Wall clock time and date at job start Wed Apr 1 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47056 * 2 1 4 4 O 1.42901 * 109.46854 * 240.00130 * 2 1 3 5 5 C 1.35867 * 117.00086 * 86.18776 * 4 2 1 6 6 C 1.38829 * 119.93736 * 354.44664 * 5 4 2 7 7 C 1.37918 * 120.06162 * 179.76460 * 6 5 4 8 8 C 1.39344 * 119.93425 * 0.51583 * 7 6 5 9 9 C 1.48436 * 120.06015 * 179.76586 * 8 7 6 10 10 N 1.34052 * 126.67637 * 180.02562 * 9 8 7 11 11 N 1.28988 * 107.26623 * 179.97438 * 10 9 8 12 12 N 1.28722 * 108.94756 * 359.97438 * 11 10 9 13 13 H 0.96999 * 125.34180 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31986 * 359.76555 * 12 11 10 15 15 C 1.39342 * 119.88166 * 359.74216 * 8 7 6 16 16 C 1.37913 * 119.93515 * 359.97438 * 15 8 7 17 17 C 1.50705 * 109.47230 * 120.00381 * 2 1 3 18 18 O 1.21284 * 119.99769 * 119.99840 * 17 2 1 19 19 N 1.34777 * 119.99794 * 299.99586 * 17 2 1 20 20 C 1.37095 * 119.99920 * 180.02562 * 19 17 2 21 21 H 1.07996 * 120.00082 * 223.91255 * 20 19 17 22 22 C 1.38949 * 120.00009 * 43.91368 * 20 19 17 23 23 N 1.31415 * 119.99848 * 17.58048 * 22 20 19 24 24 Si 1.86799 * 120.00299 * 197.58194 * 22 20 19 25 25 H 1.48496 * 109.47457 * 89.99579 * 24 22 20 26 26 H 1.48500 * 109.47316 * 210.00099 * 24 22 20 27 27 H 1.48509 * 109.46897 * 329.99709 * 24 22 20 28 28 C 1.46506 * 120.00104 * 0.02562 * 19 17 2 29 29 C 1.52991 * 117.49904 * 187.10994 * 28 19 17 30 30 C 1.52995 * 117.49910 * 118.44672 * 28 19 17 31 31 H 1.09005 * 109.46867 * 299.99877 * 1 2 3 32 32 H 1.09003 * 109.47471 * 59.99911 * 1 2 3 33 33 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 34 34 H 1.07998 * 119.96848 * 0.02562 * 6 5 4 35 35 H 1.07994 * 120.03115 * 180.25540 * 7 6 5 36 36 H 1.08001 * 120.03212 * 180.02562 * 15 8 7 37 37 H 1.07997 * 119.97049 * 179.97438 * 16 15 8 38 38 H 0.96999 * 119.99573 * 184.96211 * 23 22 20 39 39 H 1.08999 * 115.54347 * 332.77528 * 28 19 17 40 40 H 1.09008 * 117.49983 * 359.97438 * 29 28 19 41 41 H 1.09000 * 117.50240 * 145.01666 * 29 28 19 42 42 H 1.09003 * 117.49755 * 214.97844 * 30 28 19 43 43 H 1.08999 * 117.49979 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1360 0.0683 -2.2976 6 6 1.7029 1.3872 -2.3144 7 6 1.8378 2.1441 -3.4594 8 6 2.3995 1.5805 -4.6034 9 6 2.5412 2.3910 -5.8388 10 7 3.0585 1.9860 -7.0073 11 7 2.9984 2.9859 -7.8198 12 7 2.4687 3.9884 -7.2104 13 1 2.3109 4.8625 -7.6002 14 7 2.1769 3.6473 -6.0023 15 6 2.8284 0.2549 -4.5853 16 6 2.6964 -0.4956 -3.4358 17 6 2.0324 -0.7105 1.2304 18 8 2.7296 -1.6966 1.1190 19 7 1.7068 -0.2500 2.4546 20 6 2.1643 -0.8961 3.5739 21 1 1.4972 -1.0761 4.4040 22 6 3.4861 -1.3191 3.6405 23 7 4.3788 -0.8176 2.8167 24 14 3.9943 -2.6008 4.9008 25 1 3.8499 -3.9571 4.3136 26 1 5.4099 -2.3781 5.2902 27 1 3.1270 -2.4860 6.1009 28 6 0.8642 0.9408 2.5891 29 6 0.6666 1.5113 3.9948 30 6 -0.4818 0.7774 3.2979 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2639 1.8222 -1.4288 35 1 1.5045 3.1713 -3.4707 36 1 3.2644 -0.1842 -5.4704 37 1 3.0282 -1.5232 -3.4213 38 1 5.2848 -1.1640 2.8141 39 1 0.9146 1.6482 1.7613 40 1 1.1632 1.0004 4.8198 41 1 0.5865 2.5940 4.0920 42 1 -1.3169 1.3777 2.9367 43 1 -0.7406 -0.2162 3.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603710480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:59 Heat of formation + Delta-G solvation = 130.919429 kcal Electronic energy + Delta-G solvation = -29263.719932 eV Core-core repulsion = 25121.632858 eV Total energy + Delta-G solvation = -4142.087074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.58544 -40.27861 -38.80857 -37.39075 -35.99895 -34.46310 -33.51016 -32.86005 -32.02601 -31.03495 -30.40669 -29.50268 -25.34427 -24.90115 -24.62062 -23.51885 -22.51765 -21.81724 -21.50463 -21.03939 -19.65156 -19.25693 -18.01302 -17.28161 -16.76458 -16.43782 -16.19870 -15.45926 -15.09071 -14.80159 -14.56577 -14.32982 -13.99219 -13.75293 -13.62213 -13.30351 -13.15730 -12.87451 -12.71467 -12.64298 -12.29929 -12.00830 -11.75366 -11.51216 -11.48298 -11.34287 -11.23680 -11.06999 -10.96223 -10.85783 -10.73120 -10.59390 -10.31428 -10.18486 -10.01729 -9.81038 -9.04926 -8.75905 -8.15131 -7.91340 -7.14507 -6.14696 -3.96532 0.69791 1.09166 1.35202 2.07191 2.30755 3.25698 3.32421 3.37569 3.40096 3.60472 3.81203 3.95548 4.07993 4.25342 4.63739 4.74852 4.82732 4.93304 5.07682 5.14010 5.21778 5.28393 5.33227 5.42199 5.46036 5.47264 5.52539 5.63315 5.65572 5.81727 5.95253 5.97680 6.04030 6.13182 6.15272 6.26376 6.31960 6.38025 6.41843 6.46420 6.63073 6.70271 6.86081 7.54536 7.62536 7.99918 8.19624 8.95190 9.06305 9.54690 10.15048 10.91814 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002496 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.867612 B =11217.086320 C =12046.223990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 H 0.083 0.917 4 O -0.275 6.275 5 C 0.171 3.829 6 C -0.220 4.220 7 C -0.034 4.034 8 C -0.080 4.080 9 C 0.237 3.763 10 N -0.274 5.274 11 N -0.053 5.053 12 N -0.232 5.232 13 H 0.474 0.526 14 N -0.303 5.303 15 C -0.033 4.033 16 C -0.158 4.158 17 C 0.488 3.512 18 O -0.508 6.508 19 N -0.421 5.421 20 C -0.345 4.345 21 H 0.081 0.919 22 C 0.071 3.929 23 N -0.830 5.830 24 Si 0.910 3.090 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.069 3.931 29 C -0.173 4.173 30 C -0.207 4.207 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.266 0.734 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 11.031 -13.736 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.008 3.992 3 H 0.101 0.899 4 O -0.185 6.185 5 C 0.122 3.878 6 C -0.239 4.239 7 C -0.054 4.054 8 C -0.084 4.084 9 C -0.042 4.042 10 N -0.147 5.147 11 N -0.049 5.049 12 N -0.077 5.077 13 H 0.327 0.673 14 N -0.155 5.155 15 C -0.053 4.053 16 C -0.177 4.177 17 C 0.273 3.727 18 O -0.383 6.383 19 N -0.144 5.144 20 C -0.471 4.471 21 H 0.099 0.901 22 C -0.140 4.140 23 N -0.463 5.463 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.198 1.198 28 C -0.037 4.037 29 C -0.211 4.211 30 C -0.246 4.246 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.876 10.421 -14.411 19.068 hybrid contribution 0.035 0.355 0.768 0.846 sum -6.841 10.776 -13.644 18.684 Atomic orbital electron populations 1.22535 0.93778 1.04147 1.03420 1.22480 0.94859 0.96963 0.84931 0.89916 1.86269 1.79450 1.36629 1.16181 1.19430 0.91101 0.89959 0.87279 1.21278 1.08208 0.94323 1.00065 1.20865 0.94458 0.99428 0.90646 1.17036 1.09267 0.93197 0.88863 1.23693 0.97348 0.88261 0.94891 1.76080 1.19027 1.19584 1.00004 1.78876 1.12421 0.91641 1.21938 1.47688 1.38733 1.15000 1.06296 0.67261 1.74937 1.23324 1.15932 1.01286 1.20911 0.95097 0.91637 0.97653 1.20407 1.04586 1.01855 0.90827 1.19258 0.84625 0.86039 0.82773 1.90572 1.36619 1.26362 1.84741 1.42589 1.45628 1.21834 1.04340 1.18866 0.93553 1.38709 0.95997 0.90126 1.25233 0.95124 0.96788 0.96817 1.69861 1.03381 1.36718 1.36364 0.86245 0.77547 0.82100 0.80466 1.20251 1.21254 1.19788 1.21772 0.94208 0.91955 0.95740 1.23134 1.01784 0.98634 0.97538 1.23372 0.92305 1.02188 1.06720 0.89046 0.92118 0.91138 0.84440 0.84970 0.84245 0.84162 0.92379 0.87979 0.87314 0.89704 0.89626 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.83 37.16 0.33 -2.41 16 2 C 0.07 1.29 1.85 -27.88 -0.05 1.23 16 3 H 0.08 1.44 5.65 -51.93 -0.29 1.15 16 4 O -0.27 -5.42 9.32 -39.23 -0.37 -5.78 16 5 C 0.17 2.75 6.62 -39.14 -0.26 2.49 16 6 C -0.22 -3.00 8.28 -39.48 -0.33 -3.32 16 7 C -0.03 -0.41 9.69 -39.29 -0.38 -0.79 16 8 C -0.08 -1.02 5.88 -104.87 -0.62 -1.64 16 9 C 0.24 2.95 7.93 -156.30 -1.24 1.71 16 10 N -0.27 -3.49 12.23 32.15 0.39 -3.10 16 11 N -0.05 -0.57 13.47 60.35 0.81 0.25 16 12 N -0.23 -1.82 7.90 60.35 0.48 -1.34 16 13 H 0.47 1.32 8.96 -340.37 -3.05 -1.73 16 14 N -0.30 -3.22 12.08 32.17 0.39 -2.83 16 15 C -0.03 -0.42 9.70 -39.29 -0.38 -0.80 16 16 C -0.16 -2.27 9.97 -39.48 -0.39 -2.66 16 17 C 0.49 12.11 6.44 -10.98 -0.07 12.04 16 18 O -0.51 -15.06 14.20 -14.36 -0.20 -15.27 16 19 N -0.42 -10.04 2.85 -107.73 -0.31 -10.35 16 20 C -0.34 -9.07 7.81 -14.93 -0.12 -9.19 16 21 H 0.08 2.04 7.41 -52.49 -0.39 1.65 16 22 C 0.07 1.97 4.41 -17.47 -0.08 1.89 16 23 N -0.83 -24.31 11.66 55.50 0.65 -23.66 16 24 Si 0.91 21.54 29.59 -169.99 -5.03 16.51 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.07 1.27 4.30 -67.93 -0.29 0.98 16 29 C -0.17 -2.89 9.81 -26.70 -0.26 -3.15 16 30 C -0.21 -3.19 9.37 -26.70 -0.25 -3.44 16 31 H 0.09 1.28 4.34 -51.93 -0.23 1.06 16 32 H 0.06 0.76 7.04 -51.93 -0.37 0.39 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.14 1.69 5.45 -52.49 -0.29 1.41 16 35 H 0.13 1.37 7.88 -52.49 -0.41 0.96 16 36 H 0.14 1.55 7.88 -52.49 -0.41 1.14 16 37 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.27 7.55 8.32 -40.82 -0.34 7.21 16 39 H 0.10 1.63 6.27 -51.93 -0.33 1.30 16 40 H 0.11 2.05 6.83 -51.92 -0.35 1.70 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -35.12 362.16 -9.49 -44.60 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.37 Total: 2.58 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.39 Total: -7.06 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 2.41 Total: -41.04 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.57 Total: -21.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.12 -9.49 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603710480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.522 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds