Wall clock time and date at job start Wed Apr 1 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.52997 * 109.47038 * 119.99498 * 2 1 3 5 5 C 1.50702 * 109.47402 * 294.99870 * 4 2 1 6 6 N 1.34776 * 119.99855 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99671 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47091 * 239.99917 * 2 1 3 9 9 O 1.21277 * 119.99941 * 333.48474 * 8 2 1 10 10 N 1.34775 * 119.99778 * 153.48863 * 8 2 1 11 11 C 1.47581 * 134.49092 * 174.78886 * 10 8 2 12 12 C 1.53949 * 86.11727 * 155.36090 * 11 10 8 13 13 N 1.46498 * 113.73822 * 269.26414 * 12 11 10 14 14 C 1.46498 * 120.00574 * 60.00270 * 13 12 11 15 15 C 1.34786 * 119.99677 * 239.99601 * 13 12 11 16 16 O 1.21278 * 119.99804 * 0.02562 * 15 13 12 17 17 C 1.50697 * 119.99664 * 180.02562 * 15 13 12 18 18 S 1.81006 * 109.46940 * 180.02562 * 17 15 13 19 19 C 1.76194 * 100.00102 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00022 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99948 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47161 * 59.99967 * 23 21 19 25 25 H 1.48503 * 109.47053 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47293 * 300.00108 * 23 21 19 27 27 C 1.47579 * 134.49307 * 354.79210 * 10 8 2 28 28 H 1.08998 * 109.47329 * 306.54689 * 1 2 3 29 29 H 1.08997 * 109.47052 * 66.54888 * 1 2 3 30 30 H 1.09004 * 109.46981 * 186.55083 * 1 2 3 31 31 H 1.09000 * 109.47099 * 55.00374 * 4 2 1 32 32 H 1.09006 * 109.47019 * 175.00072 * 4 2 1 33 33 H 0.96995 * 120.00324 * 0.02562 * 6 5 4 34 34 H 0.97003 * 119.99822 * 180.02562 * 6 5 4 35 35 H 1.09001 * 113.76906 * 41.05716 * 11 10 8 36 36 H 1.08995 * 113.77271 * 269.66360 * 11 10 8 37 37 H 1.09003 * 113.74043 * 137.95393 * 12 11 10 38 38 H 1.08995 * 109.47175 * 89.99317 * 14 13 12 39 39 H 1.08995 * 109.47482 * 210.00070 * 14 13 12 40 40 H 1.08998 * 109.46697 * 329.99255 * 14 13 12 41 41 H 1.08999 * 109.47347 * 299.99725 * 17 15 13 42 42 H 1.09003 * 109.47421 * 60.00360 * 17 15 13 43 43 H 0.97004 * 119.99871 * 180.02562 * 22 21 19 44 44 H 1.09001 * 113.76864 * 90.34105 * 27 10 8 45 45 H 1.08999 * 113.77179 * 318.93744 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0573 2.4766 6 7 1.9845 -0.3917 3.7002 7 8 1.0110 1.0871 2.3632 8 6 2.0324 -0.7104 -1.2305 9 8 1.3484 -1.5590 -1.7624 10 7 3.2417 -0.4028 -1.7396 11 6 4.0704 -0.9426 -2.8350 12 6 4.7217 0.4513 -2.8887 13 7 4.0611 1.3758 -3.8134 14 6 2.6522 1.7261 -3.6172 15 6 4.7496 1.9041 -4.8447 16 8 5.9158 1.6138 -5.0073 17 6 4.0701 2.8556 -5.7955 18 16 5.2486 3.3863 -7.0627 19 6 4.2184 4.4575 -8.0092 20 1 3.1880 4.6079 -7.7227 21 6 4.7315 5.1089 -9.1223 22 7 5.9874 4.9259 -9.4712 23 14 3.6395 6.2450 -10.1253 24 1 3.1452 7.3468 -9.2611 25 1 4.4201 6.8127 -11.2540 26 1 2.4849 5.4784 -10.6587 27 6 4.2691 0.6091 -1.4257 28 1 -0.3634 0.6119 0.8256 29 1 -0.3633 0.4090 -0.9428 30 1 -0.3633 -1.0210 0.1172 31 1 1.6054 -1.7197 1.2952 32 1 3.1264 -0.7993 1.2056 33 1 2.4884 -1.2155 3.7909 34 1 1.7276 0.1092 4.4902 35 1 3.5034 -1.1973 -3.7304 36 1 4.7514 -1.7339 -2.5219 37 1 5.8044 0.4254 -3.0128 38 1 2.5822 2.6050 -2.9763 39 1 2.1938 1.9426 -4.5821 40 1 2.1323 0.8913 -3.1472 41 1 3.2273 2.3539 -6.2711 42 1 3.7117 3.7254 -5.2450 43 1 6.3461 5.3815 -10.2489 44 1 5.0085 0.2734 -0.6985 45 1 3.8608 1.5932 -1.1959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536276719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:53 Heat of formation + Delta-G solvation = -68.035786 kcal Electronic energy + Delta-G solvation = -27639.540855 eV Core-core repulsion = 23591.977636 eV Total energy + Delta-G solvation = -4047.563219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23930 -40.16799 -39.13688 -37.87709 -34.57068 -34.45162 -34.20933 -32.43736 -30.37061 -28.68450 -28.34211 -26.77717 -26.63424 -25.50281 -24.02048 -21.92289 -20.90158 -19.61507 -18.64670 -18.05962 -17.84287 -17.63515 -17.08716 -16.94990 -15.99391 -15.86902 -15.74646 -15.49158 -15.26143 -14.80946 -14.53756 -14.08048 -13.88397 -13.73623 -13.53047 -13.28273 -13.08251 -12.90283 -12.65115 -12.54303 -12.33875 -12.12715 -11.99954 -11.96906 -11.63099 -11.57532 -11.35586 -11.05527 -11.03971 -10.77650 -10.50737 -10.21089 -9.90584 -9.82548 -9.53859 -9.06617 -9.02289 -8.64432 -8.25964 -6.51994 -6.22477 -3.93440 2.11378 2.19710 2.45257 2.77245 2.90336 3.04189 3.23623 3.24466 3.28791 3.54432 3.96397 4.15539 4.19566 4.19833 4.36765 4.51053 4.63094 4.85670 4.87493 4.94250 4.98828 5.09085 5.09870 5.12747 5.17279 5.20700 5.37701 5.44709 5.46661 5.53332 5.64330 5.68091 5.73439 5.78692 5.87268 6.00929 6.11193 6.25669 6.51600 6.75862 7.30970 7.41970 7.58788 7.73113 7.83971 8.34237 8.43507 9.22887 10.84844 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.002089 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.705452 B =13400.836017 C =13883.641578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.131 4.131 5 C 0.520 3.480 6 N -0.857 5.857 7 O -0.534 6.534 8 C 0.538 3.462 9 O -0.534 6.534 10 N -0.644 5.644 11 C 0.093 3.907 12 C 0.114 3.886 13 N -0.605 5.605 14 C 0.076 3.924 15 C 0.538 3.462 16 O -0.512 6.512 17 C -0.150 4.150 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.089 3.911 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.402 0.598 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.100 0.900 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -13.101 26.766 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.172 4.172 5 C 0.305 3.695 6 N -0.421 5.421 7 O -0.410 6.410 8 C 0.328 3.672 9 O -0.410 6.410 10 N -0.381 5.381 11 C -0.031 4.031 12 C 0.008 3.992 13 N -0.340 5.340 14 C -0.068 4.068 15 C 0.327 3.673 16 O -0.386 6.386 17 C -0.300 4.300 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.035 4.035 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.230 0.770 34 H 0.233 0.767 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.568 -13.339 25.888 29.650 hybrid contribution -1.908 0.790 0.078 2.066 sum -7.476 -12.548 25.966 29.792 Atomic orbital electron populations 1.21773 0.91693 1.02893 1.03342 1.20986 0.98976 1.00461 0.90627 0.88324 1.21577 1.03178 1.00626 0.91808 1.20488 0.78577 0.85338 0.85080 1.43878 1.60248 1.29616 1.08314 1.90756 1.39274 1.24430 1.86583 1.20335 0.79694 0.82442 0.84752 1.90727 1.55505 1.33588 1.61154 1.50253 1.16107 1.36036 1.35665 1.23736 0.91751 0.97107 0.90487 1.22365 0.99372 0.88966 0.88484 1.47546 1.11812 1.46380 1.28301 1.21856 0.81202 1.00831 1.02883 1.20408 0.86581 0.80205 0.80142 1.90695 1.16189 1.59818 1.71889 1.23562 1.05053 1.00221 1.01210 1.85364 1.13948 1.57931 1.26091 1.22813 0.99224 1.31479 1.14882 0.90964 1.24988 0.95456 0.96552 0.96549 1.70004 1.13099 1.41304 1.25861 0.86225 0.79898 0.80232 0.79160 1.19918 1.20805 1.19925 1.23725 0.89047 0.93217 0.97479 0.90030 0.92171 0.92172 0.87949 0.88437 0.76983 0.76653 0.89415 0.88511 0.85489 0.92665 0.90500 0.90948 0.89130 0.89109 0.92116 0.88239 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.30 37.16 0.31 -0.99 16 2 C -0.09 -0.73 2.19 -91.77 -0.20 -0.93 16 3 H 0.10 0.81 7.61 -51.93 -0.40 0.41 16 4 C -0.13 -0.71 5.16 -27.88 -0.14 -0.86 16 5 C 0.52 3.37 7.85 -10.98 -0.09 3.28 16 6 N -0.86 -2.47 8.87 31.22 0.28 -2.19 16 7 O -0.53 -5.67 14.81 5.56 0.08 -5.59 16 8 C 0.54 5.58 6.16 -10.99 -0.07 5.52 16 9 O -0.53 -7.64 16.98 5.56 0.09 -7.54 16 10 N -0.64 -5.73 2.22 -178.53 -0.40 -6.12 16 11 C 0.09 0.86 8.31 -2.97 -0.02 0.84 16 12 C 0.11 1.16 4.51 -70.14 -0.32 0.84 16 13 N -0.61 -7.99 3.09 -175.74 -0.54 -8.54 16 14 C 0.08 0.85 9.19 59.85 0.55 1.40 16 15 C 0.54 9.70 7.69 -10.98 -0.08 9.62 16 16 O -0.51 -10.94 15.35 5.56 0.09 -10.85 16 17 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.09 0.62 7.66 -2.97 -0.02 0.60 16 28 H 0.08 0.80 6.10 -51.93 -0.32 0.48 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.40 0.01 8.83 -40.82 -0.36 -0.35 16 34 H 0.40 0.96 8.93 -40.82 -0.36 0.59 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.13 1.35 7.25 -51.93 -0.38 0.98 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 40 H 0.07 0.80 5.32 -51.93 -0.28 0.53 16 41 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 42 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.62 7.72 -51.93 -0.40 0.22 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -38.48 387.59 -7.33 -45.82 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.55 Total: -1.74 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.28 Total: 3.64 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.07 Total: -42.10 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.26 Total: -23.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.48 -7.33 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536276719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.221 kcal (2) G-P(sol) polarization free energy of solvation -38.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds