Wall clock time and date at job start Wed Apr 1 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47729 * 2 1 4 4 C 1.53005 * 109.46818 * 119.99969 * 2 1 3 5 5 N 1.46494 * 109.47109 * 294.99575 * 4 2 1 6 6 C 1.34780 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99706 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00154 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47232 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00082 * 179.97438 * 9 8 6 11 11 H 1.08008 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00162 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00034 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00280 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47037 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47386 * 119.99803 * 14 12 10 17 17 H 1.48496 * 109.47093 * 240.00049 * 14 12 10 18 18 C 1.53000 * 109.47086 * 239.99570 * 2 1 3 19 19 N 1.46505 * 109.47125 * 65.00296 * 18 2 1 20 20 C 1.34775 * 119.99967 * 180.02562 * 19 18 2 21 21 O 1.21272 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99574 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.29038 * 318.02550 * 22 20 19 24 24 C 1.54487 * 110.24496 * 80.00401 * 22 20 19 25 25 C 1.54619 * 101.76557 * 93.58162 * 24 22 20 26 26 C 1.51281 * 104.19775 * 24.79876 * 25 24 22 27 27 O 1.21283 * 124.94320 * 163.71594 * 26 25 24 28 28 N 1.34413 * 110.11648 * 343.74848 * 26 25 24 29 29 H 1.09008 * 109.46679 * 300.00488 * 1 2 3 30 30 H 1.09000 * 109.46680 * 59.99803 * 1 2 3 31 31 H 1.08996 * 109.47729 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47079 * 54.99922 * 4 2 1 33 33 H 1.09007 * 109.46896 * 174.99640 * 4 2 1 34 34 H 0.97003 * 120.00236 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.47189 * 299.99425 * 8 6 5 36 36 H 1.09001 * 109.47528 * 59.99069 * 8 6 5 37 37 H 0.97003 * 120.00318 * 180.02562 * 13 12 10 38 38 H 1.09009 * 109.47329 * 305.00341 * 18 2 1 39 39 H 1.08998 * 109.47323 * 185.00099 * 18 2 1 40 40 H 0.97006 * 119.99401 * 0.02562 * 19 18 2 41 41 H 1.08996 * 110.96729 * 211.70116 * 24 22 20 42 42 H 1.08999 * 110.96649 * 335.46360 * 24 22 20 43 43 H 1.09007 * 110.48907 * 143.47513 * 25 24 22 44 44 H 1.09005 * 110.49113 * 266.11989 * 25 24 22 45 45 H 0.96997 * 124.35521 * 179.59670 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9964 -0.4130 3.6659 7 8 2.6263 -1.4432 3.7792 8 6 1.5973 0.3650 4.8933 9 16 2.2006 -0.4882 6.3712 10 6 1.6114 0.6074 7.6190 11 1 1.0586 1.4932 7.3427 12 6 1.8565 0.3315 8.9570 13 7 2.5289 -0.7488 9.2937 14 14 1.2312 1.4927 10.2799 15 1 0.5087 2.6239 9.6445 16 1 0.3075 0.7615 11.1840 17 1 2.3796 2.0154 11.0628 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 1.9956 -0.4138 -3.6660 21 8 2.6247 -1.4444 -3.7792 22 6 1.5964 0.3642 -4.8933 23 1 0.5723 0.7247 -4.7958 24 6 2.5621 1.5500 -5.1121 25 6 3.5996 0.9371 -6.0809 26 6 2.8471 -0.1774 -6.7739 27 8 3.2016 -0.7235 -7.7971 28 7 1.7280 -0.4739 -6.0910 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2056 34 1 1.1489 0.8595 2.3517 35 1 2.0313 1.3638 4.8473 36 1 0.5109 0.4426 4.9370 37 1 2.6999 -0.9419 10.2289 38 1 1.6053 -1.7200 -1.2951 39 1 3.1262 -0.7996 -1.2056 40 1 1.1489 0.8594 -2.3517 41 1 2.0471 2.3923 -5.5739 42 1 3.0321 1.8483 -4.1749 43 1 3.9315 1.6811 -6.8051 44 1 4.4490 0.5370 -5.5271 45 1 1.0893 -1.1543 -6.3555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582822449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:09 Heat of formation + Delta-G solvation = -154.090265 kcal Electronic energy + Delta-G solvation = -26182.852062 eV Core-core repulsion = 22131.557241 eV Total energy + Delta-G solvation = -4051.294821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89770 -40.71486 -40.11120 -38.06689 -37.16087 -35.56874 -34.57162 -33.42022 -32.25612 -30.87190 -29.50338 -27.79208 -27.53576 -26.20427 -23.69327 -21.86044 -21.70867 -21.61939 -21.22821 -19.81974 -18.71604 -18.53135 -17.71417 -17.59187 -16.91187 -16.87062 -16.78520 -16.53435 -16.16927 -15.98110 -15.56618 -15.44075 -14.85557 -14.77066 -14.66401 -14.48209 -14.35614 -14.13182 -13.89637 -13.65262 -13.55037 -13.30914 -13.14381 -12.90391 -12.59245 -12.46399 -12.25426 -12.16168 -12.11498 -11.82729 -11.68999 -11.40731 -11.14808 -11.04624 -10.95952 -10.24659 -10.14904 -10.13039 -10.08665 -8.65431 -8.33555 -6.11576 1.28457 1.40768 1.42754 1.49303 1.53042 1.59505 1.63967 1.96546 2.27754 2.32498 2.52089 3.01040 3.31243 3.34021 3.49464 3.64464 3.80861 3.83150 3.89380 3.95053 4.06712 4.24395 4.33119 4.44007 4.46504 4.52708 4.53979 4.77309 4.79757 4.80772 4.91457 4.95542 5.01219 5.06502 5.19750 5.34361 5.43365 5.43839 5.48673 5.70080 5.90905 6.21290 6.52051 6.54960 7.08115 7.12622 7.23992 7.28284 8.75876 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.001414 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.193711 B =19792.460331 C =19993.433333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.114 0.886 4 C 0.124 3.876 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.570 6.570 8 C -0.128 4.128 9 S -0.158 6.158 10 C -0.544 4.544 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.913 5.913 14 Si 0.999 3.001 15 H -0.254 1.254 16 H -0.276 1.276 17 H -0.275 1.275 18 C 0.129 3.871 19 N -0.702 5.702 20 C 0.494 3.506 21 O -0.583 6.583 22 C 0.116 3.884 23 H 0.163 0.837 24 C -0.107 4.107 25 C -0.159 4.159 26 C 0.512 3.488 27 O -0.590 6.590 28 N -0.708 5.708 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.270 0.730 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.423 0.577 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 13.896 -29.817 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.132 0.868 4 C -0.001 4.001 5 N -0.361 5.361 6 C 0.317 3.683 7 O -0.448 6.448 8 C -0.279 4.279 9 S 0.069 5.931 10 C -0.692 4.692 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.178 1.178 16 H -0.201 1.201 17 H -0.201 1.201 18 C 0.004 3.996 19 N -0.356 5.356 20 C 0.279 3.721 21 O -0.462 6.462 22 C 0.007 3.993 23 H 0.180 0.820 24 C -0.145 4.145 25 C -0.199 4.199 26 C 0.300 3.700 27 O -0.471 6.471 28 N -0.361 5.361 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.261 0.739 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.116 0.884 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.709 11.170 -30.098 32.797 hybrid contribution -1.273 1.035 0.906 1.874 sum -7.982 12.206 -29.192 32.632 Atomic orbital electron populations 1.21932 0.92797 1.02498 1.03615 1.21425 0.97776 1.01181 0.90829 0.86824 1.21305 0.99775 0.95324 0.83671 1.45631 1.58091 1.28400 1.04016 1.20094 0.78445 0.84691 0.85031 1.90708 1.41003 1.26109 1.86977 1.23364 1.05811 1.03363 0.95400 1.85654 1.74354 1.36005 0.97070 1.23248 1.41364 1.11360 0.93222 0.89690 1.26133 0.94825 0.97536 1.00710 1.70197 1.39150 1.26838 1.18737 0.84900 0.78046 0.77919 0.77043 1.17782 1.20107 1.20068 1.21148 0.99763 0.95181 0.83554 1.45734 1.57343 1.28190 1.04366 1.21635 0.78891 0.85525 0.86005 1.90777 1.41461 1.26738 1.87224 1.21919 1.05448 0.90463 0.81482 0.82024 1.22746 0.94452 0.95753 1.01549 1.22431 0.99628 0.97121 1.00711 1.21599 0.81341 0.84188 0.82836 1.90731 1.71164 1.58504 1.26669 1.46033 1.25099 1.40372 1.24583 0.91537 0.89585 0.93458 0.92754 0.92452 0.74362 0.86949 0.87014 0.92061 0.92526 0.92241 0.73852 0.84943 0.86831 0.85965 0.88378 0.74672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.94 71.98 0.64 -0.16 16 2 C -0.09 -0.69 2.46 -10.79 -0.03 -0.71 16 3 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 4 C 0.12 2.21 5.06 86.38 0.44 2.64 16 5 N -0.71 -14.55 5.28 -463.06 -2.45 -16.99 16 6 C 0.53 18.18 7.85 87.65 0.69 18.87 16 7 O -0.57 -25.67 15.86 -3.03 -0.05 -25.72 16 8 C -0.13 -4.73 6.16 71.23 0.44 -4.29 16 9 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.54 -30.31 9.50 67.95 0.65 -29.67 16 11 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 12 C 0.01 0.70 5.49 84.86 0.47 1.17 16 13 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 14 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 15 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 16 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.13 1.31 5.06 86.38 0.44 1.75 16 19 N -0.70 -3.16 5.28 -463.06 -2.45 -5.61 16 20 C 0.49 5.09 7.01 87.66 0.61 5.70 16 21 O -0.58 -13.41 16.56 -3.01 -0.05 -13.45 16 22 C 0.12 0.35 3.93 44.70 0.18 0.52 16 23 H 0.16 -0.95 8.14 -2.38 -0.02 -0.97 16 24 C -0.11 0.08 6.69 31.65 0.21 0.29 16 25 C -0.16 -1.28 6.85 30.58 0.21 -1.07 16 26 C 0.51 8.94 8.43 87.90 0.74 9.68 16 27 O -0.59 -16.73 18.03 -3.04 -0.05 -16.79 16 28 N -0.71 -7.88 5.45 -442.96 -2.41 -10.29 16 29 H 0.07 0.36 7.18 -2.38 -0.02 0.35 16 30 H 0.09 -0.01 7.18 -2.39 -0.02 -0.03 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.42 5.22 7.66 -92.71 -0.71 4.51 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.42 -1.59 7.66 -92.70 -0.71 -2.30 16 41 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.11 -0.38 7.89 -2.39 -0.02 -0.40 16 43 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.41 4.38 8.96 -92.71 -0.83 3.55 16 Total: -1.00 -97.30 394.91 -1.83 -99.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.21 Total: 5.35 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.68 Total: 4.71 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -7.02 Total: -88.13 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.15 Total: -55.96 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -97.30 -1.83 -99.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582822449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal (2) G-P(sol) polarization free energy of solvation -97.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds