Wall clock time and date at job start Wed Apr 1 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46753 * 2 1 4 4 C 1.46503 * 119.99886 * 90.00263 * 3 2 1 5 5 C 1.53004 * 109.47064 * 89.99458 * 4 3 2 6 6 N 1.46503 * 109.47064 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99491 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99979 * 180.02562 * 7 6 5 10 10 H 1.09006 * 110.53658 * 302.61072 * 9 7 6 11 11 C 1.54626 * 110.48525 * 179.97438 * 9 7 6 12 12 C 1.54487 * 101.76119 * 216.52227 * 11 9 7 13 13 N 1.46756 * 105.47255 * 25.41844 * 12 11 9 14 14 C 1.34415 * 111.30335 * 342.97792 * 13 12 11 15 15 O 1.21282 * 124.94478 * 180.44380 * 14 13 12 16 16 C 1.34770 * 120.00357 * 269.99663 * 3 2 1 17 17 O 1.21283 * 120.00590 * 180.02562 * 16 3 2 18 18 C 1.50705 * 119.99469 * 0.02562 * 16 3 2 19 19 S 1.81007 * 109.47044 * 179.97438 * 18 16 3 20 20 C 1.76192 * 99.99969 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00606 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99835 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99991 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99874 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47125 * 90.00398 * 24 22 20 26 26 H 1.48502 * 109.47093 * 209.99666 * 24 22 20 27 27 H 1.48497 * 109.47194 * 329.99922 * 24 22 20 28 28 H 1.09007 * 109.47131 * 299.99581 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99660 * 1 2 3 30 30 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46733 * 240.00193 * 2 1 3 32 32 H 1.09001 * 109.46721 * 119.99561 * 2 1 3 33 33 H 1.08997 * 109.47102 * 329.99933 * 4 3 2 34 34 H 1.08998 * 109.47237 * 209.99178 * 4 3 2 35 35 H 1.09002 * 109.47225 * 60.00239 * 5 4 3 36 36 H 1.09000 * 109.47357 * 300.00059 * 5 4 3 37 37 H 0.96995 * 120.00004 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.97243 * 98.40451 * 11 9 7 39 39 H 1.08997 * 110.96807 * 334.64088 * 11 9 7 40 40 H 1.09002 * 110.23989 * 144.41449 * 12 11 9 41 41 H 1.08993 * 110.24361 * 266.32776 * 12 11 9 42 42 H 0.97010 * 124.35052 * 163.01029 * 13 12 11 43 43 H 1.08993 * 109.47499 * 299.99554 * 18 16 3 44 44 H 1.09000 * 109.47263 * 60.00574 * 18 16 3 45 45 H 0.96994 * 120.00261 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8314 1.7104 6 7 3.9519 2.5225 2.9789 7 6 5.1648 2.4516 3.5622 8 8 6.0538 1.8152 3.0372 9 6 5.4160 3.1620 4.8673 10 1 5.2088 4.2276 4.7687 11 6 6.8719 2.9343 5.3359 12 6 6.6973 2.8315 6.8674 13 7 5.3164 2.3798 7.0746 14 6 4.5730 2.5590 5.9692 15 8 3.3972 2.2785 5.8698 16 6 2.2430 2.0166 -1.1671 17 8 2.6476 3.1600 -1.1671 18 6 1.9913 1.3063 -2.4722 19 16 2.3828 2.4155 -3.8480 20 6 2.0083 1.3599 -5.2081 21 1 1.6535 0.3554 -5.0305 22 6 2.1704 1.8189 -6.5080 23 7 1.8911 1.0301 -7.5241 24 14 2.7848 3.5559 -6.8153 25 1 4.2676 3.5492 -6.8972 26 1 2.2210 4.0617 -8.0926 27 1 2.3545 4.4376 -5.7007 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6877 2.0284 34 1 2.0956 3.1411 1.1385 35 1 4.3883 2.2155 0.9508 36 1 3.8745 0.7622 1.8408 37 1 3.2409 3.0317 3.3986 38 1 7.5039 3.7820 5.0713 39 1 7.2732 2.0075 4.9259 40 1 7.3977 2.1046 7.2788 41 1 6.8504 3.8061 7.3307 42 1 4.9829 2.0011 7.9031 43 1 2.6212 0.4187 -2.5302 44 1 0.9432 1.0126 -2.5299 45 1 2.0039 1.3509 -8.4325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581150153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:15 Heat of formation + Delta-G solvation = -137.780630 kcal Electronic energy + Delta-G solvation = -27185.453271 eV Core-core repulsion = 23134.865689 eV Total energy + Delta-G solvation = -4050.587583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97097 -41.09245 -39.98056 -37.61547 -37.30437 -35.94015 -34.67810 -32.97902 -32.12312 -31.20938 -29.56977 -28.36640 -27.82836 -24.72048 -24.28657 -23.01040 -22.60346 -21.22945 -20.44708 -19.49847 -18.64528 -18.37958 -18.20815 -17.67659 -17.39606 -17.14532 -16.77532 -16.49079 -16.18499 -15.69808 -15.64998 -15.03068 -14.96441 -14.90901 -14.84261 -14.70994 -14.62802 -14.17437 -14.09590 -13.54620 -13.50666 -13.35949 -13.13232 -13.02284 -12.82284 -12.78234 -12.68396 -12.35875 -12.12979 -12.02908 -11.87039 -11.31242 -11.17782 -11.04173 -10.95829 -10.54036 -10.24676 -10.11758 -9.88947 -9.01331 -8.52107 -6.23192 0.94857 1.18654 1.30701 1.41369 1.45465 1.50367 1.53465 1.83224 2.23888 2.28049 2.46893 2.67384 2.85940 3.22278 3.32304 3.48985 3.71962 3.83607 3.94594 4.00460 4.01695 4.12746 4.16106 4.30515 4.37279 4.42656 4.48747 4.55229 4.67832 4.78916 4.80408 4.88119 4.97385 4.99687 5.13976 5.26064 5.34865 5.50666 5.70220 5.72464 5.91511 6.10712 6.16335 6.35953 6.92880 7.01252 7.05032 7.12648 8.60188 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002088 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.542734 B =13408.633295 C =14327.479785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.601 5.601 4 C 0.113 3.887 5 C 0.113 3.887 6 N -0.707 5.707 7 C 0.524 3.476 8 O -0.572 6.572 9 C -0.147 4.147 10 H 0.164 0.836 11 C -0.118 4.118 12 C 0.102 3.898 13 N -0.717 5.717 14 C 0.524 3.476 15 O -0.561 6.561 16 C 0.535 3.465 17 O -0.556 6.556 18 C -0.107 4.107 19 S -0.177 6.177 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.237 1.237 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.422 0.578 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 2.330 34.909 35.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.335 5.335 4 C -0.010 4.010 5 C -0.013 4.013 6 N -0.359 5.359 7 C 0.310 3.690 8 O -0.452 6.452 9 C -0.171 4.171 10 H 0.181 0.819 11 C -0.157 4.157 12 C -0.022 4.022 13 N -0.372 5.372 14 C 0.308 3.692 15 O -0.440 6.440 16 C 0.322 3.678 17 O -0.434 6.434 18 C -0.257 4.257 19 S 0.050 5.950 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.553 5.553 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.161 1.161 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.594 3.399 34.200 34.996 hybrid contribution -0.791 -1.006 -0.519 1.381 sum 5.803 2.393 33.681 34.261 Atomic orbital electron populations 1.22187 0.94623 1.03610 1.02236 1.21932 0.95501 0.80223 1.04948 1.47833 1.65735 1.15647 1.04275 1.21559 0.94826 0.99275 0.85349 1.21548 0.97322 0.97392 0.84994 1.45740 1.13754 1.53042 1.23336 1.20403 0.81860 0.80410 0.86326 1.90718 1.44814 1.43658 1.65962 1.22241 0.99912 1.04126 0.90787 0.81901 1.22692 0.92411 1.05710 0.94838 1.22392 0.81571 1.02877 0.95311 1.46163 1.12890 1.63266 1.14847 1.20478 0.86225 0.77393 0.85061 1.90767 1.16379 1.53763 1.83083 1.20056 0.76432 0.85950 0.85364 1.90682 1.46206 1.19122 1.87388 1.23311 1.06544 1.02276 0.93599 1.84696 1.88460 1.22910 0.98949 1.22431 1.51215 1.01428 0.92438 0.91926 1.25560 0.94005 1.01659 0.94776 1.70011 1.47721 1.38089 0.99508 0.85872 0.79875 0.80543 0.80113 1.18800 1.18215 1.16095 0.91366 0.93917 0.89400 0.89970 0.87446 0.86434 0.90041 0.93869 0.91334 0.74630 0.86242 0.90283 0.87795 0.87637 0.73717 0.87236 0.86976 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.24 71.98 0.74 -2.10 16 2 C 0.10 1.77 5.93 86.38 0.51 2.29 16 3 N -0.60 -15.17 2.47 -821.80 -2.03 -17.20 16 4 C 0.11 2.38 5.52 86.38 0.48 2.86 16 5 C 0.11 2.66 6.00 86.38 0.52 3.18 16 6 N -0.71 -14.28 5.29 -463.04 -2.45 -16.73 16 7 C 0.52 11.35 7.12 87.66 0.62 11.98 16 8 O -0.57 -16.89 15.49 -3.04 -0.05 -16.93 16 9 C -0.15 -1.82 3.32 -11.55 -0.04 -1.86 16 10 H 0.16 1.12 8.14 -2.38 -0.02 1.10 16 11 C -0.12 -0.93 6.48 31.65 0.21 -0.73 16 12 C 0.10 0.23 7.78 86.84 0.68 0.91 16 13 N -0.72 -5.43 6.24 -459.82 -2.87 -8.29 16 14 C 0.52 7.71 7.85 87.90 0.69 8.40 16 15 O -0.56 -12.31 17.17 -3.03 -0.05 -12.37 16 16 C 0.53 19.06 7.69 87.66 0.67 19.73 16 17 O -0.56 -24.05 15.44 -3.04 -0.05 -24.10 16 18 C -0.11 -4.16 4.71 71.24 0.34 -3.82 16 19 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 20 C -0.53 -31.05 10.04 67.96 0.68 -30.37 16 21 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 22 C 0.05 2.70 5.50 84.86 0.47 3.16 16 23 N -0.92 -56.09 13.97 21.65 0.30 -55.79 16 24 Si 0.91 45.54 27.74 68.60 1.90 47.44 16 25 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 28 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.04 0.91 7.22 -2.39 -0.02 0.89 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.62 6.44 -2.39 -0.02 1.61 16 32 H 0.11 1.44 8.07 -2.39 -0.02 1.43 16 33 H 0.12 1.71 8.07 -2.39 -0.02 1.69 16 34 H 0.08 1.94 7.42 -2.39 -0.02 1.92 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 6.71 8.00 -92.71 -0.74 5.97 16 38 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 1.06 7.00 -2.39 -0.02 1.04 16 40 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.42 2.00 8.96 -92.70 -0.83 1.17 16 43 H 0.11 3.99 7.40 -2.40 -0.02 3.98 16 44 H 0.11 4.06 7.18 -2.40 -0.02 4.04 16 45 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -85.97 388.73 -0.36 -86.32 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.58 Total: 14.17 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.56 Total: 13.63 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -7.05 Total: -98.01 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.15 Total: -53.40 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -85.97 -0.36 -86.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581150153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.458 kcal (2) G-P(sol) polarization free energy of solvation -85.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds