Wall clock time and date at job start Wed Apr 1 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47445 * 2 1 4 4 C 1.46503 * 120.00234 * 90.00048 * 3 2 1 5 5 C 1.52997 * 109.47242 * 89.99945 * 4 3 2 6 6 N 1.46895 * 109.46940 * 179.97438 * 5 4 3 7 7 C 1.46908 * 110.99909 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.51866 * 35.12631 * 7 6 5 9 9 C 1.53232 * 109.52425 * 155.31973 * 7 6 5 10 10 C 1.53242 * 108.56852 * 175.52098 * 9 7 6 11 11 C 1.50591 * 109.06606 * 304.20503 * 10 9 7 12 12 O 1.21237 * 119.36384 * 209.28038 * 11 10 9 13 13 N 1.34138 * 121.27961 * 29.54800 * 11 10 9 14 14 C 1.34148 * 122.58329 * 358.90555 * 13 11 10 15 15 O 1.21226 * 119.35637 * 180.82747 * 14 13 11 16 16 C 1.34774 * 120.00052 * 269.99919 * 3 2 1 17 17 O 1.21282 * 120.00344 * 179.97438 * 16 3 2 18 18 C 1.50706 * 119.99975 * 0.02562 * 16 3 2 19 19 S 1.81005 * 109.47271 * 179.97438 * 18 16 3 20 20 C 1.76197 * 99.99834 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00045 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99775 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00133 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00061 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47331 * 89.99959 * 24 22 20 26 26 H 1.48504 * 109.47074 * 210.00273 * 24 22 20 27 27 H 1.48498 * 109.47052 * 330.00226 * 24 22 20 28 28 H 1.08994 * 109.46844 * 59.99767 * 1 2 3 29 29 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46635 * 300.00247 * 1 2 3 31 31 H 1.08998 * 109.47114 * 239.99763 * 2 1 3 32 32 H 1.09000 * 109.47144 * 119.99894 * 2 1 3 33 33 H 1.09004 * 109.46924 * 330.00013 * 4 3 2 34 34 H 1.08996 * 109.47027 * 210.00551 * 4 3 2 35 35 H 1.09004 * 109.47106 * 60.00179 * 5 4 3 36 36 H 1.08998 * 109.47128 * 300.00469 * 5 4 3 37 37 H 1.00900 * 111.00359 * 303.95250 * 6 5 4 38 38 H 1.09009 * 109.62399 * 295.24195 * 9 7 6 39 39 H 1.08998 * 109.62394 * 55.60942 * 9 7 6 40 40 H 1.09000 * 109.52451 * 64.29136 * 10 9 7 41 41 H 1.09008 * 109.52336 * 184.47945 * 10 9 7 42 42 H 0.97001 * 118.71201 * 179.19821 * 13 11 10 43 43 H 1.09008 * 109.46418 * 299.99411 * 18 16 3 44 44 H 1.08997 * 109.47204 * 59.99280 * 18 16 3 45 45 H 0.97002 * 120.00596 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7076 1.8313 1.7104 6 7 3.9526 2.5244 2.9822 7 6 5.3336 2.3159 3.4379 8 1 5.9994 2.2763 2.5758 9 6 5.7498 3.4701 4.3557 10 6 7.1489 3.1752 4.9069 11 6 7.1346 1.8352 5.5938 12 8 7.8953 1.6315 6.5156 13 7 6.3002 0.8606 5.2022 14 6 5.4214 1.0209 4.2014 15 8 4.6840 0.1052 3.9057 16 6 2.2431 2.0165 -1.1672 17 8 2.6470 3.1601 -1.1672 18 6 1.9913 1.3063 -2.4723 19 16 2.3829 2.4154 -3.8481 20 6 2.0096 1.3592 -5.2082 21 1 1.6553 0.3547 -5.0305 22 6 2.1721 1.8181 -6.5081 23 7 1.8937 1.0290 -7.5242 24 14 2.7857 3.5554 -6.8155 25 1 4.2685 3.5496 -6.8965 26 1 2.2221 4.0607 -8.0931 27 1 2.3544 4.4371 -5.7012 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6877 2.0284 34 1 2.0956 3.1410 1.1384 35 1 4.3884 2.2154 0.9507 36 1 3.8745 0.7621 1.8407 37 1 3.7426 3.5082 2.9043 38 1 5.7687 4.4006 3.7881 39 1 5.0403 3.5577 5.1785 40 1 7.8676 3.1607 4.0875 41 1 7.4282 3.9472 5.6240 42 1 6.3305 0.0079 5.6635 43 1 2.6213 0.4185 -2.5302 44 1 0.9433 1.0125 -2.5298 45 1 2.0069 1.3497 -8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668365789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:58 Heat of formation + Delta-G solvation = -134.363251 kcal Electronic energy + Delta-G solvation = -27350.604383 eV Core-core repulsion = 23300.164989 eV Total energy + Delta-G solvation = -4050.439394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48160 -41.01463 -40.00369 -37.85658 -37.00918 -36.12440 -34.67099 -34.06200 -32.05040 -31.17458 -29.45064 -27.87593 -26.98225 -24.98263 -24.36532 -23.93291 -23.27146 -20.63928 -20.13926 -19.44059 -18.80309 -18.33118 -18.19975 -17.56430 -17.33456 -17.08485 -16.67137 -16.29025 -15.99382 -15.87835 -15.59245 -15.52098 -15.22245 -14.93530 -14.85626 -14.80827 -14.53864 -14.05332 -13.94197 -13.53297 -13.39380 -13.33820 -13.13876 -13.01226 -12.83150 -12.65757 -12.54630 -12.14213 -12.02174 -11.96774 -11.85057 -11.41925 -11.33126 -11.31855 -11.16790 -10.93584 -10.53223 -9.79426 -9.61806 -8.99754 -8.51135 -6.22242 0.47546 0.97897 1.31611 1.45844 1.50936 1.54136 1.68808 1.78094 2.04871 2.25225 2.67538 2.86893 2.87678 3.14051 3.49587 3.55145 3.63895 3.98137 4.02483 4.06582 4.09218 4.14293 4.16852 4.36711 4.40318 4.44555 4.53850 4.58904 4.73087 4.79270 4.85161 4.86690 4.93374 4.99380 5.07556 5.07822 5.34735 5.49564 5.68657 5.70927 5.85193 6.11635 6.23756 6.29865 6.37943 6.80454 6.93677 7.08142 8.61239 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002168 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.643300 B =12914.042113 C =13791.290708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.123 3.877 5 C 0.053 3.947 6 N -0.667 5.667 7 C 0.068 3.932 8 H 0.101 0.899 9 C -0.116 4.116 10 C -0.133 4.133 11 C 0.527 3.473 12 O -0.546 6.546 13 N -0.674 5.674 14 C 0.531 3.469 15 O -0.520 6.520 16 C 0.535 3.465 17 O -0.556 6.556 18 C -0.109 4.109 19 S -0.172 6.172 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.235 1.235 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.367 0.633 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.410 0.590 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 3.605 28.153 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.001 3.999 5 C -0.077 4.077 6 N -0.302 5.302 7 C -0.045 4.045 8 H 0.119 0.881 9 C -0.154 4.154 10 C -0.172 4.172 11 C 0.318 3.682 12 O -0.422 6.422 13 N -0.338 5.338 14 C 0.319 3.681 15 O -0.392 6.392 16 C 0.323 3.677 17 O -0.434 6.434 18 C -0.259 4.259 19 S 0.055 5.945 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.184 1.184 27 H -0.159 1.159 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.189 0.811 38 H 0.143 0.857 39 H 0.110 0.890 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.249 0.751 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.567 4.356 28.554 29.622 hybrid contribution 0.093 -1.351 -1.174 1.793 sum 6.660 3.004 27.380 28.338 Atomic orbital electron populations 1.22173 0.94851 1.03455 1.02118 1.21839 0.95330 0.80697 1.04516 1.47900 1.65485 1.15394 1.04761 1.21361 0.96321 0.98263 0.83999 1.22283 0.96464 1.00072 0.88922 1.59913 1.21359 1.18520 1.30375 1.21673 0.92246 0.91973 0.98646 0.88136 1.21947 0.95580 0.97944 0.99942 1.22017 0.99996 0.91702 1.03503 1.21721 0.77026 0.87404 0.82062 1.90796 1.39236 1.82498 1.29663 1.44965 1.36027 1.18466 1.34352 1.21403 0.77365 0.90822 0.78481 1.90739 1.40182 1.43416 1.64878 1.19956 0.76618 0.85943 0.85209 1.90657 1.46524 1.18860 1.87396 1.23324 1.06301 1.02329 0.93973 1.84605 1.88391 1.22801 0.98740 1.22446 1.51256 1.01379 0.92555 0.92138 1.25592 0.94006 1.01783 0.94745 1.70017 1.47762 1.38179 0.99529 0.85848 0.79913 0.80385 0.80105 1.18637 1.18407 1.15905 0.93900 0.89613 0.91528 0.90221 0.87967 0.87859 0.90659 0.95829 0.90645 0.81051 0.85685 0.88950 0.84769 0.84579 0.75111 0.87457 0.87404 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.24 71.98 0.74 -2.22 16 2 C 0.10 1.88 5.93 86.38 0.51 2.39 16 3 N -0.60 -14.71 2.47 -821.82 -2.03 -16.74 16 4 C 0.12 2.45 5.67 86.38 0.49 2.93 16 5 C 0.05 0.98 5.67 86.30 0.49 1.47 16 6 N -0.67 -8.44 6.12 -495.22 -3.03 -11.47 16 7 C 0.07 0.65 2.74 44.21 0.12 0.78 16 8 H 0.10 0.87 7.80 -2.39 -0.02 0.86 16 9 C -0.12 -0.29 5.35 30.75 0.16 -0.13 16 10 C -0.13 -0.41 6.08 29.89 0.18 -0.22 16 11 C 0.53 6.21 7.74 87.72 0.68 6.89 16 12 O -0.55 -10.82 17.88 -2.90 -0.05 -10.87 16 13 N -0.67 -8.56 5.09 -428.61 -2.18 -10.75 16 14 C 0.53 7.99 7.56 87.72 0.66 8.66 16 15 O -0.52 -11.83 15.88 -2.86 -0.05 -11.88 16 16 C 0.54 18.21 7.69 87.66 0.67 18.89 16 17 O -0.56 -22.53 15.44 -3.04 -0.05 -22.58 16 18 C -0.11 -4.12 4.71 71.24 0.34 -3.79 16 19 S -0.17 -8.60 18.55 -56.49 -1.05 -9.64 16 20 C -0.53 -30.64 10.04 67.95 0.68 -29.95 16 21 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 22 C 0.04 2.57 5.50 84.86 0.47 3.04 16 23 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 24 Si 0.92 44.47 27.74 68.60 1.90 46.37 16 25 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.24 -11.34 6.74 99.48 0.67 -10.67 16 28 H 0.04 0.93 7.22 -2.39 -0.02 0.91 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.61 6.44 -2.39 -0.02 1.59 16 32 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.10 1.69 8.07 -2.38 -0.02 1.67 16 34 H 0.07 1.65 7.42 -2.39 -0.02 1.63 16 35 H 0.02 0.52 8.06 -2.38 -0.02 0.50 16 36 H 0.08 1.62 6.70 -2.39 -0.02 1.60 16 37 H 0.37 3.26 8.37 -89.69 -0.75 2.51 16 38 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 39 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.41 5.29 8.79 -92.71 -0.81 4.47 16 43 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 44 H 0.11 3.87 7.18 -2.40 -0.02 3.86 16 45 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -81.34 385.73 -0.60 -81.95 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -0.57 Total: 12.17 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.20 Total: 8.72 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -6.94 Total: -94.24 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.14 Total: -45.33 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.64 kcal Total: -81.34 -0.60 -81.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668365789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.417 kcal (2) G-P(sol) polarization free energy of solvation -81.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds