Wall clock time and date at job start Wed Apr 1 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.34775 * 120.00395 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00117 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99849 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00178 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99850 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99953 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99774 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47170 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46941 * 120.00396 * 14 12 10 17 17 H 1.48493 * 109.47411 * 240.00238 * 14 12 10 18 18 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 19 19 C 1.34780 * 119.99910 * 85.00011 * 18 2 1 20 20 O 1.21281 * 119.99723 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00182 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.47365 * 179.97438 * 21 19 18 23 23 H 1.08998 * 110.43184 * 307.53871 * 22 21 19 24 24 C 1.54628 * 110.48676 * 184.99567 * 22 21 19 25 25 C 1.54479 * 101.76486 * 216.52439 * 24 22 21 26 26 N 1.46759 * 105.47495 * 25.41313 * 25 24 22 27 27 C 1.34426 * 111.30144 * 342.99094 * 26 25 24 28 28 O 1.21277 * 124.93986 * 180.43879 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 33 33 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 34 34 H 0.97006 * 119.99812 * 0.02562 * 5 4 2 35 35 H 1.09005 * 109.46976 * 299.99599 * 8 6 5 36 36 H 1.08997 * 109.47274 * 59.99965 * 8 6 5 37 37 H 0.97002 * 119.99905 * 179.97438 * 13 12 10 38 38 H 0.96994 * 119.99975 * 265.00388 * 18 2 1 39 39 H 1.09007 * 109.46680 * 299.99959 * 21 19 18 40 40 H 1.09000 * 109.47439 * 59.99224 * 21 19 18 41 41 H 1.09002 * 110.97131 * 334.64518 * 24 22 21 42 42 H 1.09002 * 110.96722 * 98.40771 * 24 22 21 43 43 H 1.08999 * 110.24585 * 144.41877 * 25 24 22 44 44 H 1.09006 * 110.24116 * 266.41505 * 25 24 22 45 45 H 0.97003 * 124.34754 * 162.97963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5698 -1.8840 3.1396 8 6 5.6749 -1.5367 2.1307 9 16 6.2782 -2.3900 3.6086 10 6 8.0100 -2.3772 3.2838 11 1 8.3863 -1.9240 2.3786 12 6 8.8906 -2.9487 4.1918 13 7 8.4320 -3.5006 5.2953 14 14 10.7265 -2.9357 3.8471 15 1 10.9817 -2.2605 2.5492 16 1 11.4287 -2.2038 4.9319 17 1 11.2287 -4.3318 3.7864 18 7 2.0184 -0.6906 -1.1961 19 6 2.1471 -0.0183 -2.3571 20 8 1.8591 1.1586 -2.4115 21 6 2.6490 -0.7288 -3.5877 22 6 2.7000 0.2542 -4.7590 23 1 1.7394 0.7556 -4.8771 24 6 3.0923 -0.4781 -6.0632 25 6 3.9692 0.5809 -6.7674 26 7 4.5039 1.4245 -5.6921 27 6 3.8065 1.2651 -4.5539 28 8 4.0313 1.8477 -3.5143 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9824 -0.4621 0.4320 35 1 5.9636 -2.0991 1.2427 36 1 6.1093 -0.5381 2.0855 37 1 9.0474 -3.9003 5.9297 38 1 2.2490 -1.6317 -1.1525 39 1 3.6482 -1.1213 -3.3984 40 1 1.9762 -1.5507 -3.8325 41 1 3.6665 -1.3790 -5.8472 42 1 2.2102 -0.7129 -6.6591 43 1 4.7832 0.0977 -7.3079 44 1 3.3644 1.1781 -7.4500 45 1 5.2630 2.0203 -5.7900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534180896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:07 Heat of formation + Delta-G solvation = -117.339032 kcal Electronic energy + Delta-G solvation = -27190.043060 eV Core-core repulsion = 23140.341891 eV Total energy + Delta-G solvation = -4049.701168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97893 -39.80367 -38.94860 -36.59996 -36.41160 -33.60854 -33.40110 -32.41992 -31.38598 -29.45240 -29.16455 -26.32750 -25.87386 -25.33820 -22.38676 -22.01002 -20.77240 -20.30637 -19.95693 -17.96253 -17.71362 -17.32734 -16.95682 -16.65804 -16.22128 -15.73627 -15.39133 -15.06349 -14.89376 -14.79635 -14.23185 -14.12178 -13.98171 -13.76544 -13.47704 -13.17499 -13.09713 -12.92752 -12.86985 -12.77537 -12.55387 -12.27707 -12.13528 -11.90865 -11.75151 -11.46474 -11.19906 -11.06322 -11.00873 -10.74639 -10.06794 -9.82395 -9.79887 -9.44305 -9.43484 -9.26221 -9.07103 -8.90543 -8.22394 -6.48995 -6.21042 -3.91271 2.39523 2.53789 2.87557 3.02233 3.05678 3.11167 3.22174 3.29058 3.34246 3.73358 3.90864 3.92398 4.20873 4.21196 4.40213 4.50673 4.69757 4.79839 4.88851 4.94644 4.99123 5.05759 5.10821 5.14249 5.17499 5.23437 5.30736 5.39346 5.47268 5.56068 5.57799 5.74217 5.81372 5.90692 5.96888 6.16319 6.29245 6.48505 6.59694 6.70097 7.29935 7.61001 7.69865 8.03009 8.11722 8.36545 8.60753 9.24554 10.86455 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.002389 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.327527 B =11715.535291 C =13851.582343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.114 3.886 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.731 5.731 19 C 0.512 3.488 20 O -0.514 6.514 21 C -0.126 4.126 22 C -0.109 4.109 23 H 0.116 0.884 24 C -0.132 4.132 25 C 0.102 3.898 26 N -0.741 5.741 27 C 0.518 3.482 28 O -0.502 6.502 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 5.186 -27.390 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.392 6.392 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.385 5.385 19 C 0.298 3.702 20 O -0.388 6.388 21 C -0.166 4.166 22 C -0.131 4.131 23 H 0.134 0.866 24 C -0.170 4.170 25 C -0.023 4.023 26 N -0.398 5.398 27 C 0.303 3.697 28 O -0.375 6.375 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.159 5.448 -25.075 30.324 hybrid contribution 2.577 0.458 -1.815 3.186 sum -13.581 5.906 -26.891 30.699 Atomic orbital electron populations 1.22090 0.94216 1.02484 1.02967 1.21203 0.94738 0.97980 0.83330 0.88658 1.21605 0.81141 1.01195 0.97165 1.46005 1.06839 1.61871 1.24691 1.20312 0.89508 0.76744 0.81608 1.90705 1.69874 1.46161 1.32450 1.23531 0.93570 1.05735 1.07568 1.85374 1.04627 1.72993 1.20367 1.22911 0.91531 1.44143 1.09652 0.90896 1.24996 0.99599 0.94580 0.94460 1.70028 1.35289 1.35581 1.09410 0.86114 0.82993 0.77950 0.78424 1.19618 1.20562 1.20576 1.46083 1.68543 1.14164 1.09697 1.20438 0.77888 0.87446 0.84460 1.90757 1.48133 1.15247 1.84694 1.21548 1.03990 0.98733 0.92378 1.21722 1.00412 0.96064 0.94861 0.86606 1.22733 1.00703 0.98171 0.95363 1.22023 0.98013 0.92250 0.90033 1.46253 1.34867 1.46371 1.12349 1.20718 0.83010 0.82850 0.83162 1.90831 1.69219 1.49235 1.28170 0.92121 0.91695 0.91209 0.90103 0.90998 0.76598 0.89296 0.89215 0.92251 0.76479 0.88456 0.87799 0.89535 0.88894 0.90209 0.91124 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.13 1.28 2.73 -67.93 -0.19 1.09 16 3 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 4 C 0.11 1.29 5.23 -4.05 -0.02 1.27 16 5 N -0.74 -10.06 5.39 -60.30 -0.32 -10.38 16 6 C 0.53 9.99 7.85 -10.98 -0.09 9.91 16 7 O -0.52 -11.71 15.86 5.55 0.09 -11.63 16 8 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 14 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.73 -6.23 4.52 -53.81 -0.24 -6.48 16 19 C 0.51 5.14 7.26 -10.99 -0.08 5.06 16 20 O -0.51 -7.32 13.70 -15.87 -0.22 -7.54 16 21 C -0.13 -0.80 5.09 -27.89 -0.14 -0.94 16 22 C -0.11 -0.73 2.54 -90.63 -0.23 -0.96 16 23 H 0.12 0.84 7.90 -51.93 -0.41 0.43 16 24 C -0.13 -0.39 6.70 -25.10 -0.17 -0.56 16 25 C 0.10 0.34 7.78 -3.13 -0.02 0.31 16 26 N -0.74 -5.06 6.24 -59.20 -0.37 -5.43 16 27 C 0.52 5.37 7.70 -10.86 -0.08 5.29 16 28 O -0.50 -7.84 15.63 -15.87 -0.25 -8.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 4.85 8.14 -40.82 -0.33 4.52 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 36 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.40 2.69 8.60 -40.82 -0.35 2.34 16 39 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.19 7.91 -51.93 -0.41 -0.22 16 42 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -40.19 392.42 -9.03 -49.22 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.88 Total: 3.76 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.25 Total: 3.51 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.20 Total: -47.86 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.38 Total: -27.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.19 -9.03 -49.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534180896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.120 kcal (2) G-P(sol) polarization free energy of solvation -40.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds