Wall clock time and date at job start Wed Apr 1 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47729 * 2 1 4 4 C 1.53005 * 109.46818 * 119.99969 * 2 1 3 5 5 N 1.46494 * 109.47109 * 294.99575 * 4 2 1 6 6 C 1.34780 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99706 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00154 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47232 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00082 * 179.97438 * 9 8 6 11 11 H 1.08008 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00162 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00034 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00280 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47037 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47386 * 119.99803 * 14 12 10 17 17 H 1.48496 * 109.47093 * 240.00049 * 14 12 10 18 18 C 1.53000 * 109.47086 * 239.99570 * 2 1 3 19 19 N 1.46505 * 109.47125 * 65.00296 * 18 2 1 20 20 C 1.34775 * 119.99967 * 180.02562 * 19 18 2 21 21 O 1.21272 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99574 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.29038 * 318.02550 * 22 20 19 24 24 C 1.54487 * 110.24496 * 80.00401 * 22 20 19 25 25 C 1.54619 * 101.76557 * 93.58162 * 24 22 20 26 26 C 1.51281 * 104.19775 * 24.79876 * 25 24 22 27 27 O 1.21283 * 124.94320 * 163.71594 * 26 25 24 28 28 N 1.34413 * 110.11648 * 343.74848 * 26 25 24 29 29 H 1.09008 * 109.46679 * 300.00488 * 1 2 3 30 30 H 1.09000 * 109.46680 * 59.99803 * 1 2 3 31 31 H 1.08996 * 109.47729 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47079 * 54.99922 * 4 2 1 33 33 H 1.09007 * 109.46896 * 174.99640 * 4 2 1 34 34 H 0.97003 * 120.00236 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47189 * 299.99425 * 8 6 5 36 36 H 1.09001 * 109.47528 * 59.99069 * 8 6 5 37 37 H 0.97003 * 120.00318 * 180.02562 * 13 12 10 38 38 H 1.09009 * 109.47329 * 305.00341 * 18 2 1 39 39 H 1.08998 * 109.47323 * 185.00099 * 18 2 1 40 40 H 0.97006 * 119.99401 * 0.02562 * 19 18 2 41 41 H 1.08996 * 110.96729 * 211.70116 * 24 22 20 42 42 H 1.08999 * 110.96649 * 335.46360 * 24 22 20 43 43 H 1.09007 * 110.48907 * 143.47513 * 25 24 22 44 44 H 1.09005 * 110.49113 * 266.11989 * 25 24 22 45 45 H 0.96997 * 124.35521 * 179.59670 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9964 -0.4130 3.6659 7 8 2.6263 -1.4432 3.7792 8 6 1.5973 0.3650 4.8933 9 16 2.2006 -0.4882 6.3712 10 6 1.6114 0.6074 7.6190 11 1 1.0586 1.4932 7.3427 12 6 1.8565 0.3315 8.9570 13 7 2.5289 -0.7488 9.2937 14 14 1.2312 1.4927 10.2799 15 1 0.5087 2.6239 9.6445 16 1 0.3075 0.7615 11.1840 17 1 2.3796 2.0154 11.0628 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 1.9956 -0.4138 -3.6660 21 8 2.6247 -1.4444 -3.7792 22 6 1.5964 0.3642 -4.8933 23 1 0.5723 0.7247 -4.7958 24 6 2.5621 1.5500 -5.1121 25 6 3.5996 0.9371 -6.0809 26 6 2.8471 -0.1774 -6.7739 27 8 3.2016 -0.7235 -7.7971 28 7 1.7280 -0.4739 -6.0910 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2056 34 1 1.1489 0.8595 2.3517 35 1 2.0313 1.3638 4.8473 36 1 0.5109 0.4426 4.9370 37 1 2.6999 -0.9419 10.2289 38 1 1.6053 -1.7200 -1.2951 39 1 3.1262 -0.7996 -1.2056 40 1 1.1489 0.8594 -2.3517 41 1 2.0471 2.3923 -5.5739 42 1 3.0321 1.8483 -4.1749 43 1 3.9315 1.6811 -6.8051 44 1 4.4490 0.5370 -5.5271 45 1 1.0893 -1.1543 -6.3555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582822449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:10 Heat of formation + Delta-G solvation = -119.224890 kcal Electronic energy + Delta-G solvation = -26181.340186 eV Core-core repulsion = 22131.557241 eV Total energy + Delta-G solvation = -4049.782945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42270 -39.71933 -39.23205 -37.32099 -36.52549 -34.70577 -32.57895 -32.45598 -31.88782 -29.57187 -28.99357 -27.12074 -25.70890 -25.27340 -23.33495 -21.26857 -21.14600 -20.73558 -20.43418 -18.28585 -18.07674 -17.79784 -16.84521 -16.40680 -16.25264 -15.87704 -15.77297 -15.33120 -15.16137 -14.83512 -14.67131 -14.31089 -14.17780 -14.02232 -13.87786 -13.70723 -13.36949 -13.21566 -13.08506 -12.99374 -12.60090 -12.20257 -11.99392 -11.95382 -11.68351 -11.47476 -11.33980 -11.09884 -11.05326 -10.81637 -10.78125 -10.38659 -9.84231 -9.64307 -9.62922 -9.46692 -9.11192 -8.96748 -8.26774 -6.53646 -6.24937 -3.95796 1.94424 2.04673 2.41559 2.85648 3.02308 3.04076 3.18945 3.25797 3.29934 3.65393 3.66900 3.75086 3.97466 4.14785 4.17034 4.32115 4.35489 4.41683 4.44650 4.68057 4.92822 4.99672 5.07729 5.10410 5.11421 5.18704 5.21412 5.25912 5.35098 5.45385 5.55571 5.59962 5.77329 5.80586 5.83835 5.88743 6.08463 6.14495 6.43619 6.51934 6.86512 7.56377 7.59708 7.62091 7.72868 8.31964 8.54920 9.20513 10.82528 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.001414 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.193711 B =19792.460331 C =19993.433333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 H 0.086 0.914 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.125 3.875 19 N -0.724 5.724 20 C 0.496 3.504 21 O -0.522 6.522 22 C 0.114 3.886 23 H 0.115 0.885 24 C -0.121 4.121 25 C -0.158 4.158 26 C 0.528 3.472 27 O -0.529 6.529 28 N -0.710 5.710 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.402 0.598 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 9.666 -29.332 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 H 0.104 0.896 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.001 3.999 19 N -0.377 5.377 20 C 0.280 3.720 21 O -0.396 6.396 22 C 0.004 3.996 23 H 0.133 0.867 24 C -0.159 4.159 25 C -0.199 4.199 26 C 0.314 3.686 27 O -0.404 6.404 28 N -0.366 5.366 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.222 6.840 -29.610 30.681 hybrid contribution -1.991 2.375 0.858 3.216 sum -6.213 9.215 -28.751 30.824 Atomic orbital electron populations 1.21900 0.93954 1.02934 1.02006 1.21595 0.97132 1.00749 0.93867 0.89606 1.21163 1.00326 0.95434 0.82756 1.45960 1.59805 1.28111 1.05461 1.20317 0.78686 0.85497 0.83773 1.90717 1.38261 1.23820 1.86158 1.23525 1.04786 1.03444 0.98633 1.85434 1.72812 1.32967 0.92178 1.22905 1.41499 1.11245 0.92775 0.90873 1.24994 0.94839 0.95790 0.97951 1.70027 1.37527 1.24556 1.18119 0.86115 0.78586 0.80114 0.80656 1.19632 1.20560 1.20550 1.21347 1.00722 0.95430 0.82379 1.45967 1.58105 1.27954 1.05678 1.21018 0.80064 0.86203 0.84763 1.90785 1.38598 1.23859 1.86379 1.21562 1.02493 0.91161 0.84420 0.86740 1.22612 0.95832 0.95931 1.01497 1.22378 0.99409 0.98055 1.00011 1.20819 0.80715 0.83683 0.83362 1.90780 1.69578 1.56206 1.23852 1.45882 1.26029 1.40485 1.24180 0.91786 0.92547 0.91904 0.91172 0.91228 0.76849 0.89231 0.89238 0.92202 0.90706 0.90700 0.76333 0.88314 0.88491 0.87373 0.87335 0.74588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.94 37.16 0.33 -0.35 16 2 C -0.11 -0.59 2.46 -90.62 -0.22 -0.82 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 4 C 0.13 1.22 5.06 -4.04 -0.02 1.20 16 5 N -0.74 -8.43 5.28 -60.29 -0.32 -8.75 16 6 C 0.53 9.29 7.85 -10.99 -0.09 9.21 16 7 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 8 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 11 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 14 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.13 0.74 5.06 -4.04 -0.02 0.72 16 19 N -0.72 -2.80 5.28 -60.29 -0.32 -3.12 16 20 C 0.50 3.06 7.01 -10.99 -0.08 2.99 16 21 O -0.52 -5.95 16.56 5.56 0.09 -5.86 16 22 C 0.11 0.36 3.93 -68.16 -0.27 0.09 16 23 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 24 C -0.12 -0.20 6.69 -25.10 -0.17 -0.37 16 25 C -0.16 -0.75 6.85 -26.75 -0.18 -0.93 16 26 C 0.53 4.56 8.43 -10.86 -0.09 4.47 16 27 O -0.53 -7.02 18.03 5.56 0.10 -6.92 16 28 N -0.71 -4.30 5.45 -53.88 -0.29 -4.60 16 29 H 0.06 0.32 7.18 -51.92 -0.37 -0.06 16 30 H 0.06 0.15 7.18 -51.93 -0.37 -0.23 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.28 7.66 -40.82 -0.31 2.97 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 36 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 0.32 7.66 -40.82 -0.31 0.00 16 41 H 0.10 -0.03 8.14 -51.93 -0.42 -0.46 16 42 H 0.10 0.07 7.89 -51.93 -0.41 -0.34 16 43 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.41 2.25 8.96 -40.82 -0.37 1.89 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -40.67 394.91 -8.35 -49.03 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.76 Total: -2.33 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.39 Total: 0.78 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.20 Total: -41.58 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.28 Total: -24.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.67 -8.35 -49.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582822449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.200 kcal (2) G-P(sol) polarization free energy of solvation -40.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds