Wall clock time and date at job start Wed Apr 1 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00151 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47220 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47248 * 120.00156 * 14 12 10 17 17 H 1.48501 * 109.47068 * 240.00173 * 14 12 10 18 18 N 1.46500 * 109.46849 * 240.00422 * 2 1 3 19 19 C 1.46497 * 120.00196 * 299.99592 * 18 2 1 20 20 C 1.34780 * 119.99989 * 120.00089 * 18 2 1 21 21 O 1.21273 * 120.00005 * 359.97438 * 20 18 2 22 22 C 1.50708 * 119.99880 * 179.97438 * 20 18 2 23 23 H 1.08995 * 110.21736 * 320.47685 * 22 20 18 24 24 C 1.54482 * 110.24386 * 82.49448 * 22 20 18 25 25 C 1.54633 * 101.76120 * 144.41560 * 24 22 20 26 26 C 1.51278 * 104.19763 * 335.20440 * 25 24 22 27 27 O 1.21275 * 124.94532 * 196.23252 * 26 25 24 28 28 N 1.34424 * 110.11417 * 16.25011 * 26 25 24 29 29 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 31 31 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 36 36 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 37 37 H 0.96999 * 120.00126 * 180.02562 * 13 12 10 38 38 H 1.09009 * 109.47005 * 90.00146 * 19 18 2 39 39 H 1.08998 * 109.47508 * 210.00173 * 19 18 2 40 40 H 1.09006 * 109.47154 * 330.00735 * 19 18 2 41 41 H 1.08992 * 110.97029 * 262.53351 * 24 22 20 42 42 H 1.08996 * 110.97060 * 26.30189 * 24 22 20 43 43 H 1.08999 * 110.48382 * 216.52641 * 25 24 22 44 44 H 1.09000 * 110.59405 * 93.93733 * 25 24 22 45 45 H 0.97004 * 124.34679 * 180.38541 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1909 7 8 3.5700 -1.8834 3.1397 8 6 5.6749 -1.5371 2.1302 9 16 6.2783 -2.3903 3.6081 10 6 8.0101 -2.3774 3.2832 11 1 8.3863 -1.9249 2.3776 12 6 8.8907 -2.9497 4.1907 13 7 8.4321 -3.5025 5.2938 14 14 10.7266 -2.9367 3.8459 15 1 10.9817 -2.2615 2.5481 16 1 11.4288 -2.2058 4.9311 17 1 11.2285 -4.3329 3.7841 18 7 2.0182 -0.6905 -1.1962 19 6 1.6643 -2.0931 -1.4282 20 6 2.7931 -0.0355 -2.0834 21 8 3.0857 1.1257 -1.8916 22 6 3.2958 -0.7460 -3.3137 23 1 3.5811 -1.7688 -3.0678 24 6 2.2117 -0.7414 -4.4142 25 6 3.0645 -0.5995 -5.6962 26 6 4.3369 0.0683 -5.2234 27 8 5.1479 0.6081 -5.9457 28 7 4.4379 -0.0238 -3.8861 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.9824 -0.4622 0.4317 35 1 5.9629 -2.1007 1.2428 36 1 6.1099 -0.5387 2.0836 37 1 9.0476 -3.9022 5.9281 38 1 0.7374 -2.1443 -1.9995 39 1 2.4627 -2.5817 -1.9866 40 1 1.5294 -2.5968 -0.4709 41 1 1.6553 -1.6787 -4.4175 42 1 1.5399 0.1088 -4.2964 43 1 2.5534 0.0274 -6.4269 44 1 3.2831 -1.5789 -6.1217 45 1 5.1718 0.3399 -3.3664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571808024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:04 Heat of formation + Delta-G solvation = -101.965867 kcal Electronic energy + Delta-G solvation = -27832.385024 eV Core-core repulsion = 23783.350486 eV Total energy + Delta-G solvation = -4049.034538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44114 -39.98790 -39.03978 -37.15783 -36.45653 -34.27600 -32.45476 -32.29283 -31.76116 -29.49664 -28.63183 -27.46725 -26.06198 -25.40582 -23.59379 -21.82664 -20.94560 -20.41592 -19.69788 -18.31044 -17.93443 -17.75570 -16.77109 -16.52585 -16.32061 -15.97763 -15.58205 -15.29092 -14.88011 -14.82412 -14.27357 -14.11967 -14.06834 -13.81219 -13.67186 -13.58156 -13.28953 -13.16939 -13.01693 -12.85622 -12.71430 -12.53662 -12.45844 -12.22011 -11.84337 -11.72579 -11.35829 -11.08538 -11.04449 -10.77569 -10.50716 -10.27677 -9.83551 -9.50910 -9.49817 -9.22564 -9.10385 -8.97624 -8.27153 -6.53266 -6.24380 -3.95136 1.96490 2.10136 2.35192 2.93778 2.99655 3.03356 3.20283 3.26905 3.31568 3.62986 3.70877 3.76257 3.96986 4.18110 4.22432 4.36950 4.42687 4.57966 4.63688 4.79498 4.82121 4.98113 5.04565 5.08613 5.11099 5.14594 5.18902 5.24159 5.27122 5.32616 5.46926 5.57175 5.64897 5.75347 5.83715 5.97768 6.09699 6.28345 6.51047 6.59159 6.77036 7.55211 7.57674 7.61500 7.83980 8.33132 8.53199 9.21400 10.83091 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.002730 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.318926 B =10255.460024 C =12380.052393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.736 5.736 6 C 0.532 3.468 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.280 1.280 18 N -0.604 5.604 19 C 0.067 3.933 20 C 0.505 3.495 21 O -0.524 6.524 22 C 0.111 3.889 23 H 0.110 0.890 24 C -0.119 4.119 25 C -0.155 4.155 26 C 0.523 3.477 27 O -0.529 6.529 28 N -0.710 5.710 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 3.283 -20.125 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.127 0.873 4 C -0.014 4.014 5 N -0.391 5.391 6 C 0.319 3.681 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.338 5.338 19 C -0.075 4.075 20 C 0.291 3.709 21 O -0.399 6.399 22 C 0.002 3.998 23 H 0.127 0.873 24 C -0.157 4.157 25 C -0.195 4.195 26 C 0.309 3.691 27 O -0.404 6.404 28 N -0.366 5.366 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -20.175 3.292 -18.716 27.716 hybrid contribution 2.334 0.708 -1.233 2.733 sum -17.840 4.000 -19.949 27.060 Atomic orbital electron populations 1.22041 0.93323 1.02988 1.03153 1.21453 0.95119 0.98424 0.83063 0.87262 1.21653 0.81370 1.01202 0.97143 1.45926 1.06743 1.61899 1.24485 1.20306 0.89510 0.76736 0.81584 1.90704 1.69861 1.46117 1.32424 1.23528 0.93556 1.05695 1.07635 1.85371 1.04688 1.72935 1.20256 1.22906 0.91493 1.44248 1.09693 0.90894 1.24991 0.99625 0.94508 0.94444 1.70024 1.35335 1.35505 1.09432 0.86115 0.82929 0.78002 0.78459 1.19596 1.20528 1.20543 1.47908 1.50676 1.12813 1.22405 1.21973 1.01139 0.80948 1.03465 1.20739 0.78672 0.87218 0.84237 1.90774 1.56927 1.16348 1.75833 1.21690 0.88515 0.96722 0.92881 0.87264 1.22587 0.96377 1.04939 0.91812 1.22378 0.94698 1.03664 0.98769 1.20810 0.87618 0.78606 0.82095 1.90789 1.46375 1.44768 1.58511 1.45984 1.24257 1.58254 1.08135 0.91711 0.90686 0.91743 0.91097 0.90255 0.77006 0.89418 0.89276 0.92216 0.91819 0.90560 0.89998 0.88007 0.89345 0.87496 0.87149 0.74223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.19 37.15 0.34 -0.46 16 2 C 0.12 0.90 2.80 -67.94 -0.19 0.71 16 3 H 0.11 1.01 6.90 -51.93 -0.36 0.65 16 4 C 0.11 1.11 4.92 -4.04 -0.02 1.09 16 5 N -0.74 -9.37 5.39 -60.29 -0.32 -9.69 16 6 C 0.53 9.57 7.85 -10.99 -0.09 9.49 16 7 O -0.52 -11.24 15.86 5.56 0.09 -11.16 16 8 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 14 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 N -0.60 -3.77 2.24 -173.93 -0.39 -4.16 16 19 C 0.07 0.25 9.23 59.85 0.55 0.80 16 20 C 0.51 4.01 6.56 -10.98 -0.07 3.94 16 21 O -0.52 -6.28 15.91 5.56 0.09 -6.19 16 22 C 0.11 0.63 3.12 -68.16 -0.21 0.42 16 23 H 0.11 0.40 6.33 -51.93 -0.33 0.07 16 24 C -0.12 -0.40 6.56 -25.10 -0.16 -0.57 16 25 C -0.15 -0.76 6.86 -26.74 -0.18 -0.94 16 26 C 0.52 5.09 8.43 -10.86 -0.09 5.00 16 27 O -0.53 -7.63 18.03 5.56 0.10 -7.53 16 28 N -0.71 -6.04 5.47 -53.88 -0.29 -6.34 16 29 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.69 6.88 -51.93 -0.36 0.34 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 4.57 7.87 -40.82 -0.32 4.25 16 35 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.06 0.10 8.14 -51.92 -0.42 -0.32 16 39 H 0.08 0.18 5.95 -51.93 -0.31 -0.12 16 40 H 0.08 0.38 6.53 -51.93 -0.34 0.04 16 41 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.09 0.36 7.90 -51.93 -0.41 -0.05 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.42 3.87 8.96 -40.82 -0.37 3.50 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -39.11 388.62 -7.62 -46.74 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.54 Total: 1.43 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.29 Total: 3.73 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.28 Total: -45.48 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.28 Total: -24.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.11 -7.62 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571808024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.229 kcal (2) G-P(sol) polarization free energy of solvation -39.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds