Wall clock time and date at job start Wed Apr 1 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47434 * 2 1 4 4 C 1.53002 * 109.47124 * 240.00669 * 2 1 3 5 5 N 1.46496 * 109.47425 * 65.00039 * 4 2 1 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46851 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99843 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46945 * 60.00520 * 14 12 10 16 16 H 1.48497 * 109.46774 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47349 * 299.99969 * 14 12 10 18 18 C 1.52999 * 109.47415 * 120.00694 * 2 1 3 19 19 N 1.46497 * 109.46923 * 294.99630 * 18 2 1 20 20 C 1.34777 * 119.99990 * 179.97438 * 19 18 2 21 21 O 1.21280 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00198 * 180.02562 * 20 19 18 23 23 H 1.09003 * 110.21480 * 318.07800 * 22 20 19 24 24 C 1.54482 * 110.24513 * 79.99877 * 22 20 19 25 25 C 1.54629 * 101.76342 * 93.58880 * 24 22 20 26 26 C 1.51283 * 104.19693 * 24.79462 * 25 24 22 27 27 O 1.21284 * 124.94412 * 163.70890 * 26 25 24 28 28 N 1.34417 * 110.11496 * 343.75387 * 26 25 24 29 29 H 1.09001 * 109.47279 * 299.99226 * 1 2 3 30 30 H 1.08997 * 109.47238 * 59.99267 * 1 2 3 31 31 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 304.99861 * 4 2 1 33 33 H 1.09000 * 109.47312 * 184.99805 * 4 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 36 36 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 37 37 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47427 * 54.99999 * 18 2 1 39 39 H 1.09000 * 109.47514 * 175.00126 * 18 2 1 40 40 H 0.97004 * 120.00026 * 0.02562 * 19 18 2 41 41 H 1.09002 * 110.97340 * 211.70445 * 24 22 20 42 42 H 1.09004 * 110.97115 * 335.47120 * 24 22 20 43 43 H 1.08996 * 110.49240 * 143.47503 * 25 24 22 44 44 H 1.09000 * 110.48450 * 266.12311 * 25 24 22 45 45 H 0.97004 * 124.35505 * 179.58694 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.6524 0.0356 -2.4424 6 6 1.9955 -0.4133 -3.6660 7 8 2.6208 -1.4461 -3.7798 8 6 1.5963 0.3649 -4.8933 9 16 2.1998 -0.4881 -6.3713 10 6 1.6104 0.6076 -7.6190 11 1 1.0577 1.4933 -7.3426 12 6 1.8557 0.3318 -8.9570 13 7 2.5281 -0.7485 -9.2939 14 14 1.2303 1.4931 -10.2798 15 1 1.8225 2.8396 -10.0767 16 1 1.6214 0.9774 -11.6163 17 1 -0.2496 1.5855 -10.1980 18 6 2.0400 -0.7214 1.2491 19 7 1.6525 0.0351 2.4423 20 6 1.9957 -0.4139 3.6659 21 8 2.6257 -1.4441 3.7791 22 6 1.5966 0.3640 4.8933 23 1 1.7407 1.4314 4.7261 24 6 0.1229 0.0737 5.2545 25 6 0.2696 -1.0784 6.2753 26 6 1.6599 -0.8963 6.8431 27 8 2.0665 -1.4108 7.8634 28 7 2.3788 -0.0805 6.0529 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7993 -1.2057 34 1 1.1482 0.8592 -2.3517 35 1 0.5100 0.4431 -4.9366 36 1 2.0309 1.3635 -4.8476 37 1 2.6992 -0.9414 -10.2290 38 1 1.6054 -1.7200 1.2950 39 1 3.1263 -0.7996 1.2055 40 1 1.1483 0.8589 2.3518 41 1 -0.3450 0.9445 5.7137 42 1 -0.4370 -0.2511 4.3774 43 1 -0.4788 -0.9882 7.0626 44 1 0.1849 -2.0436 5.7760 45 1 3.2966 0.1810 6.2267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582822448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:07 Heat of formation + Delta-G solvation = -119.131991 kcal Electronic energy + Delta-G solvation = -26192.327387 eV Core-core repulsion = 22142.548470 eV Total energy + Delta-G solvation = -4049.778917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42395 -39.71953 -39.23238 -37.32100 -36.52750 -34.70601 -32.57713 -32.45297 -31.89332 -29.57155 -28.99617 -27.11765 -25.70711 -25.27316 -23.34005 -21.28384 -21.13345 -20.72790 -20.43362 -18.30056 -18.06999 -17.80372 -16.86526 -16.35721 -16.15173 -16.05635 -15.69164 -15.38607 -15.13081 -14.83091 -14.70532 -14.30531 -14.14269 -13.99929 -13.85481 -13.78044 -13.36962 -13.21500 -13.07838 -12.98994 -12.59619 -12.20776 -11.98923 -11.96878 -11.68058 -11.47620 -11.33965 -11.07683 -11.06447 -10.81804 -10.78863 -10.38952 -9.85838 -9.63893 -9.63328 -9.46609 -9.09497 -8.96643 -8.27479 -6.53485 -6.24273 -3.95414 1.94428 2.04429 2.41445 2.85655 3.02332 3.04175 3.20960 3.25419 3.28543 3.65291 3.66622 3.74625 3.97095 4.14766 4.17628 4.32196 4.35273 4.41716 4.44489 4.67667 4.92831 4.98745 5.07746 5.10695 5.10784 5.18747 5.20659 5.25913 5.34910 5.45372 5.55711 5.59961 5.77266 5.80635 5.83915 5.88769 6.08501 6.14390 6.43609 6.51956 6.86495 7.56039 7.59687 7.62140 7.72702 8.31891 8.54967 9.20781 10.83062 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.001408 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.579120 B =19877.135001 C =20202.956169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.538 4.538 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.125 3.875 19 N -0.724 5.724 20 C 0.496 3.504 21 O -0.522 6.522 22 C 0.114 3.886 23 H 0.115 0.885 24 C -0.120 4.120 25 C -0.158 4.158 26 C 0.528 3.472 27 O -0.529 6.529 28 N -0.710 5.710 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 8.406 29.438 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.104 0.896 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.686 4.686 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.377 5.377 20 C 0.279 3.721 21 O -0.396 6.396 22 C 0.004 3.996 23 H 0.133 0.867 24 C -0.159 4.159 25 C -0.198 4.198 26 C 0.314 3.686 27 O -0.404 6.404 28 N -0.366 5.366 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.453 5.463 29.718 30.897 hybrid contribution -1.134 2.915 -0.900 3.255 sum -7.588 8.378 28.818 30.955 Atomic orbital electron populations 1.21899 0.93918 1.02945 1.02022 1.21594 0.97160 1.00744 0.93867 0.89645 1.21163 1.00319 0.95441 0.82759 1.45960 1.59774 1.28144 1.05462 1.20318 0.78656 0.85529 0.83770 1.90715 1.38448 1.23640 1.86150 1.23530 1.04777 1.03452 0.98643 1.85427 1.72797 1.32951 0.92139 1.22824 1.41675 1.11282 0.92802 0.90976 1.24989 0.94820 0.95779 0.97920 1.70001 1.37383 1.24536 1.18308 0.86226 0.79176 0.80331 0.79774 1.19949 1.20788 1.19939 1.21344 1.00716 0.95434 0.82377 1.45965 1.58057 1.28017 1.05660 1.21026 0.80000 0.86294 0.84744 1.90787 1.38649 1.23799 1.86392 1.21558 0.93343 0.99563 0.85179 0.86727 1.22612 0.92884 0.99779 1.00583 1.22376 0.95990 1.01031 1.00443 1.20818 0.88190 0.76823 0.82753 1.90781 1.76148 1.49148 1.24341 1.45881 1.16788 1.50485 1.23407 0.92508 0.91800 0.91870 0.91149 0.91256 0.76851 0.89226 0.89251 0.92089 0.90663 0.90748 0.76333 0.88317 0.88506 0.87382 0.87353 0.74569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.94 37.15 0.33 -0.32 16 2 C -0.11 -0.60 2.46 -90.62 -0.22 -0.82 16 3 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 4 C 0.13 1.22 5.06 -4.04 -0.02 1.20 16 5 N -0.74 -8.45 5.28 -60.29 -0.32 -8.77 16 6 C 0.53 9.30 7.85 -10.98 -0.09 9.22 16 7 O -0.52 -11.33 15.86 5.56 0.09 -11.25 16 8 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 11 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 14 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C 0.13 0.74 5.06 -4.04 -0.02 0.72 16 19 N -0.72 -2.80 5.28 -60.30 -0.32 -3.12 16 20 C 0.50 3.06 7.01 -10.98 -0.08 2.99 16 21 O -0.52 -5.95 16.56 5.56 0.09 -5.86 16 22 C 0.11 0.36 3.93 -68.16 -0.27 0.09 16 23 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 24 C -0.12 -0.19 6.69 -25.10 -0.17 -0.36 16 25 C -0.16 -0.73 6.85 -26.74 -0.18 -0.91 16 26 C 0.53 4.54 8.43 -10.86 -0.09 4.45 16 27 O -0.53 -7.00 18.03 5.55 0.10 -6.90 16 28 N -0.71 -4.32 5.45 -53.88 -0.29 -4.61 16 29 H 0.06 0.13 7.18 -51.93 -0.37 -0.24 16 30 H 0.06 0.31 7.18 -51.93 -0.37 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.29 7.65 -40.82 -0.31 2.98 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 0.31 7.65 -40.82 -0.31 0.00 16 41 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 42 H 0.10 0.06 7.89 -51.93 -0.41 -0.35 16 43 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.41 2.28 8.96 -40.82 -0.37 1.92 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -40.65 394.91 -8.35 -49.00 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.76 Total: -2.30 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.39 Total: 0.80 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.20 Total: -41.61 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.28 Total: -24.01 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.65 -8.35 -49.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582822448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.133 kcal (2) G-P(sol) polarization free energy of solvation -40.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds