Wall clock time and date at job start Wed Apr 1 2020 02:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46753 * 2 1 4 4 C 1.46503 * 119.99886 * 90.00263 * 3 2 1 5 5 C 1.53004 * 109.47064 * 89.99458 * 4 3 2 6 6 N 1.46503 * 109.47064 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99491 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99979 * 180.02562 * 7 6 5 10 10 H 1.09006 * 110.53658 * 302.61072 * 9 7 6 11 11 C 1.54626 * 110.48525 * 179.97438 * 9 7 6 12 12 C 1.54487 * 101.76119 * 216.52227 * 11 9 7 13 13 N 1.46756 * 105.47255 * 25.41844 * 12 11 9 14 14 C 1.34415 * 111.30335 * 342.97792 * 13 12 11 15 15 O 1.21282 * 124.94478 * 180.44380 * 14 13 12 16 16 C 1.34770 * 120.00357 * 269.99663 * 3 2 1 17 17 O 1.21283 * 120.00590 * 180.02562 * 16 3 2 18 18 C 1.50705 * 119.99469 * 0.02562 * 16 3 2 19 19 S 1.81007 * 109.47044 * 179.97438 * 18 16 3 20 20 C 1.76192 * 99.99969 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00606 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99835 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99991 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99874 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47125 * 90.00398 * 24 22 20 26 26 H 1.48502 * 109.47093 * 209.99666 * 24 22 20 27 27 H 1.48497 * 109.47194 * 329.99922 * 24 22 20 28 28 H 1.09007 * 109.47131 * 299.99581 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99660 * 1 2 3 30 30 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46733 * 240.00193 * 2 1 3 32 32 H 1.09001 * 109.46721 * 119.99561 * 2 1 3 33 33 H 1.08997 * 109.47102 * 329.99933 * 4 3 2 34 34 H 1.08998 * 109.47237 * 209.99178 * 4 3 2 35 35 H 1.09002 * 109.47225 * 60.00239 * 5 4 3 36 36 H 1.09000 * 109.47357 * 300.00059 * 5 4 3 37 37 H 0.96995 * 120.00004 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.97243 * 98.40451 * 11 9 7 39 39 H 1.08997 * 110.96807 * 334.64088 * 11 9 7 40 40 H 1.09002 * 110.23989 * 144.41449 * 12 11 9 41 41 H 1.08993 * 110.24361 * 266.32776 * 12 11 9 42 42 H 0.97010 * 124.35052 * 163.01029 * 13 12 11 43 43 H 1.08993 * 109.47499 * 299.99554 * 18 16 3 44 44 H 1.09000 * 109.47263 * 60.00574 * 18 16 3 45 45 H 0.96994 * 120.00261 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8314 1.7104 6 7 3.9519 2.5225 2.9789 7 6 5.1648 2.4516 3.5622 8 8 6.0538 1.8152 3.0372 9 6 5.4160 3.1620 4.8673 10 1 5.2088 4.2276 4.7687 11 6 6.8719 2.9343 5.3359 12 6 6.6973 2.8315 6.8674 13 7 5.3164 2.3798 7.0746 14 6 4.5730 2.5590 5.9692 15 8 3.3972 2.2785 5.8698 16 6 2.2430 2.0166 -1.1671 17 8 2.6476 3.1600 -1.1671 18 6 1.9913 1.3063 -2.4722 19 16 2.3828 2.4155 -3.8480 20 6 2.0083 1.3599 -5.2081 21 1 1.6535 0.3554 -5.0305 22 6 2.1704 1.8189 -6.5080 23 7 1.8911 1.0301 -7.5241 24 14 2.7848 3.5559 -6.8153 25 1 4.2676 3.5492 -6.8972 26 1 2.2210 4.0617 -8.0926 27 1 2.3545 4.4376 -5.7007 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6877 2.0284 34 1 2.0956 3.1411 1.1385 35 1 4.3883 2.2155 0.9508 36 1 3.8745 0.7622 1.8408 37 1 3.2409 3.0317 3.3986 38 1 7.5039 3.7820 5.0713 39 1 7.2732 2.0075 4.9259 40 1 7.3977 2.1046 7.2788 41 1 6.8504 3.8061 7.3307 42 1 4.9829 2.0011 7.9031 43 1 2.6212 0.4187 -2.5302 44 1 0.9432 1.0126 -2.5299 45 1 2.0039 1.3509 -8.4325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581150153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:16 Heat of formation + Delta-G solvation = -107.248379 kcal Electronic energy + Delta-G solvation = -27184.129294 eV Core-core repulsion = 23134.865689 eV Total energy + Delta-G solvation = -4049.263605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33253 -39.84671 -39.11964 -36.94621 -36.19437 -34.95709 -32.42815 -32.29617 -31.29017 -29.90353 -28.79090 -27.51059 -25.60239 -23.85957 -23.29029 -22.39568 -21.98409 -20.40594 -19.09208 -18.03124 -17.76814 -17.66801 -16.98984 -16.67148 -16.58466 -15.64911 -15.50137 -15.15886 -14.93887 -14.91288 -14.33123 -14.28217 -14.04839 -13.85407 -13.76203 -13.52794 -13.37083 -13.09744 -13.00608 -12.79416 -12.39459 -12.27925 -12.00371 -11.90883 -11.70646 -11.45560 -11.24326 -11.17203 -10.98883 -10.59323 -10.53087 -10.24853 -9.84888 -9.72239 -9.51876 -9.29798 -8.99340 -8.73688 -8.48273 -6.91031 -6.27898 -3.99584 1.85592 2.26203 2.51044 2.78708 2.87919 2.98358 3.29221 3.34599 3.51380 3.60380 3.70884 3.82698 4.29368 4.33930 4.39059 4.54865 4.59239 4.74654 4.78540 4.80475 4.89753 4.96977 5.10836 5.15691 5.17569 5.27938 5.29679 5.33703 5.54406 5.63853 5.70140 5.73502 5.78767 5.87343 5.96833 6.10981 6.12995 6.17448 6.36317 6.54256 7.17945 7.38980 7.61286 7.88356 7.95123 8.39624 8.42672 9.18302 10.81273 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002088 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.542734 B =13408.633295 C =14327.479785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.615 5.615 4 C 0.109 3.891 5 C 0.104 3.896 6 N -0.713 5.713 7 C 0.532 3.468 8 O -0.531 6.531 9 C -0.151 4.151 10 H 0.137 0.863 11 C -0.119 4.119 12 C 0.099 3.901 13 N -0.727 5.727 14 C 0.531 3.469 15 O -0.520 6.520 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.406 0.594 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.414 0.586 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 1.700 32.003 32.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.351 5.351 4 C -0.015 4.015 5 C -0.021 4.021 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.407 6.407 9 C -0.176 4.176 10 H 0.155 0.845 11 C -0.157 4.157 12 C -0.026 4.026 13 N -0.383 5.383 14 C 0.315 3.685 15 O -0.396 6.396 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.254 0.746 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.285 2.795 31.225 31.974 hybrid contribution -0.697 -0.672 0.225 0.994 sum 5.589 2.123 31.450 32.013 Atomic orbital electron populations 1.22223 0.95664 1.02452 1.02768 1.21626 0.94700 0.82007 1.03598 1.47853 1.67528 1.14709 1.05019 1.21434 0.94574 0.99683 0.85852 1.21794 0.97764 0.97552 0.85013 1.45759 1.13299 1.53327 1.24044 1.19673 0.82510 0.80947 0.85310 1.90739 1.43645 1.41815 1.64523 1.22178 0.98649 1.03361 0.93420 0.84512 1.22641 0.93679 1.06013 0.93376 1.22185 0.82713 1.00821 0.96865 1.46114 1.12288 1.64575 1.15370 1.20307 0.86563 0.77498 0.84142 1.90796 1.14714 1.51784 1.82263 1.20367 0.76353 0.86487 0.84682 1.90697 1.43893 1.17493 1.86805 1.23339 1.05485 1.03313 0.95015 1.84787 1.88139 1.21257 0.97560 1.22301 1.51685 1.01923 0.90864 0.89377 1.24715 0.93793 0.97938 0.94886 1.69936 1.46627 1.36234 0.98864 0.86733 0.80274 0.85049 0.79785 1.19210 1.19968 1.15942 0.92448 0.91811 0.91357 0.89600 0.90385 0.89973 0.89134 0.90449 0.91271 0.75839 0.88303 0.87885 0.89623 0.90479 0.74640 0.88468 0.88371 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.10 1.08 5.93 -4.04 -0.02 1.06 16 3 N -0.62 -8.17 2.47 -173.68 -0.43 -8.60 16 4 C 0.11 1.22 5.52 -4.04 -0.02 1.20 16 5 C 0.10 1.24 6.00 -4.04 -0.02 1.21 16 6 N -0.71 -7.40 5.29 -60.29 -0.32 -7.72 16 7 C 0.53 5.85 7.12 -10.98 -0.08 5.77 16 8 O -0.53 -7.70 15.49 5.56 0.09 -7.61 16 9 C -0.15 -1.06 3.32 -91.79 -0.31 -1.37 16 10 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 11 C -0.12 -0.59 6.48 -25.10 -0.16 -0.75 16 12 C 0.10 0.27 7.78 -3.12 -0.02 0.25 16 13 N -0.73 -3.61 6.24 -59.21 -0.37 -3.98 16 14 C 0.53 4.32 7.85 -10.86 -0.09 4.24 16 15 O -0.52 -5.96 17.17 5.56 0.10 -5.87 16 16 C 0.53 9.58 7.69 -10.99 -0.08 9.49 16 17 O -0.51 -11.02 15.44 5.56 0.09 -10.93 16 18 C -0.12 -2.37 4.71 36.01 0.17 -2.20 16 19 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 24 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.92 6.44 -51.93 -0.33 0.59 16 32 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.09 1.12 7.42 -51.93 -0.39 0.73 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.41 3.49 8.00 -40.82 -0.33 3.17 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.72 7.00 -51.93 -0.36 0.36 16 40 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.41 1.45 8.96 -40.82 -0.37 1.09 16 43 H 0.10 1.78 7.40 -51.92 -0.38 1.40 16 44 H 0.10 1.79 7.18 -51.92 -0.37 1.42 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -38.23 388.73 -7.68 -45.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.71 Total: 1.63 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.05 Total: 5.62 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.34 Total: -46.14 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.27 Total: -24.41 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.23 -7.68 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581150153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.347 kcal (2) G-P(sol) polarization free energy of solvation -38.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds