Wall clock time and date at job start Wed Apr 1 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.34775 * 119.99726 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99903 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47095 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99908 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00205 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99509 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46975 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47140 * 119.99726 * 14 12 10 17 17 H 1.48503 * 109.47013 * 240.00167 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.34775 * 120.00181 * 179.97438 * 22 21 19 24 24 O 1.21273 * 119.99997 * 0.02562 * 23 22 21 25 25 C 1.50703 * 120.00072 * 179.97438 * 23 22 21 26 26 C 1.52999 * 117.49969 * 248.75187 * 25 23 22 27 27 C 1.52997 * 117.49944 * 180.08585 * 25 23 22 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46677 * 299.99657 * 8 6 5 35 35 H 1.09000 * 109.47443 * 59.99182 * 8 6 5 36 36 H 0.96997 * 119.99635 * 180.02562 * 13 12 10 37 37 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 38 38 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 39 39 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 40 40 H 0.97002 * 119.99778 * 0.02562 * 22 21 19 41 41 H 1.09008 * 115.54573 * 34.41879 * 25 23 22 42 42 H 1.08990 * 117.50162 * 359.97438 * 26 25 23 43 43 H 1.09001 * 117.49728 * 145.02247 * 26 25 23 44 44 H 1.08999 * 117.50046 * 214.97750 * 27 25 23 45 45 H 1.08996 * 117.50156 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1910 7 8 3.5697 -1.8839 3.1398 8 6 5.6749 -1.5367 2.1310 9 16 6.2781 -2.3899 3.6089 10 6 8.0099 -2.3771 3.2841 11 1 8.3862 -1.9239 2.3788 12 6 8.8905 -2.9495 4.1916 13 7 8.4317 -3.5023 5.2947 14 14 10.7264 -2.9353 3.8476 15 1 10.9818 -2.2593 2.5503 16 1 11.4279 -2.2046 4.9336 17 1 11.2291 -4.3313 3.7852 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 7 2.7098 0.2150 -4.7061 23 6 3.1375 -0.1993 -5.9152 24 8 3.4769 -1.3524 -6.0759 25 6 3.1929 0.7701 -7.0677 26 6 2.2024 0.5610 -8.2150 27 6 3.6854 0.2384 -8.4151 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9825 -0.4622 0.4321 34 1 5.9636 -2.0991 1.2431 35 1 6.1093 -0.5380 2.0856 36 1 9.0471 -3.9019 5.9291 37 1 2.2491 -1.6319 -1.1524 38 1 3.6539 -1.1197 -3.3923 39 1 1.9842 -1.5494 -3.8349 40 1 2.4387 1.1374 -4.5774 41 1 3.4514 1.7964 -6.8067 42 1 1.5111 -0.2778 -8.1364 43 1 1.8097 1.4497 -8.7091 44 1 4.2676 0.9149 -9.0408 45 1 3.9698 -0.8125 -8.4679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534004379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:32 Heat of formation + Delta-G solvation = -91.085507 kcal Electronic energy + Delta-G solvation = -26291.394084 eV Core-core repulsion = 22242.831354 eV Total energy + Delta-G solvation = -4048.562730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83033 -40.02193 -39.17299 -36.91178 -36.50416 -34.82244 -33.83642 -32.45467 -31.81043 -29.50001 -28.59539 -26.10041 -25.42111 -24.43847 -22.90233 -21.96726 -21.01286 -20.64437 -20.43349 -18.46261 -17.92651 -17.22368 -17.03270 -16.43393 -16.25291 -16.23479 -15.78444 -15.45763 -15.13255 -14.82846 -14.71737 -14.65483 -14.10037 -13.76855 -13.55421 -13.37756 -13.14194 -12.99616 -12.97777 -12.76744 -12.60976 -12.32725 -12.03029 -11.87420 -11.40708 -11.11600 -11.08902 -11.04907 -11.01998 -10.77994 -10.47316 -10.34421 -9.84387 -9.73835 -9.59721 -9.48674 -9.11346 -9.03377 -8.27534 -6.53644 -6.24655 -3.95508 2.00427 2.07868 2.25210 2.88005 2.97259 3.01700 3.20009 3.26289 3.30709 3.37928 3.63617 4.07379 4.17596 4.22194 4.29756 4.35007 4.40023 4.65021 4.69574 4.81537 4.86268 4.89691 5.07508 5.10808 5.11957 5.23971 5.28259 5.29941 5.44595 5.45889 5.55775 5.65359 5.67487 5.80466 5.82662 5.83187 5.96594 6.08624 6.45305 6.90232 7.02555 7.55773 7.57927 7.60490 7.76187 8.32717 8.50038 9.21055 10.82806 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.002027 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.301407 B =13807.328315 C =16227.547421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.098 0.902 4 C 0.113 3.887 5 N -0.741 5.741 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.720 5.720 19 C 0.513 3.487 20 O -0.536 6.536 21 C 0.098 3.902 22 N -0.715 5.715 23 C 0.546 3.454 24 O -0.539 6.539 25 C -0.195 4.195 26 C -0.152 4.152 27 C -0.147 4.147 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.408 0.592 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.413 0.587 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 10.070 -23.896 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.116 0.884 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.373 5.373 19 C 0.299 3.701 20 O -0.413 6.413 21 C -0.030 4.030 22 N -0.370 5.370 23 C 0.332 3.668 24 O -0.416 6.416 25 C -0.216 4.216 26 C -0.190 4.190 27 C -0.184 4.184 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.243 0.757 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.251 0.749 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.230 9.231 -22.243 29.611 hybrid contribution 2.086 0.729 -1.388 2.609 sum -15.145 9.960 -23.631 29.782 Atomic orbital electron populations 1.22107 0.93791 1.02857 1.03209 1.21308 0.95104 0.97868 0.82990 0.88429 1.21622 0.81233 1.01418 0.96938 1.46002 1.06720 1.62160 1.24743 1.20336 0.89556 0.76678 0.81565 1.90715 1.69850 1.45911 1.32400 1.23534 0.93412 1.05750 1.07767 1.85396 1.04721 1.73042 1.20140 1.22905 0.91470 1.44266 1.09730 0.90864 1.24999 0.99642 0.94514 0.94457 1.70029 1.35338 1.35469 1.09415 0.86110 0.82918 0.78020 0.78413 1.19613 1.20546 1.20536 1.46039 1.67206 1.14665 1.09408 1.20499 0.77542 0.87364 0.84744 1.90716 1.50156 1.15751 1.84657 1.21087 1.03942 0.92943 0.85011 1.45609 1.67745 1.14883 1.08790 1.19680 0.76167 0.88134 0.82795 1.90725 1.48095 1.19137 1.83633 1.22159 1.09604 1.00407 0.89480 1.22971 0.93256 1.03970 0.98774 1.22994 0.96651 1.03434 0.95317 0.90866 0.91601 0.91862 0.89796 0.90759 0.76766 0.89211 0.89218 0.92210 0.75706 0.87893 0.88152 0.74881 0.85590 0.88193 0.87619 0.87736 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.13 0.96 2.73 -67.93 -0.19 0.78 16 3 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 4 C 0.11 1.06 5.23 -4.04 -0.02 1.04 16 5 N -0.74 -8.66 5.39 -60.29 -0.32 -8.98 16 6 C 0.53 9.27 7.85 -10.98 -0.09 9.18 16 7 O -0.51 -11.06 15.86 5.55 0.09 -10.98 16 8 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 11 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 14 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 N -0.72 -4.60 4.52 -53.80 -0.24 -4.84 16 19 C 0.51 3.94 7.86 -10.98 -0.09 3.85 16 20 O -0.54 -5.66 15.33 5.55 0.09 -5.57 16 21 C 0.10 0.68 6.15 -5.19 -0.03 0.64 16 22 N -0.72 -5.47 5.53 -61.47 -0.34 -5.81 16 23 C 0.55 4.95 7.61 -10.98 -0.08 4.87 16 24 O -0.54 -6.79 16.26 5.56 0.09 -6.70 16 25 C -0.20 -1.24 6.19 -91.77 -0.57 -1.81 16 26 C -0.15 -0.78 10.24 -26.69 -0.27 -1.06 16 27 C -0.15 -0.88 10.05 -26.69 -0.27 -1.14 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.40 3.82 8.14 -40.82 -0.33 3.49 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.41 2.05 8.60 -40.82 -0.35 1.70 16 38 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 2.88 7.44 -40.82 -0.30 2.57 16 41 H 0.13 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.11 0.82 7.67 -51.93 -0.40 0.42 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -37.31 403.48 -8.72 -46.03 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.82 Total: 3.43 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.83 Total: 0.07 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.17 Total: -44.84 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.26 Total: -23.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.31 -8.72 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534004379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.060 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds