Wall clock time and date at job start Wed Apr 1 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.52998 * 109.47095 * 240.00349 * 2 1 3 5 5 N 1.46506 * 109.47237 * 184.99775 * 4 2 1 6 6 C 1.34773 * 119.99969 * 179.72043 * 5 4 2 7 7 O 1.21281 * 120.00220 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00080 * 180.02562 * 6 5 4 9 9 S 1.80989 * 109.47203 * 180.02562 * 8 6 5 10 10 C 1.76206 * 100.00010 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99621 * 359.97438 * 10 9 8 12 12 C 1.38794 * 119.99924 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00193 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99992 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46840 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47269 * 119.99682 * 14 12 10 17 17 H 1.48497 * 109.47235 * 239.99840 * 14 12 10 18 18 N 1.46496 * 109.47150 * 120.00402 * 2 1 3 19 19 C 1.46495 * 120.00433 * 60.00114 * 18 2 1 20 20 C 1.34785 * 119.99599 * 239.99930 * 18 2 1 21 21 O 1.21275 * 120.00515 * 0.02562 * 20 18 2 22 22 C 1.50704 * 119.99627 * 179.97438 * 20 18 2 23 23 H 1.08999 * 110.21707 * 320.47506 * 22 20 18 24 24 C 1.54476 * 110.24371 * 82.50085 * 22 20 18 25 25 C 1.54632 * 101.76656 * 144.41382 * 24 22 20 26 26 C 1.51280 * 104.19282 * 335.20502 * 25 24 22 27 27 O 1.21284 * 124.93804 * 196.23625 * 26 25 24 28 28 N 1.34419 * 110.11844 * 16.24530 * 26 25 24 29 29 H 1.09003 * 109.47481 * 59.99568 * 1 2 3 30 30 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47138 * 299.99960 * 1 2 3 32 32 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 33 33 H 1.08998 * 109.47454 * 305.00112 * 4 2 1 34 34 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.46762 * 300.00389 * 8 6 5 36 36 H 1.08998 * 109.46924 * 59.99727 * 8 6 5 37 37 H 0.97004 * 119.99966 * 180.02562 * 13 12 10 38 38 H 1.08992 * 109.47187 * 89.99782 * 19 18 2 39 39 H 1.08998 * 109.47275 * 210.00519 * 19 18 2 40 40 H 1.09001 * 109.46751 * 329.99603 * 19 18 2 41 41 H 1.09003 * 110.96898 * 262.52999 * 24 22 20 42 42 H 1.09002 * 110.97274 * 26.29160 * 24 22 20 43 43 H 1.08994 * 110.48626 * 216.51930 * 25 24 22 44 44 H 1.09001 * 110.59830 * 93.93465 * 25 24 22 45 45 H 0.96999 * 124.34941 * 180.39036 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1725 -1.4335 -2.1883 7 8 3.5690 -1.8926 -3.1349 8 6 5.6744 -1.5422 -2.1278 9 16 6.2771 -2.4018 -3.6021 10 6 8.0089 -2.3891 -3.2773 11 1 8.3854 -1.9325 -2.3738 12 6 8.8891 -2.9648 -4.1829 13 7 8.4301 -3.5208 -5.2842 14 14 10.7251 -2.9507 -3.8389 15 1 10.9808 -2.2708 -2.5437 16 1 11.2270 -4.3467 -3.7720 17 1 11.4271 -2.2240 -4.9271 18 7 2.0183 -0.6907 1.1961 19 6 1.6644 -2.0932 1.4279 20 6 2.7932 -0.0356 2.0833 21 8 3.0858 1.1256 1.8917 22 6 3.2950 -0.7460 3.3140 23 1 2.5169 -1.3928 3.7193 24 6 4.5571 -1.5708 2.9778 25 6 5.3866 -1.4207 4.2742 26 6 4.8911 -0.1279 4.8839 27 8 5.4651 0.4957 5.7515 28 7 3.7222 0.2290 4.3244 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9824 -0.4627 -0.4316 35 1 6.1095 -0.5436 -2.0865 36 1 5.9626 -2.1011 -1.2375 37 1 9.0453 -3.9235 -5.9170 38 1 2.4157 -2.7376 0.9715 39 1 1.6237 -2.2853 2.5000 40 1 0.6904 -2.3002 0.9846 41 1 4.3035 -2.6152 2.7957 42 1 5.0858 -1.1450 2.1249 43 1 6.4490 -1.3502 4.0413 44 1 5.1994 -2.2567 4.9481 45 1 3.2247 1.0281 4.5586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571808023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:00 Heat of formation + Delta-G solvation = -132.656154 kcal Electronic energy + Delta-G solvation = -28081.911815 eV Core-core repulsion = 24031.546447 eV Total energy + Delta-G solvation = -4050.365369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04934 -40.85788 -40.18657 -37.93886 -37.17658 -35.30690 -34.57923 -33.08966 -32.23355 -30.89093 -29.15577 -27.87359 -27.72898 -26.75359 -24.10492 -22.37182 -21.75853 -21.55664 -20.37223 -19.75306 -18.85035 -18.44724 -17.86251 -17.56530 -17.15828 -16.87639 -16.73920 -16.50814 -16.27402 -15.86694 -15.65319 -14.98451 -14.85863 -14.70216 -14.52034 -14.40053 -14.14663 -14.01320 -13.91993 -13.61386 -13.41990 -13.15455 -13.14955 -13.03054 -12.91333 -12.84680 -12.80401 -12.57139 -12.11981 -11.94449 -11.70774 -11.19499 -11.15462 -11.02213 -10.98802 -10.27467 -10.19163 -10.11367 -9.78194 -8.65485 -8.34655 -6.11969 1.27097 1.37825 1.41331 1.42260 1.47257 1.58267 1.59921 1.77416 2.24608 2.28728 2.39253 2.99852 3.21023 3.30686 3.31816 3.57014 3.67846 3.88652 3.93747 4.03229 4.06203 4.21770 4.27717 4.30059 4.43806 4.49266 4.60891 4.67805 4.75108 4.80961 4.82401 4.92221 4.99616 5.00909 5.07356 5.27806 5.36742 5.42829 5.48897 5.67143 5.89399 6.20403 6.24969 6.40307 6.97407 7.07429 7.13933 7.19306 8.74598 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.003048 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.524072 B = 9184.813008 C =11514.584247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.089 0.911 4 C 0.112 3.888 5 N -0.711 5.711 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.132 4.132 9 S -0.142 6.142 10 C -0.547 4.547 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 0.995 3.005 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.276 1.276 18 N -0.597 5.597 19 C 0.056 3.944 20 C 0.503 3.497 21 O -0.572 6.572 22 C 0.117 3.883 23 H 0.149 0.851 24 C -0.119 4.119 25 C -0.148 4.148 26 C 0.512 3.488 27 O -0.587 6.587 28 N -0.710 5.710 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.405 0.595 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 1.384 20.558 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 H 0.107 0.893 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.283 4.283 9 S 0.085 5.915 10 C -0.694 4.694 11 H 0.099 0.901 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.817 3.183 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.201 1.201 18 N -0.330 5.330 19 C -0.086 4.086 20 C 0.290 3.710 21 O -0.451 6.451 22 C 0.008 3.992 23 H 0.167 0.833 24 C -0.157 4.157 25 C -0.188 4.188 26 C 0.301 3.699 27 O -0.467 6.467 28 N -0.364 5.364 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.240 0.760 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.158 0.842 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.157 0.843 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.668 1.358 19.146 26.775 hybrid contribution 1.763 1.356 1.073 2.470 sum -16.905 2.714 20.220 26.495 Atomic orbital electron populations 1.22012 0.91204 1.04143 1.03542 1.21290 0.96513 0.97020 0.82506 0.89322 1.21851 0.79211 1.01959 0.98236 1.45701 1.08028 1.59514 1.23180 1.19950 0.88692 0.77052 0.82026 1.90697 1.70258 1.48401 1.34394 1.23375 0.95042 1.05328 1.04556 1.85505 1.05602 1.74380 1.26021 1.23227 0.91884 1.44067 1.10268 0.90147 1.26062 1.04957 0.93829 0.94015 1.70175 1.37277 1.36403 1.10764 0.84955 0.76199 0.78383 0.78730 1.18245 1.19680 1.20134 1.47964 1.49427 1.13963 1.21651 1.22293 1.02911 0.78888 1.04457 1.21158 0.77861 0.86679 0.85254 1.90765 1.58561 1.18686 1.77110 1.21959 1.00503 0.90330 0.86368 0.83347 1.22734 0.92478 1.03081 0.97360 1.22420 1.02650 0.95667 0.98019 1.21565 0.80109 0.87709 0.80550 1.90744 1.61177 1.60661 1.34156 1.46099 1.23916 1.26998 1.39359 0.90363 0.90022 0.91381 0.91139 0.90195 0.75971 0.88346 0.87017 0.91975 0.91597 0.87633 0.88986 0.84176 0.90746 0.87644 0.84332 0.74978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.17 71.98 0.66 -0.51 16 2 C 0.13 1.68 2.80 44.99 0.13 1.81 16 3 H 0.09 1.58 6.90 -2.39 -0.02 1.57 16 4 C 0.11 2.02 4.97 86.38 0.43 2.45 16 5 N -0.71 -16.71 5.39 -463.05 -2.49 -19.20 16 6 C 0.54 18.60 7.85 87.66 0.69 19.29 16 7 O -0.56 -24.21 15.86 -3.03 -0.05 -24.26 16 8 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 9 S -0.14 -7.68 20.57 -56.49 -1.16 -8.85 16 10 C -0.55 -30.73 9.50 67.95 0.65 -30.09 16 11 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 12 C 0.02 0.92 5.49 84.86 0.47 1.38 16 13 N -0.91 -54.98 13.22 21.65 0.29 -54.69 16 14 Si 1.00 43.15 29.55 68.60 2.03 45.17 16 15 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 N -0.60 -5.80 2.24 -822.63 -1.85 -7.65 16 19 C 0.06 0.17 9.33 127.77 1.19 1.36 16 20 C 0.50 6.96 6.56 87.66 0.58 7.53 16 21 O -0.57 -13.46 15.91 -3.02 -0.05 -13.51 16 22 C 0.12 0.98 3.12 44.70 0.14 1.11 16 23 H 0.15 0.06 6.33 -2.39 -0.02 0.05 16 24 C -0.12 -0.85 6.56 31.65 0.21 -0.64 16 25 C -0.15 -1.54 6.86 30.59 0.21 -1.33 16 26 C 0.51 10.03 8.43 87.90 0.74 10.77 16 27 O -0.59 -17.66 18.03 -3.04 -0.05 -17.72 16 28 N -0.71 -10.64 5.47 -442.98 -2.42 -13.06 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.39 6.66 -2.39 -0.02 0.38 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.37 7.84 -2.39 -0.02 1.36 16 34 H 0.40 8.42 7.87 -92.70 -0.73 7.69 16 35 H 0.10 3.59 8.14 -2.39 -0.02 3.58 16 36 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.11 -0.31 5.95 -2.39 -0.01 -0.33 16 40 H 0.09 0.12 6.43 -2.39 -0.02 0.11 16 41 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.07 0.83 7.91 -2.39 -0.02 0.81 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.41 6.54 8.96 -92.71 -0.83 5.70 16 Total: -1.00 -88.99 388.60 0.23 -88.76 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.52 Total: 16.49 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.52 Total: 8.51 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -6.48 Total: -94.60 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -0.15 Total: -55.49 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.85 kcal Total: -88.99 0.23 -88.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571808023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.898 kcal (2) G-P(sol) polarization free energy of solvation -88.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds