Wall clock time and date at job start Wed Apr 1 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47592 * 2 1 4 4 C 1.52999 * 109.47213 * 120.00724 * 2 1 3 5 5 N 1.46503 * 109.46926 * 174.99914 * 4 2 1 6 6 C 1.46505 * 119.99942 * 90.00117 * 5 4 2 7 7 C 1.34769 * 119.99949 * 269.99429 * 5 4 2 8 8 O 1.21282 * 120.00192 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00141 * 180.02562 * 7 5 4 10 10 S 1.81002 * 109.47159 * 179.97438 * 9 7 5 11 11 C 1.76206 * 99.99740 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99830 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99644 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99818 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00356 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47130 * 89.99456 * 15 13 11 17 17 H 1.48498 * 109.47340 * 209.99877 * 15 13 11 18 18 H 1.48503 * 109.46726 * 329.99805 * 15 13 11 19 19 N 1.46907 * 109.47066 * 240.00080 * 2 1 3 20 20 C 1.46903 * 110.99714 * 131.07270 * 19 2 1 21 21 H 1.08997 * 109.52000 * 33.84529 * 20 19 2 22 22 C 1.53242 * 109.57056 * 153.99906 * 20 19 2 23 23 C 1.53239 * 108.56784 * 175.55222 * 22 20 19 24 24 C 1.50591 * 109.16157 * 304.38727 * 23 22 20 25 25 O 1.21232 * 119.35948 * 209.11560 * 24 23 22 26 26 N 1.34143 * 121.27996 * 29.09357 * 24 23 22 27 27 C 1.34140 * 122.58692 * 359.45640 * 26 24 23 28 28 O 1.21224 * 119.36056 * 180.82313 * 27 26 24 29 29 H 1.09007 * 109.47230 * 174.66431 * 1 2 3 30 30 H 1.09005 * 109.46640 * 294.66098 * 1 2 3 31 31 H 1.08998 * 109.47473 * 54.66093 * 1 2 3 32 32 H 1.09003 * 109.46722 * 294.99125 * 4 2 1 33 33 H 1.08997 * 109.47597 * 54.99892 * 4 2 1 34 34 H 1.08998 * 109.47559 * 89.99455 * 6 5 4 35 35 H 1.09007 * 109.46669 * 209.99844 * 6 5 4 36 36 H 1.09005 * 109.46912 * 329.99190 * 6 5 4 37 37 H 1.09001 * 109.46987 * 300.00209 * 9 7 5 38 38 H 1.09005 * 109.47196 * 60.00073 * 9 7 5 39 39 H 0.96997 * 119.99906 * 180.02562 * 14 13 11 40 40 H 1.00901 * 110.99740 * 7.12591 * 19 2 1 41 41 H 1.08999 * 109.62790 * 295.27785 * 22 20 19 42 42 H 1.08997 * 109.62335 * 55.64626 * 22 20 19 43 43 H 1.08997 * 109.52593 * 64.29074 * 23 22 20 44 44 H 1.09006 * 109.52620 * 184.41885 * 23 22 20 45 45 H 0.96995 * 118.70301 * 179.47707 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.3344 0.2339 1.7612 7 6 4.0757 -1.8987 0.6113 8 8 3.3851 -2.7764 0.1385 9 6 5.5776 -2.0072 0.5514 10 16 6.0386 -3.5478 -0.2794 11 6 7.7946 -3.4180 -0.2121 12 1 8.2552 -2.5579 0.2511 13 6 8.5859 -4.4217 -0.7534 14 7 9.8976 -4.3245 -0.7036 15 14 7.7893 -5.9096 -1.5540 16 1 7.5768 -5.6400 -2.9987 17 1 8.6755 -7.0906 -1.3958 18 1 6.4821 -6.1811 -0.9036 19 7 2.0197 -0.6925 -1.1995 20 6 3.0447 0.1049 -1.8861 21 1 3.6293 0.6576 -1.1507 22 6 3.9685 -0.8227 -2.6825 23 6 4.9572 0.0376 -3.4766 24 6 4.1896 1.0081 -4.3349 25 8 4.6730 1.3891 -5.3793 26 7 2.9810 1.4587 -3.9665 27 6 2.3810 1.0717 -2.8309 28 8 1.2810 1.5047 -2.5624 29 1 -0.3634 -1.0233 -0.0956 30 1 -0.3633 0.4288 0.9340 31 1 -0.3634 0.5944 -0.8383 32 1 1.7518 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 4.5426 0.0091 2.8072 35 1 5.2723 0.2951 1.2091 36 1 3.8091 1.1865 1.6918 37 1 5.9812 -1.1600 -0.0032 38 1 5.9828 -2.0052 1.5634 39 1 10.4506 -5.0257 -1.0823 40 1 1.2589 -0.9175 -1.8230 41 1 4.5153 -1.4709 -1.9978 42 1 3.3761 -1.4300 -3.3668 43 1 5.5966 0.5884 -2.7868 44 1 5.5712 -0.6032 -4.1096 45 1 2.5229 2.0890 -4.5441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676304603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:19 Heat of formation + Delta-G solvation = -99.729724 kcal Electronic energy + Delta-G solvation = -29498.611365 eV Core-core repulsion = 25449.673794 eV Total energy + Delta-G solvation = -4048.937572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75481 -39.68277 -39.10172 -36.99245 -35.71660 -34.88856 -33.55409 -32.45264 -30.84436 -29.51522 -27.26238 -26.65921 -25.71166 -25.26345 -23.90149 -23.06383 -21.28192 -19.58839 -19.11136 -17.95382 -17.64629 -17.49460 -16.70736 -16.49426 -16.04025 -15.69036 -15.38333 -15.26055 -14.97151 -14.84223 -14.66342 -14.15123 -13.96599 -13.74828 -13.20061 -12.97899 -12.85889 -12.78685 -12.70908 -12.55960 -12.38600 -12.22913 -12.06268 -11.73954 -11.54167 -11.31867 -11.24591 -11.03005 -10.98002 -10.64936 -10.58274 -10.50106 -10.39301 -9.86966 -9.25957 -9.01986 -8.91831 -8.48757 -8.24686 -6.92779 -6.30512 -4.02085 1.22759 2.49929 2.53828 2.76321 3.15022 3.25919 3.31633 3.49059 3.60948 3.69540 3.76454 4.31156 4.39907 4.50757 4.65932 4.76895 4.79889 4.92453 4.95001 5.01325 5.08989 5.09411 5.14515 5.18585 5.33521 5.45950 5.50661 5.59213 5.62335 5.69521 5.71638 5.79974 5.84866 5.94529 5.98048 5.99424 6.21560 6.52061 6.63958 6.78056 7.07986 7.12519 7.56595 7.61413 7.92462 8.40183 8.66469 9.16101 10.78744 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004326 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.093132 B = 6471.362290 C = 8157.106232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.058 0.942 4 C 0.129 3.871 5 N -0.621 5.621 6 C 0.077 3.923 7 C 0.533 3.467 8 O -0.492 6.492 9 C -0.124 4.124 10 S -0.138 6.138 11 C -0.522 4.522 12 H 0.087 0.913 13 C 0.097 3.903 14 N -0.881 5.881 15 Si 0.854 3.146 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.235 1.235 19 N -0.632 5.632 20 C 0.075 3.925 21 H 0.116 0.884 22 C -0.118 4.118 23 C -0.142 4.142 24 C 0.525 3.475 25 O -0.505 6.505 26 N -0.675 5.675 27 C 0.495 3.505 28 O -0.506 6.506 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.270 0.730 40 H 0.348 0.652 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 12.917 1.569 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.040 4.040 3 H 0.076 0.924 4 C 0.005 3.995 5 N -0.357 5.357 6 C -0.067 4.067 7 C 0.319 3.681 8 O -0.364 6.364 9 C -0.275 4.275 10 S 0.089 5.911 11 C -0.669 4.669 12 H 0.105 0.895 13 C -0.112 4.112 14 N -0.517 5.517 15 Si 0.679 3.321 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.159 1.159 19 N -0.263 5.263 20 C -0.039 4.039 21 H 0.134 0.866 22 C -0.156 4.156 23 C -0.182 4.182 24 C 0.314 3.686 25 O -0.377 6.377 26 N -0.340 5.340 27 C 0.282 3.718 28 O -0.379 6.379 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.169 0.831 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -16.358 11.388 0.930 19.953 hybrid contribution 0.136 1.610 -0.469 1.683 sum -16.221 12.998 0.461 20.791 Atomic orbital electron populations 1.22095 0.94521 1.02719 1.02671 1.22024 0.94610 0.96066 0.91278 0.92400 1.21504 0.80256 1.02186 0.95528 1.47681 1.05954 1.21739 1.60337 1.21773 0.95680 0.90350 0.98880 1.20010 0.89444 0.81223 0.77393 1.90694 1.64080 1.38124 1.43454 1.23372 0.94629 1.04330 1.05151 1.84793 1.07479 1.23210 1.75642 1.22327 0.88391 1.11260 1.44967 0.89538 1.24698 0.94199 0.97720 0.94554 1.69937 1.03442 1.34310 1.44038 0.86770 0.81514 0.82601 0.81178 1.19229 1.20097 1.15864 1.60680 1.16280 1.41407 1.07913 1.22074 0.95087 0.92204 0.94547 0.86641 1.21842 0.96435 0.97642 0.99665 1.21997 0.98885 0.97462 0.99886 1.21290 0.80139 0.80754 0.86367 1.90786 1.66733 1.56419 1.23810 1.45026 1.20352 1.44738 1.23885 1.22613 0.86177 0.81444 0.81607 1.90745 1.19653 1.53955 1.73568 0.91723 0.91940 0.91598 0.90994 0.89399 0.92737 0.90895 0.91809 0.89200 0.89075 0.91974 0.83118 0.86490 0.90162 0.86896 0.85838 0.75528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.01 37.16 0.33 -1.00 16 2 C 0.07 0.66 2.30 -67.71 -0.16 0.50 16 3 H 0.06 0.54 7.28 -51.93 -0.38 0.16 16 4 C 0.13 1.28 5.20 -4.04 -0.02 1.25 16 5 N -0.62 -7.00 2.76 -181.56 -0.50 -7.50 16 6 C 0.08 0.64 10.24 59.85 0.61 1.26 16 7 C 0.53 8.20 5.96 -10.99 -0.07 8.14 16 8 O -0.49 -9.14 14.58 5.56 0.08 -9.06 16 9 C -0.12 -2.13 4.41 36.01 0.16 -1.97 16 10 S -0.14 -3.17 18.55 -107.50 -1.99 -5.16 16 11 C -0.52 -14.09 10.04 30.94 0.31 -13.78 16 12 H 0.09 2.45 8.03 -52.49 -0.42 2.03 16 13 C 0.10 2.71 5.50 -17.43 -0.10 2.61 16 14 N -0.88 -25.68 13.97 55.49 0.78 -24.90 16 15 Si 0.85 20.88 27.74 -169.99 -4.72 16.17 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.23 -5.72 6.74 56.52 0.38 -5.34 16 19 N -0.63 -6.74 4.33 -100.87 -0.44 -7.18 16 20 C 0.08 0.74 2.34 -68.79 -0.16 0.58 16 21 H 0.12 1.07 7.61 -51.93 -0.40 0.67 16 22 C -0.12 -1.29 5.70 -26.48 -0.15 -1.44 16 23 C -0.14 -1.42 6.07 -27.81 -0.17 -1.59 16 24 C 0.52 5.78 7.74 -11.32 -0.09 5.69 16 25 O -0.50 -7.24 17.88 5.60 0.10 -7.14 16 26 N -0.67 -6.53 5.09 -11.75 -0.06 -6.59 16 27 C 0.49 5.03 7.34 -11.32 -0.08 4.95 16 28 O -0.51 -6.10 15.86 5.61 0.09 -6.01 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.62 7.42 -51.93 -0.39 0.23 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16 33 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.62 6.44 -51.92 -0.33 0.28 16 36 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.09 1.39 7.40 -51.92 -0.38 1.01 16 38 H 0.09 1.54 8.11 -51.91 -0.42 1.12 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.35 3.76 7.65 -39.29 -0.30 3.46 16 41 H 0.12 1.61 6.88 -51.93 -0.36 1.25 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.41 3.60 8.79 -40.82 -0.36 3.24 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -33.58 379.89 -7.16 -40.74 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.65 Total: 5.71 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 0.43 Total: 5.21 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.22 Total: -46.18 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.27 Total: -22.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.72 Total: 16.17 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -1.99 Total: -5.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.58 -7.16 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.989 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds