =12245.783017 C =13919.804751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.086 0.914 4 C 0.122 3.878 5 N -0.724 5.724 6 C 0.512 3.488 7 O -0.578 6.578 8 C -0.154 4.154 9 C 0.142 3.858 10 H 0.099 0.901 11 C -0.115 4.115 12 C -0.154 4.154 13 C 0.502 3.498 14 O -0.600 6.600 15 N -0.718 5.718 16 N -0.710 5.710 17 C 0.542 3.458 18 O -0.555 6.555 19 C -0.114 4.114 20 S -0.171 6.171 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.260 1.260 27 H -0.263 1.263 28 H -0.235 1.235 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.412 0.588 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.406 0.594 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 2.003 27.401 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.104 0.896 4 C -0.003 4.003 5 N -0.377 5.377 6 C 0.300 3.700 7 O -0.458 6.458 8 C -0.194 4.194 9 C 0.036 3.964 10 H 0.117 0.883 11 C -0.152 4.152 12 C -0.194 4.194 13 C 0.290 3.710 14 O -0.482 6.482 15 N -0.370 5.370 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.433 6.433 19 C -0.265 4.265 20 S 0.056 5.944 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.557 5.557 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.187 1.187 28 H -0.159 1.159 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.244 0.756 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.834 3.037 27.745 28.173 hybrid contribution -0.142 -1.621 -1.073 1.949 sum 3.692 1.416 26.672 26.964 Atomic orbital electron populations 1.22092 0.93690 1.03180 1.02906 1.21207 0.95337 0.97345 0.82754 0.89569 1.21588 0.80371 1.01416 0.96907 1.46020 1.07659 1.59795 1.24188 1.21148 0.91205 0.76276 0.81381 1.90687 1.71366 1.49168 1.34577 1.22319 0.90419 1.05695 1.01008 1.21603 0.95717 0.80762 0.98272 0.88333 1.22746 0.91840 0.96812 1.03848 1.22423 0.95331 0.96725 1.04883 1.21802 0.88247 0.86379 0.74578 1.90728 1.85249 1.16279 1.55927 1.46548 1.14355 1.08641 1.67503 1.45874 1.67640 1.14571 1.08404 1.19843 0.76675 0.86512 0.84250 1.90707 1.50328 1.17304 1.84927 1.23294 1.06241 1.02246 0.94739 1.84675 1.87050 1.18309 1.04403 1.22474 1.50051 0.98237 0.96860 0.92112 1.25594 0.93287 1.02320 0.94962 1.70029 1.44648 1.37785 1.03241 0.85850 0.81071 0.79916 0.79429 1.18477 1.18711 1.15930 0.93730 0.91168 0.89456 0.89298 0.90701 0.75230 0.87322 0.83821 0.85622 0.88374 0.87300 0.86311 0.75552 0.74963 0.87372 0.86584 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.11 2.73 44.99 0.12 2.23 16 3 H 0.09 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.12 1.45 5.23 86.38 0.45 1.91 16 5 N -0.72 -7.84 5.39 -463.07 -2.49 -10.33 16 6 C 0.51 6.49 7.71 87.66 0.68 7.17 16 7 O -0.58 -11.42 14.96 -3.03 -0.05 -11.47 16 8 C -0.15 -0.88 5.31 29.85 0.16 -0.72 16 9 C 0.14 1.08 3.02 45.45 0.14 1.22 16 10 H 0.10 0.78 7.99 -2.38 -0.02 0.76 16 11 C -0.11 -0.30 6.70 31.65 0.21 -0.09 16 12 C -0.15 -1.34 6.86 30.59 0.21 -1.13 16 13 C 0.50 9.68 8.43 87.90 0.74 10.42 16 14 O -0.60 -18.39 18.03 -3.05 -0.05 -18.44 16 15 N -0.72 -11.03 5.46 -439.44 -2.40 -13.43 16 16 N -0.71 -12.86 4.52 -442.54 -2.00 -14.86 16 17 C 0.54 15.69 7.81 87.66 0.68 16.37 16 18 O -0.56 -20.63 15.52 -3.02 -0.05 -20.68 16 19 C -0.11 -3.86 6.16 71.24 0.44 -3.42 16 20 S -0.17 -8.12 18.55 -56.49 -1.05 -9.16 16 21 C -0.53 -29.73 10.04 67.95 0.68 -29.05 16 22 H 0.06 3.62 8.03 -2.91 -0.02 3.60 16 23 C 0.04 2.50 5.50 84.86 0.47 2.96 16 24 N -0.92 -55.06 13.97 21.65 0.30 -54.76 16 25 Si 0.92 43.67 27.74 68.60 1.90 45.57 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 28 H -0.24 -11.15 6.74 99.48 0.67 -10.48 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.41 3.68 8.14 -92.71 -0.75 2.92 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.13 -0.35 7.89 -2.39 -0.02 -0.36 16 38 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.41 7.58 8.19 -92.70 -0.76 6.82 16 42 H 0.41 5.62 8.60 -92.70 -0.80 4.82 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 45 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -84.40 392.49 -1.53 -85.93 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -1.31 Total: 15.54 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.66 Total: 6.09 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -6.59 Total: -93.38 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.15 Total: -50.59 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.16 kcal Total: -84.40 -1.53 -85.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533997681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.948 kcal (2) G-P(sol) polarization free energy of solvation -84.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds