Wall clock time and date at job start Wed Apr 1 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47056 * 2 1 4 4 O 1.42901 * 109.46854 * 240.00130 * 2 1 3 5 5 C 1.35867 * 117.00086 * 86.18776 * 4 2 1 6 6 C 1.38829 * 119.93736 * 354.44664 * 5 4 2 7 7 C 1.37918 * 120.06162 * 179.76460 * 6 5 4 8 8 C 1.39344 * 119.93425 * 0.51583 * 7 6 5 9 9 C 1.48436 * 120.06015 * 179.76586 * 8 7 6 10 10 N 1.34052 * 126.67637 * 180.02562 * 9 8 7 11 11 N 1.28988 * 107.26623 * 179.97438 * 10 9 8 12 12 N 1.28722 * 108.94756 * 359.97438 * 11 10 9 13 13 H 0.96999 * 125.34180 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31986 * 359.76555 * 12 11 10 15 15 C 1.39342 * 119.88166 * 359.74216 * 8 7 6 16 16 C 1.37913 * 119.93515 * 359.97438 * 15 8 7 17 17 C 1.50705 * 109.47230 * 120.00381 * 2 1 3 18 18 O 1.21284 * 119.99769 * 119.99840 * 17 2 1 19 19 N 1.34777 * 119.99794 * 299.99586 * 17 2 1 20 20 C 1.37095 * 119.99920 * 180.02562 * 19 17 2 21 21 H 1.07996 * 120.00082 * 223.91255 * 20 19 17 22 22 C 1.38949 * 120.00009 * 43.91368 * 20 19 17 23 23 N 1.31415 * 119.99848 * 17.58048 * 22 20 19 24 24 Si 1.86799 * 120.00299 * 197.58194 * 22 20 19 25 25 H 1.48496 * 109.47457 * 89.99579 * 24 22 20 26 26 H 1.48500 * 109.47316 * 210.00099 * 24 22 20 27 27 H 1.48509 * 109.46897 * 329.99709 * 24 22 20 28 28 C 1.46506 * 120.00104 * 0.02562 * 19 17 2 29 29 C 1.52991 * 117.49904 * 187.10994 * 28 19 17 30 30 C 1.52995 * 117.49910 * 118.44672 * 28 19 17 31 31 H 1.09005 * 109.46867 * 299.99877 * 1 2 3 32 32 H 1.09003 * 109.47471 * 59.99911 * 1 2 3 33 33 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 34 34 H 1.07998 * 119.96848 * 0.02562 * 6 5 4 35 35 H 1.07994 * 120.03115 * 180.25540 * 7 6 5 36 36 H 1.08001 * 120.03212 * 180.02562 * 15 8 7 37 37 H 1.07997 * 119.97049 * 179.97438 * 16 15 8 38 38 H 0.96999 * 119.99573 * 184.96211 * 23 22 20 39 39 H 1.08999 * 115.54347 * 332.77528 * 28 19 17 40 40 H 1.09008 * 117.49983 * 359.97438 * 29 28 19 41 41 H 1.09000 * 117.50240 * 145.01666 * 29 28 19 42 42 H 1.09003 * 117.49755 * 214.97844 * 30 28 19 43 43 H 1.08999 * 117.49979 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1360 0.0683 -2.2976 6 6 1.7029 1.3872 -2.3144 7 6 1.8378 2.1441 -3.4594 8 6 2.3995 1.5805 -4.6034 9 6 2.5412 2.3910 -5.8388 10 7 3.0585 1.9860 -7.0073 11 7 2.9984 2.9859 -7.8198 12 7 2.4687 3.9884 -7.2104 13 1 2.3109 4.8625 -7.6002 14 7 2.1769 3.6473 -6.0023 15 6 2.8284 0.2549 -4.5853 16 6 2.6964 -0.4956 -3.4358 17 6 2.0324 -0.7105 1.2304 18 8 2.7296 -1.6966 1.1190 19 7 1.7068 -0.2500 2.4546 20 6 2.1643 -0.8961 3.5739 21 1 1.4972 -1.0761 4.4040 22 6 3.4861 -1.3191 3.6405 23 7 4.3788 -0.8176 2.8167 24 14 3.9943 -2.6008 4.9008 25 1 3.8499 -3.9571 4.3136 26 1 5.4099 -2.3781 5.2902 27 1 3.1270 -2.4860 6.1009 28 6 0.8642 0.9408 2.5891 29 6 0.6666 1.5113 3.9948 30 6 -0.4818 0.7774 3.2979 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2639 1.8222 -1.4288 35 1 1.5045 3.1713 -3.4707 36 1 3.2644 -0.1842 -5.4704 37 1 3.0282 -1.5232 -3.4213 38 1 5.2848 -1.1640 2.8141 39 1 0.9146 1.6482 1.7613 40 1 1.1632 1.0004 4.8198 41 1 0.5865 2.5940 4.0920 42 1 -1.3169 1.3777 2.9367 43 1 -0.7406 -0.2162 3.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603710480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:58 Heat of formation + Delta-G solvation = 107.675514 kcal Electronic energy + Delta-G solvation = -29264.727863 eV Core-core repulsion = 25121.632858 eV Total energy + Delta-G solvation = -4143.095006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.41725 -41.58311 -40.32122 -38.64554 -37.64027 -35.32131 -34.82104 -34.38116 -33.48826 -32.40658 -31.78465 -30.58351 -27.19604 -25.81007 -25.74823 -24.72251 -23.69402 -23.08987 -22.69402 -22.41034 -21.19946 -20.17291 -19.25037 -18.43839 -18.09988 -17.90056 -17.45195 -16.81044 -16.64044 -16.39870 -15.84151 -15.65557 -15.32846 -15.18768 -14.85681 -14.62002 -14.42873 -14.28706 -13.88228 -13.69184 -13.64998 -13.21345 -13.00083 -12.94323 -12.83993 -12.80410 -12.62417 -12.38492 -12.28021 -12.20619 -12.13785 -12.03992 -11.76456 -11.52144 -11.45146 -11.18065 -10.70846 -10.07457 -9.93880 -9.11614 -9.01314 -8.19166 -6.02886 -0.24691 0.21219 0.33013 1.32017 1.36686 1.44622 1.46660 1.49188 1.95240 2.20052 2.40861 2.70894 2.77704 3.09263 3.15649 3.19801 3.34785 3.69529 3.87425 3.90251 3.99830 4.10591 4.16920 4.18755 4.25783 4.26320 4.42025 4.44854 4.49546 4.60745 4.75551 4.81996 4.95323 5.01870 5.05019 5.18837 5.24210 5.30563 5.31577 5.40248 5.48006 5.53557 5.65133 5.66268 6.16413 6.40816 6.99338 7.15547 7.17668 7.62761 8.28147 8.85514 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002496 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.867612 B =11217.086320 C =12046.223990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 H 0.099 0.901 4 O -0.311 6.311 5 C 0.139 3.861 6 C -0.214 4.214 7 C -0.027 4.027 8 C -0.077 4.077 9 C 0.222 3.778 10 N -0.298 5.298 11 N -0.058 5.058 12 N -0.200 5.200 13 H 0.494 0.506 14 N -0.297 5.297 15 C -0.030 4.030 16 C -0.168 4.168 17 C 0.468 3.532 18 O -0.575 6.575 19 N -0.435 5.435 20 C -0.347 4.347 21 H 0.085 0.915 22 C 0.018 3.982 23 N -0.870 5.870 24 Si 0.964 3.036 25 H -0.293 1.293 26 H -0.284 1.284 27 H -0.250 1.250 28 C 0.039 3.961 29 C -0.173 4.173 30 C -0.177 4.177 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.257 0.743 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 14.139 -14.577 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 H 0.116 0.884 4 O -0.223 6.223 5 C 0.092 3.908 6 C -0.233 4.233 7 C -0.047 4.047 8 C -0.080 4.080 9 C -0.057 4.057 10 N -0.171 5.171 11 N -0.053 5.053 12 N -0.051 5.051 13 H 0.353 0.647 14 N -0.150 5.150 15 C -0.050 4.050 16 C -0.187 4.187 17 C 0.256 3.744 18 O -0.455 6.455 19 N -0.156 5.156 20 C -0.475 4.475 21 H 0.102 0.898 22 C -0.188 4.188 23 N -0.505 5.505 24 Si 0.789 3.211 25 H -0.220 1.220 26 H -0.210 1.210 27 H -0.173 1.173 28 C -0.066 4.066 29 C -0.211 4.211 30 C -0.215 4.215 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.067 0.933 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.138 0.862 42 H 0.149 0.851 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.252 13.592 -15.240 22.419 hybrid contribution 0.685 -0.475 0.892 1.221 sum -8.567 13.116 -14.348 21.244 Atomic orbital electron populations 1.22481 0.90602 1.03848 1.05676 1.22282 0.96959 0.96200 0.82564 0.88368 1.86208 1.80720 1.38189 1.17213 1.19693 0.93340 0.91208 0.86553 1.21416 1.07605 0.93160 1.01099 1.21086 0.93613 1.00273 0.89732 1.17206 1.08304 0.93121 0.89418 1.23615 0.98430 0.88883 0.94813 1.76071 1.19939 1.20665 1.00395 1.78832 1.12808 0.91876 1.21735 1.47761 1.36554 1.15464 1.05359 0.64672 1.74888 1.22885 1.15101 1.02128 1.21004 0.94826 0.91811 0.97359 1.20506 1.04862 1.02076 0.91230 1.20329 0.83610 0.85720 0.84740 1.90515 1.39543 1.29343 1.86126 1.42815 1.45748 1.23419 1.03612 1.19126 0.93291 1.38431 0.96632 0.89789 1.26047 0.95604 0.98626 0.98546 1.69971 1.03261 1.38384 1.38899 0.85398 0.77661 0.78869 0.79163 1.21959 1.20976 1.17334 1.22139 0.95484 0.91008 0.97941 1.23197 1.02036 1.00531 0.95323 1.23404 0.92170 1.01809 1.04129 0.87570 0.88821 0.92761 0.82848 0.82480 0.83023 0.84643 0.93331 0.85054 0.90233 0.86240 0.85073 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 8.83 71.98 0.64 -4.13 16 2 C 0.08 3.01 1.85 29.85 0.06 3.06 16 3 H 0.10 3.31 5.65 -2.39 -0.01 3.30 16 4 O -0.31 -12.64 9.32 -73.02 -0.68 -13.32 16 5 C 0.14 4.48 6.62 22.55 0.15 4.63 16 6 C -0.21 -5.42 8.28 22.34 0.19 -5.24 16 7 C -0.03 -0.59 9.69 22.46 0.22 -0.37 16 8 C -0.08 -1.83 5.88 -20.03 -0.12 -1.95 16 9 C 0.22 5.04 7.93 137.37 1.09 6.13 16 10 N -0.30 -7.10 12.23 -52.19 -0.64 -7.74 16 11 N -0.06 -1.09 13.47 37.02 0.50 -0.59 16 12 N -0.20 -2.55 7.90 37.02 0.29 -2.26 16 13 H 0.49 1.09 8.96 -347.54 -3.12 -2.03 16 14 N -0.30 -5.41 12.08 -52.14 -0.63 -6.04 16 15 C -0.03 -0.75 9.70 22.46 0.22 -0.53 16 16 C -0.17 -4.93 9.97 22.33 0.22 -4.70 16 17 C 0.47 23.96 6.44 87.66 0.56 24.53 16 18 O -0.58 -36.10 14.20 15.99 0.23 -35.87 16 19 N -0.43 -20.92 2.85 -613.15 -1.74 -22.66 16 20 C -0.35 -18.71 7.81 84.04 0.66 -18.06 16 21 H 0.08 4.33 7.41 -2.91 -0.02 4.30 16 22 C 0.02 1.02 4.41 84.93 0.37 1.39 16 23 N -0.87 -53.38 11.66 21.66 0.25 -53.13 16 24 Si 0.96 45.78 29.59 68.60 2.03 47.81 16 25 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 28 C 0.04 1.34 4.30 44.99 0.19 1.53 16 29 C -0.17 -5.35 9.81 30.62 0.30 -5.05 16 30 C -0.18 -4.85 9.37 30.62 0.29 -4.56 16 31 H 0.11 2.63 4.34 -2.38 -0.01 2.62 16 32 H 0.09 2.02 7.04 -2.39 -0.02 2.00 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.15 3.29 5.45 -2.91 -0.02 3.27 16 35 H 0.16 2.64 7.88 -2.91 -0.02 2.61 16 36 H 0.15 3.31 7.88 -2.91 -0.02 3.29 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 39 H 0.13 3.73 6.27 -2.39 -0.01 3.71 16 40 H 0.08 2.94 6.83 -2.38 -0.02 2.93 16 41 H 0.12 2.84 8.14 -2.39 -0.02 2.83 16 42 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -82.11 362.16 2.62 -79.49 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -2.02 Total: 17.62 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.03 Total: -3.31 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -1.97 Total: -92.42 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -0.45 Total: -49.19 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -82.11 2.62 -79.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603710480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.168 kcal (2) G-P(sol) polarization free energy of solvation -82.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds