Wall clock time and date at job start Wed Apr 1 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47496 * 2 1 4 4 N 1.40448 * 126.87537 * 85.39110 * 3 2 1 5 5 C 1.30859 * 106.96831 * 179.97438 * 4 3 2 6 6 N 1.32915 * 109.21920 * 0.24323 * 5 4 3 7 7 C 1.31770 * 109.77539 * 359.58892 * 6 5 4 8 8 C 1.47918 * 126.10127 * 180.15833 * 7 6 5 9 9 C 1.39629 * 119.99024 * 20.58537 * 8 7 6 10 10 C 1.37664 * 120.00565 * 179.72568 * 9 8 7 11 11 C 1.39702 * 119.98897 * 0.54639 * 10 9 8 12 12 C 1.47765 * 120.00627 * 179.74858 * 11 10 9 13 13 O 1.21568 * 120.00122 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00204 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00233 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47124 * 180.02562 * 15 14 12 17 17 O 1.21294 * 119.99996 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99983 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00431 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99478 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00440 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99839 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46897 * 90.00913 * 23 21 19 25 25 H 1.48502 * 109.46864 * 210.00157 * 23 21 19 26 26 H 1.48497 * 109.47611 * 330.00702 * 23 21 19 27 27 C 1.39702 * 119.98691 * 359.72953 * 11 10 9 28 28 C 1.37662 * 119.98980 * 359.97438 * 27 11 10 29 29 H 1.09008 * 109.46919 * 299.99835 * 1 2 3 30 30 H 1.09001 * 109.47299 * 59.99367 * 1 2 3 31 31 H 1.08995 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47345 * 240.00404 * 2 1 3 33 33 H 1.09001 * 109.47299 * 120.00633 * 2 1 3 34 34 H 1.08004 * 125.38673 * 179.97438 * 5 4 3 35 35 H 1.07991 * 119.99974 * 0.02562 * 9 8 7 36 36 H 1.07996 * 120.00854 * 180.25179 * 10 9 8 37 37 H 0.96997 * 119.99939 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47052 * 300.00180 * 15 14 12 39 39 H 1.08997 * 109.47176 * 60.00577 * 15 14 12 40 40 H 0.97003 * 120.00125 * 0.02562 * 18 16 15 41 41 H 0.96995 * 119.99722 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.00334 * 179.97438 * 27 11 10 43 43 H 1.08001 * 119.99387 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2142 2.2059 1.1199 5 6 2.6587 3.3537 0.6758 6 7 2.7494 3.3047 -0.6494 7 6 2.3716 2.1175 -1.0785 8 6 2.3347 1.6715 -2.4884 9 6 3.0986 2.3351 -3.4505 10 6 3.0689 1.9167 -4.7617 11 6 2.2655 0.8354 -5.1316 12 6 2.2290 0.3895 -6.5399 13 8 1.5301 -0.5518 -6.8616 14 7 2.9704 1.0264 -7.4678 15 6 2.9338 0.5847 -8.8642 16 6 3.8449 1.4555 -9.6906 17 8 4.4642 2.3561 -9.1647 18 7 3.9714 1.2335 -11.0138 19 6 4.8006 2.0253 -11.7656 20 1 5.3527 2.8268 -11.2972 21 6 4.9315 1.7961 -13.1298 22 7 4.2601 0.8207 -13.6995 23 14 6.0608 2.8755 -14.1540 24 1 7.4233 2.2854 -14.1764 25 1 5.5370 2.9641 -15.5408 26 1 6.1198 4.2349 -13.5593 27 6 1.4968 0.1754 -4.1697 28 6 1.5318 0.5905 -2.8576 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9079 4.2074 1.2887 35 1 3.7166 3.1735 -3.1652 36 1 3.6629 2.4274 -5.5052 37 1 3.5283 1.7772 -7.2112 38 1 3.2671 -0.4512 -8.9264 39 1 1.9148 0.6620 -9.2431 40 1 3.4759 0.5135 -11.4345 41 1 4.3513 0.6609 -14.6519 42 1 0.8753 -0.6604 -4.4554 43 1 0.9379 0.0800 -2.1138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539456852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:13 Heat of formation + Delta-G solvation = 49.214963 kcal Electronic energy + Delta-G solvation = -27829.442347 eV Core-core repulsion = 23683.812301 eV Total energy + Delta-G solvation = -4145.630045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48208 -40.29250 -38.78445 -37.98217 -35.74561 -34.60385 -33.82568 -33.00230 -31.47513 -31.32437 -30.87115 -30.12451 -27.78221 -25.27512 -24.64889 -23.85427 -23.22355 -21.69830 -21.21096 -20.35989 -19.71633 -18.44042 -17.91833 -17.74073 -16.43590 -16.11531 -15.97684 -15.85514 -15.39359 -15.37844 -15.01541 -14.66413 -14.60314 -14.28582 -14.03866 -13.96000 -13.71346 -13.51950 -13.33503 -13.10520 -12.87203 -12.57191 -12.33583 -12.26447 -12.00537 -11.74323 -11.66538 -11.34273 -11.15300 -10.48484 -10.47036 -10.38761 -10.35423 -10.17220 -9.98983 -9.67501 -9.40605 -9.06037 -8.82155 -8.69338 -8.14392 -6.55185 -3.97336 0.06561 0.99159 1.39838 1.79601 2.47063 2.89863 3.09314 3.15212 3.21005 3.27213 3.50961 3.61962 3.69999 3.92855 4.07916 4.30711 4.33090 4.37291 4.52615 4.60472 4.63941 4.74595 4.80073 4.92932 5.00723 5.06540 5.13272 5.22158 5.26924 5.49855 5.65988 5.76332 5.81241 5.87172 5.88251 5.97435 5.99689 6.02650 6.06664 6.33156 6.40703 6.53524 7.42717 7.64404 7.68838 7.87533 8.25308 8.40568 9.00628 9.34557 9.81970 10.61533 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.001786 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.684396 B =15670.372757 C =16687.659863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 N -0.368 5.368 4 N -0.318 5.318 5 C 0.201 3.799 6 N -0.530 5.530 7 C 0.319 3.681 8 C -0.015 4.015 9 C -0.071 4.071 10 C -0.083 4.083 11 C -0.106 4.106 12 C 0.552 3.448 13 O -0.542 6.542 14 N -0.699 5.699 15 C 0.108 3.892 16 C 0.426 3.574 17 O -0.598 6.598 18 N -0.547 5.547 19 C -0.306 4.306 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.268 1.268 27 C -0.059 4.059 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.220 0.780 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.411 0.589 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.146 0.854 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 -2.582 25.272 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 N -0.159 5.159 4 N -0.146 5.146 5 C -0.101 4.101 6 N -0.257 5.257 7 C 0.046 3.954 8 C -0.019 4.019 9 C -0.091 4.091 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.338 3.662 13 O -0.421 6.421 14 N -0.353 5.353 15 C -0.019 4.019 16 C 0.212 3.788 17 O -0.485 6.485 18 N -0.182 5.182 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.078 4.078 28 C -0.144 4.144 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.236 0.764 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.915 -2.659 25.750 26.795 hybrid contribution 0.467 0.319 -0.790 0.971 sum -6.449 -2.339 24.960 25.886 Atomic orbital electron populations 1.22285 0.93451 1.03954 1.03766 1.22120 0.95936 0.77462 1.05558 1.50572 1.48561 1.12892 1.03901 1.78094 1.24539 1.03911 1.08014 1.25962 0.97371 0.96459 0.90346 1.70681 1.25119 1.18384 1.11490 1.22262 0.95638 0.87717 0.89803 1.17738 0.99823 0.97101 0.87189 1.21175 0.97531 0.98932 0.91466 1.21484 0.97093 0.95106 0.96511 1.20217 0.99308 0.97539 0.93899 1.18148 0.80145 0.82846 0.85022 1.90774 1.41311 1.28389 1.81636 1.45647 1.46224 1.35564 1.07826 1.21010 1.00937 0.98929 0.81071 1.19701 0.87398 0.88053 0.83657 1.90497 1.51197 1.35295 1.71472 1.41792 1.39956 1.30652 1.05762 1.19736 1.21285 1.12712 0.89770 0.87612 1.25337 0.97984 0.97215 0.97168 1.69612 1.41116 1.29951 1.12676 0.85803 0.79576 0.80059 0.78541 1.20248 1.20782 1.19281 1.21156 0.96736 0.98838 0.91049 1.21523 0.99310 0.96495 0.97091 0.91110 0.91373 0.89586 0.87416 0.88080 0.76372 0.83716 0.84002 0.74916 0.89528 0.89519 0.77002 0.91545 0.83647 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 9.57 37.15 0.36 -0.44 16 2 C 0.11 0.62 6.33 -4.05 -0.03 0.60 16 3 N -0.37 -3.44 3.66 -58.88 -0.22 -3.66 16 4 N -0.32 -3.32 12.70 29.26 0.37 -2.95 16 5 C 0.20 1.95 13.01 -91.98 -1.20 0.75 16 6 N -0.53 -6.05 10.99 -12.49 -0.14 -6.19 16 7 C 0.32 3.37 7.61 -155.44 -1.18 2.18 16 8 C -0.02 -0.15 5.85 -104.89 -0.61 -0.76 16 9 C -0.07 -0.70 9.68 -39.27 -0.38 -1.08 16 10 C -0.08 -0.87 9.52 -39.24 -0.37 -1.25 16 11 C -0.11 -1.25 5.88 -104.91 -0.62 -1.86 16 12 C 0.55 8.26 7.77 -12.37 -0.10 8.16 16 13 O -0.54 -9.48 16.33 5.31 0.09 -9.39 16 14 N -0.70 -11.02 5.48 -62.45 -0.34 -11.36 16 15 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 16 C 0.43 9.43 7.85 -10.99 -0.09 9.34 16 17 O -0.60 -14.76 15.24 5.55 0.08 -14.67 16 18 N -0.55 -13.19 5.29 -10.96 -0.06 -13.25 16 19 C -0.31 -8.13 9.68 -14.93 -0.14 -8.28 16 20 H 0.11 2.93 7.16 -52.48 -0.38 2.56 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.43 13.05 55.50 0.72 -22.70 16 23 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.06 -0.58 9.58 -39.25 -0.38 -0.96 16 28 C -0.12 -1.03 8.49 -39.27 -0.33 -1.36 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.35 6.92 -51.93 -0.36 -0.01 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.11 0.47 5.70 -51.93 -0.30 0.17 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.22 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.15 1.34 7.97 -52.49 -0.42 0.93 16 36 H 0.14 1.39 6.39 -52.49 -0.34 1.06 16 37 H 0.41 6.29 5.45 -40.82 -0.22 6.06 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 43 H 0.14 0.81 3.27 -52.49 -0.17 0.63 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -33.43 371.55 -8.68 -42.11 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.57 Total: 13.80 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -5.20 Total: 7.48 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.34 Total: -60.12 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.43 -8.68 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539456852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.326 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds