Wall clock time and date at job start Wed Apr 1 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47434 * 2 1 4 4 C 1.53002 * 109.47124 * 240.00669 * 2 1 3 5 5 N 1.46496 * 109.47425 * 65.00039 * 4 2 1 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46851 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99843 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46945 * 60.00520 * 14 12 10 16 16 H 1.48497 * 109.46774 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47349 * 299.99969 * 14 12 10 18 18 C 1.52999 * 109.47415 * 120.00694 * 2 1 3 19 19 N 1.46497 * 109.46923 * 294.99630 * 18 2 1 20 20 C 1.34777 * 119.99990 * 179.97438 * 19 18 2 21 21 O 1.21280 * 120.00084 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00198 * 180.02562 * 20 19 18 23 23 H 1.09003 * 110.21480 * 318.07800 * 22 20 19 24 24 C 1.54482 * 110.24513 * 79.99877 * 22 20 19 25 25 C 1.54629 * 101.76342 * 93.58880 * 24 22 20 26 26 C 1.51283 * 104.19693 * 24.79462 * 25 24 22 27 27 O 1.21284 * 124.94412 * 163.70890 * 26 25 24 28 28 N 1.34417 * 110.11496 * 343.75387 * 26 25 24 29 29 H 1.09001 * 109.47279 * 299.99226 * 1 2 3 30 30 H 1.08997 * 109.47238 * 59.99267 * 1 2 3 31 31 H 1.09005 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 304.99861 * 4 2 1 33 33 H 1.09000 * 109.47312 * 184.99805 * 4 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 36 36 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 37 37 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47427 * 54.99999 * 18 2 1 39 39 H 1.09000 * 109.47514 * 175.00126 * 18 2 1 40 40 H 0.97004 * 120.00026 * 0.02562 * 19 18 2 41 41 H 1.09002 * 110.97340 * 211.70445 * 24 22 20 42 42 H 1.09004 * 110.97115 * 335.47120 * 24 22 20 43 43 H 1.08996 * 110.49240 * 143.47503 * 25 24 22 44 44 H 1.09000 * 110.48450 * 266.12311 * 25 24 22 45 45 H 0.97004 * 124.35505 * 179.58694 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.6524 0.0356 -2.4424 6 6 1.9955 -0.4133 -3.6660 7 8 2.6208 -1.4461 -3.7798 8 6 1.5963 0.3649 -4.8933 9 16 2.1998 -0.4881 -6.3713 10 6 1.6104 0.6076 -7.6190 11 1 1.0577 1.4933 -7.3426 12 6 1.8557 0.3318 -8.9570 13 7 2.5281 -0.7485 -9.2939 14 14 1.2303 1.4931 -10.2798 15 1 1.8225 2.8396 -10.0767 16 1 1.6214 0.9774 -11.6163 17 1 -0.2496 1.5855 -10.1980 18 6 2.0400 -0.7214 1.2491 19 7 1.6525 0.0351 2.4423 20 6 1.9957 -0.4139 3.6659 21 8 2.6257 -1.4441 3.7791 22 6 1.5966 0.3640 4.8933 23 1 1.7407 1.4314 4.7261 24 6 0.1229 0.0737 5.2545 25 6 0.2696 -1.0784 6.2753 26 6 1.6599 -0.8963 6.8431 27 8 2.0665 -1.4108 7.8634 28 7 2.3788 -0.0805 6.0529 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7993 -1.2057 34 1 1.1482 0.8592 -2.3517 35 1 0.5100 0.4431 -4.9366 36 1 2.0309 1.3635 -4.8476 37 1 2.6992 -0.9414 -10.2290 38 1 1.6054 -1.7200 1.2950 39 1 3.1263 -0.7996 1.2055 40 1 1.1483 0.8589 2.3518 41 1 -0.3450 0.9445 5.7137 42 1 -0.4370 -0.2511 4.3774 43 1 -0.4788 -0.9882 7.0626 44 1 0.1849 -2.0436 5.7760 45 1 3.2966 0.1810 6.2267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582822448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:06 Heat of formation + Delta-G solvation = -153.991496 kcal Electronic energy + Delta-G solvation = -26193.839008 eV Core-core repulsion = 22142.548470 eV Total energy + Delta-G solvation = -4051.290539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89661 -40.71683 -40.11025 -38.06517 -37.16031 -35.57014 -34.56914 -33.41790 -32.25547 -30.87208 -29.50190 -27.78375 -27.52572 -26.20598 -23.69520 -21.87050 -21.69878 -21.61730 -21.21913 -19.81567 -18.72084 -18.53643 -17.71501 -17.60694 -16.87375 -16.85034 -16.80084 -16.46737 -16.30279 -15.90741 -15.57461 -15.46842 -14.84605 -14.77319 -14.68446 -14.43410 -14.29811 -14.20844 -13.87684 -13.66936 -13.51965 -13.30771 -13.15403 -12.84789 -12.62528 -12.46422 -12.25516 -12.15041 -12.11370 -11.82041 -11.72610 -11.40608 -11.11293 -11.04647 -10.96025 -10.25470 -10.14390 -10.13675 -10.08713 -8.65433 -8.32929 -6.11310 1.28268 1.40872 1.45393 1.48972 1.53028 1.58040 1.63795 1.96538 2.28325 2.32527 2.52063 3.01341 3.31351 3.34141 3.49648 3.64481 3.81298 3.83203 3.89933 3.95188 4.06666 4.24692 4.32987 4.44165 4.46719 4.52389 4.53768 4.77515 4.79844 4.81989 4.91655 4.95653 5.03103 5.06825 5.20196 5.35122 5.43007 5.43988 5.49510 5.70059 5.90986 6.21014 6.51983 6.54856 7.08311 7.12586 7.24006 7.28075 8.75952 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.001408 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.579120 B =19877.135001 C =20202.956169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.111 0.889 4 C 0.124 3.876 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.569 6.569 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.547 4.547 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.261 1.261 18 C 0.129 3.871 19 N -0.702 5.702 20 C 0.494 3.506 21 O -0.583 6.583 22 C 0.116 3.884 23 H 0.162 0.838 24 C -0.107 4.107 25 C -0.158 4.158 26 C 0.512 3.488 27 O -0.590 6.590 28 N -0.708 5.708 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.423 0.577 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 12.466 29.935 34.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.129 0.871 4 C -0.001 4.001 5 N -0.361 5.361 6 C 0.317 3.683 7 O -0.448 6.448 8 C -0.279 4.279 9 S 0.070 5.930 10 C -0.694 4.694 11 H 0.103 0.897 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.186 1.186 18 C 0.004 3.996 19 N -0.356 5.356 20 C 0.279 3.721 21 O -0.462 6.462 22 C 0.007 3.993 23 H 0.179 0.821 24 C -0.145 4.145 25 C -0.198 4.198 26 C 0.300 3.700 27 O -0.471 6.471 28 N -0.361 5.361 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.117 0.883 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -9.231 9.635 30.218 33.033 hybrid contribution -0.275 1.656 -0.951 1.929 sum -9.506 11.291 29.266 32.778 Atomic orbital electron populations 1.21933 0.92538 1.02650 1.03691 1.21425 0.97998 1.01028 0.90815 0.87111 1.21306 0.99695 0.95394 0.83690 1.45631 1.58058 1.28433 1.04020 1.20096 0.78416 0.84725 0.85030 1.90706 1.41186 1.25930 1.86969 1.23368 1.05826 1.03344 0.95410 1.85647 1.74350 1.35992 0.97041 1.23185 1.41554 1.11440 0.93251 0.89692 1.26132 0.94794 0.97527 1.00687 1.70180 1.39032 1.26830 1.18827 0.85006 0.79025 0.77972 0.76007 1.18591 1.20623 1.18554 1.21143 0.99613 0.95320 0.83557 1.45731 1.57304 1.28250 1.04341 1.21644 0.78864 0.85575 0.85986 1.90779 1.41569 1.26622 1.87240 1.21916 0.93849 1.01174 0.82403 0.82090 1.22750 0.91807 0.99569 1.00341 1.22429 0.93696 1.02095 1.01624 1.21614 0.89980 0.76200 0.82189 1.90732 1.77681 1.51550 1.27127 1.46039 1.16987 1.49383 1.23711 0.89363 0.91618 0.93238 0.92612 0.92624 0.74369 0.86963 0.87011 0.92056 0.92221 0.92566 0.73852 0.84951 0.86733 0.85947 0.88342 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.94 71.98 0.64 -0.07 16 2 C -0.09 -0.69 2.46 -10.80 -0.03 -0.72 16 3 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 4 C 0.12 2.21 5.06 86.38 0.44 2.65 16 5 N -0.71 -14.62 5.28 -463.06 -2.45 -17.06 16 6 C 0.53 18.22 7.85 87.66 0.69 18.91 16 7 O -0.57 -25.71 15.86 -3.01 -0.05 -25.76 16 8 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 9 S -0.16 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.55 -30.47 9.50 67.96 0.65 -29.82 16 11 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 12 C 0.01 0.75 5.49 84.86 0.47 1.21 16 13 N -0.91 -55.53 13.22 21.65 0.29 -55.24 16 14 Si 1.00 42.54 29.55 68.60 2.03 44.56 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 18 C 0.13 1.32 5.06 86.38 0.44 1.75 16 19 N -0.70 -3.16 5.28 -463.07 -2.45 -5.61 16 20 C 0.49 5.09 7.01 87.66 0.61 5.70 16 21 O -0.58 -13.41 16.56 -3.03 -0.05 -13.47 16 22 C 0.12 0.35 3.93 44.70 0.18 0.52 16 23 H 0.16 -0.92 8.14 -2.39 -0.02 -0.94 16 24 C -0.11 0.11 6.69 31.65 0.21 0.32 16 25 C -0.16 -1.24 6.85 30.59 0.21 -1.03 16 26 C 0.51 8.90 8.43 87.90 0.74 9.64 16 27 O -0.59 -16.72 18.03 -3.04 -0.05 -16.77 16 28 N -0.71 -7.94 5.45 -442.97 -2.41 -10.35 16 29 H 0.09 -0.10 7.18 -2.39 -0.02 -0.11 16 30 H 0.06 0.34 7.18 -2.39 -0.02 0.32 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.42 5.26 7.65 -92.71 -0.71 4.55 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.42 -1.60 7.65 -92.71 -0.71 -2.30 16 41 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H 0.11 -0.44 7.89 -2.38 -0.02 -0.46 16 43 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.41 4.46 8.96 -92.71 -0.83 3.63 16 Total: -1.00 -97.33 394.91 -1.84 -99.17 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -1.21 Total: 5.49 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.68 Total: 4.76 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -7.02 Total: -88.27 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.15 Total: -55.99 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -97.33 -1.84 -99.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582822448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.821 kcal (2) G-P(sol) polarization free energy of solvation -97.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds