Wall clock time and date at job start Wed Apr 1 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 N 1.46901 * 109.47027 * 240.00090 * 2 1 3 5 5 C 1.46904 * 110.99783 * 84.99954 * 4 2 1 6 6 C 1.53002 * 109.46821 * 180.02562 * 5 4 2 7 7 H 1.08991 * 109.47336 * 59.99890 * 6 5 4 8 8 O 1.42903 * 109.46908 * 299.99649 * 6 5 4 9 9 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 10 10 N 1.46904 * 109.46815 * 180.45976 * 9 6 5 11 11 C 1.46899 * 110.99898 * 199.84806 * 10 9 6 12 12 C 1.46907 * 110.99778 * 75.89878 * 10 9 6 13 13 C 1.50705 * 109.46801 * 190.00021 * 12 10 9 14 14 H 1.08000 * 120.00039 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99700 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99637 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46790 * 90.00184 * 17 15 13 19 19 H 1.48504 * 109.46797 * 209.99903 * 17 15 13 20 20 H 1.48496 * 109.47396 * 330.00182 * 17 15 13 21 21 C 1.50693 * 109.47005 * 119.99822 * 2 1 3 22 22 N 1.29396 * 124.70376 * 75.02724 * 21 2 1 23 23 C 1.30916 * 117.46599 * 179.97438 * 22 21 2 24 24 C 1.36752 * 113.93099 * 0.02562 * 23 22 21 25 25 C 1.46502 * 126.17701 * 179.97438 * 24 23 22 26 26 O 1.21616 * 120.00348 * 180.02562 * 25 24 23 27 27 O 1.34878 * 120.00030 * 0.02562 * 25 24 23 28 28 S 1.70925 * 124.70789 * 254.71896 * 21 2 1 29 29 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46935 * 299.99857 * 1 2 3 31 31 H 1.08998 * 109.47137 * 59.99794 * 1 2 3 32 32 H 1.00899 * 110.99629 * 208.94942 * 4 2 1 33 33 H 1.09001 * 109.47243 * 59.99867 * 5 4 2 34 34 H 1.09001 * 109.46993 * 299.99834 * 5 4 2 35 35 H 0.96697 * 113.99811 * 300.00080 * 8 6 5 36 36 H 1.09000 * 109.47349 * 300.45489 * 9 6 5 37 37 H 1.09001 * 109.47706 * 60.46216 * 9 6 5 38 38 H 1.08999 * 109.47104 * 64.82506 * 11 10 9 39 39 H 1.09004 * 109.47084 * 184.82138 * 11 10 9 40 40 H 1.09003 * 109.47573 * 304.82062 * 11 10 9 41 41 H 1.09002 * 109.46729 * 309.99402 * 12 10 9 42 42 H 1.08997 * 109.47420 * 69.99907 * 12 10 9 43 43 H 0.96998 * 119.99856 * 179.97438 * 16 15 13 44 44 H 1.07999 * 123.03147 * 179.97438 * 23 22 21 45 45 H 0.96709 * 117.00163 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3564 -3.8030 8 8 3.8999 -1.0497 -3.3053 9 6 2.6609 0.4202 -4.7694 10 7 3.1426 -0.3081 -5.9508 11 6 3.6634 0.6188 -6.9645 12 6 2.0855 -1.1608 -6.5107 13 6 2.6754 -2.0696 -7.5582 14 1 3.7300 -2.0185 -7.7855 15 6 1.8687 -2.9663 -8.2263 16 7 0.5847 -3.0288 -7.9491 17 14 2.5998 -4.0923 -9.5252 18 1 3.0523 -5.3549 -8.8877 19 1 1.5710 -4.3971 -10.5518 20 1 3.7571 -3.4201 -10.1685 21 6 2.0323 -0.7103 1.2304 22 7 2.0188 -1.9934 1.3975 23 6 2.4923 -2.4605 2.5251 24 6 2.9422 -1.4934 3.3808 25 6 3.5216 -1.7146 4.7081 26 8 3.8863 -0.7673 5.3780 27 8 3.6504 -2.9688 5.1873 28 16 2.7059 0.0665 2.5959 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.9174 -1.1204 -1.0287 33 1 2.7588 1.0463 -2.1182 34 1 1.0870 0.6164 -2.5525 35 1 4.5555 -0.3711 -3.0936 36 1 1.6673 0.8209 -4.9698 37 1 3.3442 1.2390 -4.5438 38 1 4.5444 1.1275 -6.5732 39 1 3.9339 0.0617 -7.8615 40 1 2.8983 1.3551 -7.2110 41 1 1.6440 -1.7615 -5.7155 42 1 1.3161 -0.5356 -6.9637 43 1 0.0171 -3.6593 -8.4193 44 1 2.5239 -3.5145 2.7587 45 1 4.0386 -3.0647 6.0678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593248076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:07 Heat of formation + Delta-G solvation = -84.125215 kcal Electronic energy + Delta-G solvation = -26899.892137 eV Core-core repulsion = 22851.631228 eV Total energy + Delta-G solvation = -4048.260909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77238 -39.98888 -38.34691 -36.59292 -36.55183 -35.28691 -32.46479 -32.03056 -30.43823 -29.02475 -27.26183 -26.79403 -25.42026 -23.69648 -23.40988 -22.37269 -21.51148 -20.26999 -19.92835 -18.78935 -18.12057 -17.24477 -16.59987 -16.27943 -16.19372 -15.98220 -15.33022 -15.26809 -14.91227 -14.63515 -14.46852 -14.25719 -13.93074 -13.90713 -13.38225 -13.28524 -12.70568 -12.53111 -12.36782 -12.11323 -12.07887 -12.05005 -11.90729 -11.53431 -11.43979 -11.36631 -11.14160 -10.88490 -10.70959 -10.59166 -10.33340 -10.06504 -10.01840 -9.74623 -9.65002 -9.43130 -9.10917 -8.58987 -8.38147 -7.18900 -5.97943 -3.98319 -0.40606 0.51142 1.09802 1.78415 2.51677 2.64317 3.36384 3.41994 3.45294 3.52393 3.83176 4.34715 4.46752 4.48433 4.70408 4.75881 4.85258 4.88733 5.01057 5.20544 5.32381 5.37652 5.41736 5.51060 5.60836 5.61459 5.69224 5.76680 5.89156 6.02836 6.05583 6.13318 6.32332 6.51728 6.72332 6.77386 7.16942 7.22629 7.31748 7.33052 7.34647 7.83552 8.06509 8.13948 8.23897 8.59011 9.08662 9.65281 11.13110 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.001953 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.420846 B =14332.650817 C =14879.153773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.065 0.935 4 N -0.660 5.660 5 C 0.027 3.973 6 C 0.117 3.883 7 H 0.113 0.887 8 O -0.539 6.539 9 C 0.027 3.973 10 N -0.531 5.531 11 C 0.038 3.962 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.058 3.942 22 N -0.454 5.454 23 C 0.138 3.862 24 C -0.314 4.314 25 C 0.570 3.430 26 O -0.514 6.514 27 O -0.504 6.504 28 S 0.236 5.764 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.355 0.645 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.358 0.642 36 H 0.033 0.967 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.007 0.993 41 H 0.032 0.968 42 H -0.012 1.012 43 H 0.261 0.739 44 H 0.194 0.806 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 8.351 25.242 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 H 0.083 0.917 4 N -0.295 5.295 5 C -0.103 4.103 6 C 0.057 3.943 7 H 0.131 0.869 8 O -0.342 6.342 9 C -0.103 4.103 10 N -0.255 5.255 11 C -0.111 4.111 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.216 4.216 22 N -0.167 5.167 23 C -0.023 4.023 24 C -0.436 4.436 25 C 0.412 3.588 26 O -0.404 6.404 27 O -0.316 6.316 28 S 0.496 5.504 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.175 0.825 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.203 0.797 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.026 0.974 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.070 0.930 44 H 0.210 0.790 45 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.194 8.225 24.652 26.080 hybrid contribution 0.853 -0.083 0.220 0.885 sum 3.047 8.142 24.872 26.347 Atomic orbital electron populations 1.21838 0.91731 1.04065 1.01998 1.20283 0.97320 0.93814 0.83966 0.91716 1.60410 1.35207 1.31835 1.02023 1.22834 1.01726 0.93801 0.91941 1.21967 0.85094 0.97294 0.89910 0.86923 1.86728 1.19137 1.36398 1.91890 1.22657 0.98513 0.95523 0.93646 1.62028 1.37823 1.20060 1.05570 1.22226 0.97285 0.94758 0.96825 1.19775 0.87720 0.91117 0.94645 1.21148 0.95204 1.18707 1.19241 0.91911 1.24987 0.94831 0.97397 0.97484 1.69954 1.04311 1.37106 1.42490 0.86502 0.78638 0.81128 0.81149 1.20589 1.21409 1.19941 1.27932 0.99502 0.93139 1.01064 1.66151 1.17755 1.11777 1.21042 1.22874 0.91705 1.01478 0.86261 1.24930 1.19582 0.98397 1.00691 1.18991 0.74669 0.80746 0.84353 1.90977 1.47297 1.43003 1.59115 1.84564 1.77214 1.29938 1.39907 1.84114 1.52141 1.05789 1.08359 0.90522 0.92427 0.90950 0.82455 0.95132 0.89848 0.79744 0.94840 0.92374 0.93841 0.90442 0.97422 0.94967 0.99412 0.92985 0.78971 0.72064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.40 37.16 0.35 -0.86 16 2 C 0.16 1.47 3.11 -68.86 -0.21 1.25 16 3 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 4 N -0.66 -7.68 6.27 -107.95 -0.68 -8.35 16 5 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16 6 C 0.12 1.83 3.30 -26.73 -0.09 1.74 16 7 H 0.11 2.19 6.78 -51.93 -0.35 1.84 16 8 O -0.54 -8.65 12.55 -35.23 -0.44 -9.09 16 9 C 0.03 0.44 4.66 -3.82 -0.02 0.42 16 10 N -0.53 -11.32 4.56 -244.36 -1.11 -12.44 16 11 C 0.04 0.73 9.37 60.06 0.56 1.29 16 12 C 0.19 5.03 4.55 -4.97 -0.02 5.00 16 13 C -0.50 -14.38 8.39 -34.44 -0.29 -14.67 16 14 H 0.06 1.78 7.16 -52.49 -0.38 1.41 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.06 0.55 5.89 -13.31 -0.08 0.47 16 22 N -0.45 -4.98 10.45 -11.26 -0.12 -5.09 16 23 C 0.14 1.26 11.20 -18.48 -0.21 1.06 16 24 C -0.31 -2.86 6.51 -36.79 -0.24 -3.10 16 25 C 0.57 5.10 8.30 34.06 0.28 5.39 16 26 O -0.51 -5.94 17.75 -19.36 -0.34 -6.28 16 27 O -0.50 -2.93 13.23 -40.98 -0.54 -3.47 16 28 S 0.24 1.96 23.00 -107.50 -2.47 -0.51 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 32 H 0.35 4.39 7.74 -39.29 -0.30 4.08 16 33 H 0.03 0.29 8.06 -51.93 -0.42 -0.13 16 34 H 0.08 0.92 7.44 -51.93 -0.39 0.53 16 35 H 0.36 4.25 9.04 45.56 0.41 4.66 16 36 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 37 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.63 6.66 -51.93 -0.35 1.28 16 40 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 41 H 0.03 0.90 6.63 -51.93 -0.34 0.56 16 42 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.42 0.51 9.11 45.56 0.42 0.92 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -35.26 394.13 -9.12 -44.39 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.99 Total: 4.43 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.17 Total: -52.13 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.33 Total: -18.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.26 -9.12 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593248076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.740 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds