Wall clock time and date at job start Wed Apr 1 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47346 * 240.00004 * 2 1 3 5 5 C 1.50696 * 109.46847 * 65.00090 * 4 2 1 6 6 N 1.34782 * 119.99607 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00272 * 0.02562 * 5 4 2 8 8 C 1.50709 * 109.47031 * 120.00043 * 2 1 3 9 9 O 1.21274 * 119.99643 * 120.00288 * 8 2 1 10 10 N 1.34775 * 119.99520 * 299.99787 * 8 2 1 11 11 C 1.46503 * 119.99565 * 180.02562 * 10 8 2 12 12 C 1.53001 * 109.47079 * 176.30990 * 11 10 8 13 13 H 1.09000 * 112.96221 * 309.32432 * 12 11 10 14 14 C 1.53944 * 113.76836 * 177.65019 * 12 11 10 15 15 C 1.53943 * 86.28809 * 222.08812 * 14 12 11 16 16 N 1.47575 * 113.77104 * 81.00696 * 12 11 10 17 17 C 1.34778 * 134.49244 * 318.92644 * 16 12 11 18 18 O 1.21277 * 119.99766 * 4.82882 * 17 16 12 19 19 C 1.50702 * 119.99789 * 184.82899 * 17 16 12 20 20 S 1.80997 * 109.46837 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00042 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99703 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00104 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00054 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00192 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47071 * 89.99391 * 25 23 21 27 27 H 1.48490 * 109.47552 * 209.99750 * 25 23 21 28 28 H 1.48502 * 109.47231 * 329.99914 * 25 23 21 29 29 H 1.08997 * 109.46541 * 59.99635 * 1 2 3 30 30 H 1.09002 * 109.46715 * 300.00250 * 1 2 3 31 31 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47153 * 185.00062 * 4 2 1 33 33 H 1.08999 * 109.46784 * 304.99944 * 4 2 1 34 34 H 0.96998 * 120.00005 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99709 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00598 * 0.02562 * 10 8 2 37 37 H 1.09006 * 109.47135 * 296.30865 * 11 10 8 38 38 H 1.09000 * 109.47403 * 56.30212 * 11 10 8 39 39 H 1.08998 * 113.74247 * 336.43303 * 14 12 11 40 40 H 1.09007 * 113.74238 * 107.74246 * 14 12 11 41 41 H 1.09000 * 113.76802 * 137.91313 * 15 14 12 42 42 H 1.08998 * 113.77071 * 269.19084 * 15 14 12 43 43 H 1.08998 * 109.47278 * 299.99694 * 19 17 16 44 44 H 1.08997 * 109.47504 * 60.00347 * 19 17 16 45 45 H 0.97006 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4765 6 7 1.9855 -0.3914 -3.7001 7 8 1.0118 1.0874 -2.3632 8 6 2.0324 -0.7105 1.2305 9 8 2.7296 -1.6965 1.1192 10 7 1.7067 -0.2499 2.4546 11 6 2.1955 -0.9402 3.6508 12 6 1.7626 -0.1673 4.8983 13 1 2.0096 0.8931 4.8485 14 6 2.1772 -0.8397 6.2196 15 6 0.7743 -0.4679 6.7328 16 7 0.3714 -0.4354 5.3111 17 6 -0.7957 -0.5891 4.6548 18 8 -0.8131 -0.5959 3.4422 19 6 -2.0790 -0.7524 5.4278 20 16 -3.4600 -0.9365 4.2723 21 6 -4.7928 -1.1039 5.4126 22 1 -4.6013 -1.0748 6.4750 23 6 -6.0886 -1.2744 4.9453 24 7 -6.3219 -1.3104 3.6504 25 14 -7.5015 -1.4526 6.1542 26 1 -8.0562 -0.1115 6.4685 27 1 -8.5633 -2.2991 5.5533 28 1 -7.0082 -2.0890 7.4020 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1264 -0.7995 -1.2056 33 1 1.6055 -1.7198 -1.2951 34 1 2.4894 -1.2153 -3.7907 35 1 1.7286 0.1094 -4.4901 36 1 1.1488 0.5385 2.5436 37 1 1.7795 -1.9472 3.6847 38 1 3.2835 -0.9976 3.6181 39 1 2.3424 -1.9135 6.1327 40 1 2.9853 -0.3248 6.7393 41 1 0.2935 -1.2585 7.3090 42 1 0.7295 0.5038 7.2246 43 1 -2.0130 -1.6389 6.0585 44 1 -2.2417 0.1263 6.0519 45 1 -7.2276 -1.4292 3.3239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534955563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:49 Heat of formation + Delta-G solvation = -86.436740 kcal Electronic energy + Delta-G solvation = -27729.523519 eV Core-core repulsion = 23681.162375 eV Total energy + Delta-G solvation = -4048.361145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55359 -40.02916 -39.01937 -37.41114 -34.55421 -34.12848 -33.84680 -32.44173 -30.77350 -28.83401 -28.10924 -27.53452 -25.48682 -24.39097 -22.86844 -22.01406 -20.79888 -19.81224 -18.82997 -17.80508 -17.61465 -17.39953 -16.63539 -16.37790 -16.13150 -15.64748 -15.59645 -15.20919 -14.82342 -14.78069 -14.34429 -14.07326 -13.95416 -13.52379 -13.30545 -13.11164 -12.79124 -12.62732 -12.48305 -12.36352 -12.15474 -11.93507 -11.82599 -11.59412 -11.23407 -11.13960 -11.07337 -11.03462 -10.97434 -10.77136 -10.05869 -9.89197 -9.83161 -9.58156 -9.30806 -9.07856 -8.93445 -8.63581 -8.25157 -6.51092 -6.22890 -3.93393 2.49523 2.63451 2.77610 3.02523 3.12407 3.21182 3.23083 3.28802 3.49903 3.59053 4.18016 4.19303 4.51555 4.59052 4.66014 4.79667 4.84398 4.94502 5.02413 5.07150 5.12345 5.15011 5.29075 5.35599 5.42176 5.49200 5.59005 5.65541 5.66744 5.70556 5.83623 5.96209 6.11156 6.13526 6.14419 6.19916 6.50112 6.51972 6.65395 7.10548 7.58183 7.60858 7.79411 8.09389 8.32182 8.33785 8.53949 9.22470 10.84407 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.002992 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.935866 B = 9356.929111 C =11976.391383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.123 4.123 5 C 0.518 3.482 6 N -0.859 5.859 7 O -0.538 6.538 8 C 0.524 3.476 9 O -0.557 6.557 10 N -0.709 5.709 11 C 0.123 3.877 12 C 0.120 3.880 13 H 0.096 0.904 14 C -0.142 4.142 15 C 0.103 3.897 16 N -0.650 5.650 17 C 0.554 3.446 18 O -0.505 6.505 19 C -0.146 4.146 20 S -0.057 6.057 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.225 2.411 -2.176 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.164 4.164 5 C 0.303 3.697 6 N -0.423 5.423 7 O -0.414 6.414 8 C 0.311 3.689 9 O -0.436 6.436 10 N -0.359 5.359 11 C -0.001 4.001 12 C 0.016 3.984 13 H 0.114 0.886 14 C -0.180 4.180 15 C -0.021 4.021 16 N -0.390 5.390 17 C 0.343 3.657 18 O -0.378 6.378 19 C -0.296 4.296 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.242 0.758 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.927 2.284 -4.028 22.411 hybrid contribution -1.155 0.038 1.964 2.278 sum 20.772 2.322 -2.065 21.003 Atomic orbital electron populations 1.21875 0.91163 1.03129 1.04285 1.20983 0.99112 1.00308 0.90949 0.88157 1.21453 1.03483 1.00307 0.91110 1.20720 0.78296 0.85385 0.85280 1.43892 1.60419 1.29636 1.08311 1.90736 1.39342 1.24644 1.86697 1.20510 0.79400 0.84259 0.84780 1.90650 1.39203 1.26611 1.87124 1.45758 1.52942 1.32269 1.04978 1.21444 0.99012 0.96696 0.82981 1.23030 0.81252 0.99526 0.94570 0.88588 1.23537 0.97258 1.02346 0.94895 1.23116 0.92655 1.01837 0.84444 1.50330 1.06397 1.73700 1.08556 1.20056 0.82708 0.75099 0.87824 1.90695 1.85246 1.48595 1.13243 1.23479 0.97263 1.04495 1.04384 1.85366 0.94629 1.95001 1.08077 1.22852 0.93403 1.57914 0.94237 0.91029 1.24986 0.98240 0.94592 0.95735 1.70016 1.21540 1.46366 1.12277 0.86176 0.80739 0.78281 0.80355 1.20263 1.20736 1.19722 0.90120 0.91142 0.92382 0.88172 0.88010 0.77037 0.76975 0.75834 0.91019 0.90424 0.88570 0.89469 0.89797 0.89757 0.89642 0.89536 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.83 37.16 0.33 -1.85 16 2 C -0.09 -1.16 2.37 -91.76 -0.22 -1.38 16 3 H 0.10 1.18 7.95 -51.93 -0.41 0.77 16 4 C -0.12 -1.31 4.52 -27.88 -0.13 -1.43 16 5 C 0.52 5.62 7.82 -10.99 -0.09 5.53 16 6 N -0.86 -5.83 8.87 31.22 0.28 -5.55 16 7 O -0.54 -7.93 14.80 5.56 0.08 -7.85 16 8 C 0.52 7.47 7.15 -10.98 -0.08 7.39 16 9 O -0.56 -9.22 15.92 5.56 0.09 -9.14 16 10 N -0.71 -9.35 4.30 -60.29 -0.26 -9.61 16 11 C 0.12 1.45 5.21 -4.04 -0.02 1.42 16 12 C 0.12 1.16 4.28 -66.87 -0.29 0.87 16 13 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.14 -0.96 7.86 -25.80 -0.20 -1.17 16 15 C 0.10 0.88 8.63 -2.85 -0.02 0.86 16 16 N -0.65 -8.33 3.50 -170.20 -0.60 -8.93 16 17 C 0.55 9.95 7.99 -10.98 -0.09 9.86 16 18 O -0.50 -10.42 14.19 5.56 0.08 -10.35 16 19 C -0.15 -2.92 5.92 36.01 0.21 -2.71 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 21 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 25 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 30 H 0.07 1.13 7.56 -51.93 -0.39 0.73 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.93 7.96 -51.93 -0.41 0.52 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.40 1.58 8.83 -40.82 -0.36 1.22 16 35 H 0.40 2.35 8.93 -40.82 -0.36 1.99 16 36 H 0.41 5.34 7.14 -40.82 -0.29 5.05 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -37.99 391.79 -8.05 -46.04 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.74 Total: 7.73 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.39 Total: 4.48 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.16 Total: -49.47 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: 0.25 Total: -27.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.99 -8.05 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534955563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.396 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds