Wall clock time and date at job start Wed Apr 1 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47445 * 2 1 4 4 C 1.46503 * 120.00234 * 90.00048 * 3 2 1 5 5 C 1.52997 * 109.47242 * 89.99945 * 4 3 2 6 6 N 1.46895 * 109.46940 * 179.97438 * 5 4 3 7 7 C 1.46908 * 110.99909 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.51866 * 35.12631 * 7 6 5 9 9 C 1.53232 * 109.52425 * 155.31973 * 7 6 5 10 10 C 1.53242 * 108.56852 * 175.52098 * 9 7 6 11 11 C 1.50591 * 109.06606 * 304.20503 * 10 9 7 12 12 O 1.21237 * 119.36384 * 209.28038 * 11 10 9 13 13 N 1.34138 * 121.27961 * 29.54800 * 11 10 9 14 14 C 1.34148 * 122.58329 * 358.90555 * 13 11 10 15 15 O 1.21226 * 119.35637 * 180.82747 * 14 13 11 16 16 C 1.34774 * 120.00052 * 269.99919 * 3 2 1 17 17 O 1.21282 * 120.00344 * 179.97438 * 16 3 2 18 18 C 1.50706 * 119.99975 * 0.02562 * 16 3 2 19 19 S 1.81005 * 109.47271 * 179.97438 * 18 16 3 20 20 C 1.76197 * 99.99834 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00045 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99775 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00133 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00061 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47331 * 89.99959 * 24 22 20 26 26 H 1.48504 * 109.47074 * 210.00273 * 24 22 20 27 27 H 1.48498 * 109.47052 * 330.00226 * 24 22 20 28 28 H 1.08994 * 109.46844 * 59.99767 * 1 2 3 29 29 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46635 * 300.00247 * 1 2 3 31 31 H 1.08998 * 109.47114 * 239.99763 * 2 1 3 32 32 H 1.09000 * 109.47144 * 119.99894 * 2 1 3 33 33 H 1.09004 * 109.46924 * 330.00013 * 4 3 2 34 34 H 1.08996 * 109.47027 * 210.00551 * 4 3 2 35 35 H 1.09004 * 109.47106 * 60.00179 * 5 4 3 36 36 H 1.08998 * 109.47128 * 300.00469 * 5 4 3 37 37 H 1.00900 * 111.00359 * 303.95250 * 6 5 4 38 38 H 1.09009 * 109.62399 * 295.24195 * 9 7 6 39 39 H 1.08998 * 109.62394 * 55.60942 * 9 7 6 40 40 H 1.09000 * 109.52451 * 64.29136 * 10 9 7 41 41 H 1.09008 * 109.52336 * 184.47945 * 10 9 7 42 42 H 0.97001 * 118.71201 * 179.19821 * 13 11 10 43 43 H 1.09008 * 109.46418 * 299.99411 * 18 16 3 44 44 H 1.08997 * 109.47204 * 59.99280 * 18 16 3 45 45 H 0.97002 * 120.00596 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7104 6 7 3.9526 2.5244 2.9822 7 6 5.3336 2.3159 3.4379 8 1 5.9994 2.2763 2.5758 9 6 5.7498 3.4701 4.3557 10 6 7.1489 3.1752 4.9069 11 6 7.1346 1.8352 5.5938 12 8 7.8953 1.6315 6.5156 13 7 6.3002 0.8606 5.2022 14 6 5.4214 1.0209 4.2014 15 8 4.6840 0.1052 3.9057 16 6 2.2431 2.0165 -1.1672 17 8 2.6470 3.1601 -1.1672 18 6 1.9913 1.3063 -2.4723 19 16 2.3829 2.4154 -3.8481 20 6 2.0096 1.3592 -5.2082 21 1 1.6553 0.3547 -5.0305 22 6 2.1721 1.8181 -6.5081 23 7 1.8937 1.0290 -7.5242 24 14 2.7857 3.5554 -6.8155 25 1 4.2685 3.5496 -6.8965 26 1 2.2221 4.0607 -8.0931 27 1 2.3544 4.4371 -5.7012 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 4.3884 2.2154 0.9507 36 1 3.8745 0.7621 1.8407 37 1 3.7426 3.5082 2.9043 38 1 5.7687 4.4006 3.7881 39 1 5.0403 3.5577 5.1785 40 1 7.8676 3.1607 4.0875 41 1 7.4282 3.9472 5.6240 42 1 6.3305 0.0079 5.6635 43 1 2.6213 0.4185 -2.5302 44 1 0.9433 1.0125 -2.5298 45 1 2.0069 1.3497 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668365789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:58 Heat of formation + Delta-G solvation = -105.334275 kcal Electronic energy + Delta-G solvation = -27349.345592 eV Core-core repulsion = 23300.164989 eV Total energy + Delta-G solvation = -4049.180603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91655 -39.78968 -39.31696 -37.12053 -36.02558 -35.40032 -33.50053 -32.45600 -31.23279 -29.89429 -28.58552 -26.26307 -25.59490 -24.55006 -23.47691 -23.27649 -22.43204 -19.86012 -19.02957 -18.22060 -17.77649 -17.64804 -17.06009 -16.73631 -16.30638 -15.66618 -15.64727 -15.19500 -15.06863 -15.01088 -14.84693 -14.62262 -14.09780 -13.82925 -13.70903 -13.53035 -13.46026 -13.13064 -12.83937 -12.76968 -12.44241 -12.34483 -12.02149 -11.84591 -11.69009 -11.29924 -11.17908 -11.14116 -11.01387 -10.87732 -10.67529 -10.66443 -10.60448 -9.87634 -9.51951 -9.02408 -9.00781 -8.67076 -8.51254 -6.93982 -6.30478 -4.02361 1.06002 2.21047 2.31729 2.66985 2.88971 3.10576 3.30634 3.36980 3.47981 3.54350 3.72857 3.85748 4.02502 4.30900 4.34869 4.45982 4.57468 4.62850 4.83012 4.90323 4.93808 5.01432 5.04593 5.08356 5.17217 5.20818 5.26927 5.36122 5.43554 5.54721 5.66892 5.68704 5.71313 5.79862 5.88993 5.96497 6.18822 6.23955 6.39718 6.60163 6.82651 6.92426 7.38621 7.43345 7.92539 8.40086 8.40751 9.15605 10.78727 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002168 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.643300 B =12914.042113 C =13791.290708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.616 5.616 4 C 0.123 3.877 5 C 0.039 3.961 6 N -0.667 5.667 7 C 0.069 3.931 8 H 0.093 0.907 9 C -0.128 4.128 10 C -0.140 4.140 11 C 0.525 3.475 12 O -0.507 6.507 13 N -0.675 5.675 14 C 0.529 3.471 15 O -0.479 6.479 16 C 0.533 3.467 17 O -0.520 6.520 18 C -0.122 4.122 19 S -0.145 6.145 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.355 0.645 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.412 0.588 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 2.183 26.536 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.351 5.351 4 C -0.001 4.001 5 C -0.091 4.091 6 N -0.301 5.301 7 C -0.045 4.045 8 H 0.110 0.890 9 C -0.166 4.166 10 C -0.180 4.180 11 C 0.314 3.686 12 O -0.380 6.380 13 N -0.342 5.342 14 C 0.315 3.685 15 O -0.349 6.349 16 C 0.321 3.679 17 O -0.395 6.395 18 C -0.272 4.272 19 S 0.081 5.919 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.176 0.824 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.252 0.748 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.196 2.946 26.902 27.763 hybrid contribution 0.244 -0.749 -0.836 1.149 sum 6.440 2.197 26.065 26.939 Atomic orbital electron populations 1.22211 0.95760 1.02385 1.02686 1.21603 0.94642 0.82140 1.03519 1.47910 1.67203 1.14676 1.05331 1.21201 0.95155 0.98744 0.84979 1.22551 0.97650 1.00627 0.88238 1.60015 1.20110 1.17831 1.32111 1.21545 0.92885 0.91960 0.98062 0.88973 1.21952 0.95887 0.98400 1.00327 1.21919 0.99407 0.93853 1.02871 1.21001 0.78307 0.86531 0.82797 1.90807 1.37675 1.81716 1.27758 1.44915 1.36283 1.18218 1.34762 1.20937 0.78191 0.90538 0.78815 1.90758 1.38483 1.41972 1.63644 1.20329 0.76403 0.86443 0.84738 1.90673 1.44392 1.17514 1.86928 1.23344 1.05468 1.03243 0.95139 1.84746 1.88129 1.21377 0.97620 1.22301 1.51733 1.01879 0.90856 0.89388 1.24717 0.93812 0.97931 0.94889 1.69935 1.46602 1.36236 0.98875 0.86732 0.80209 0.85070 0.79811 1.19262 1.19954 1.15937 0.91942 0.91430 0.92424 0.89890 0.90209 0.89843 0.90004 0.94089 0.89426 0.82396 0.88296 0.89145 0.86758 0.86305 0.74835 0.88602 0.88424 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.10 1.10 5.93 -4.04 -0.02 1.08 16 3 N -0.62 -8.00 2.47 -173.69 -0.43 -8.43 16 4 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 5 C 0.04 0.39 5.67 -3.83 -0.02 0.37 16 6 N -0.67 -4.93 6.12 -107.88 -0.66 -5.59 16 7 C 0.07 0.41 2.74 -68.79 -0.19 0.22 16 8 H 0.09 0.51 7.80 -51.93 -0.41 0.10 16 9 C -0.13 -0.37 5.35 -26.49 -0.14 -0.52 16 10 C -0.14 -0.43 6.08 -27.81 -0.17 -0.60 16 11 C 0.52 3.45 7.74 -11.32 -0.09 3.36 16 12 O -0.51 -5.16 17.88 5.59 0.10 -5.06 16 13 N -0.68 -4.54 5.09 -11.75 -0.06 -4.59 16 14 C 0.53 4.26 7.56 -11.32 -0.09 4.18 16 15 O -0.48 -5.57 15.88 5.60 0.09 -5.48 16 16 C 0.53 9.29 7.69 -10.98 -0.08 9.21 16 17 O -0.52 -10.69 15.44 5.56 0.09 -10.60 16 18 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 19 S -0.15 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 24 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 28 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 35 H 0.04 0.47 8.06 -51.93 -0.42 0.06 16 36 H 0.09 0.99 6.70 -51.93 -0.35 0.64 16 37 H 0.36 2.06 8.37 -39.29 -0.33 1.73 16 38 H 0.10 0.14 8.14 -51.92 -0.42 -0.29 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.12 0.24 8.14 -51.92 -0.42 -0.19 16 42 H 0.41 2.63 8.79 -40.82 -0.36 2.27 16 43 H 0.10 1.73 7.40 -51.91 -0.38 1.35 16 44 H 0.10 1.77 7.18 -51.92 -0.37 1.40 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -36.79 385.73 -7.72 -44.51 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.66 Total: 0.52 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.06 Total: 3.28 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.37 Total: -44.19 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.27 Total: -21.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.79 -7.72 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668365789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.823 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds