Wall clock time and date at job start Wed Apr 1 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47592 * 2 1 4 4 C 1.52999 * 109.47213 * 120.00724 * 2 1 3 5 5 N 1.46503 * 109.46926 * 174.99914 * 4 2 1 6 6 C 1.46505 * 119.99942 * 90.00117 * 5 4 2 7 7 C 1.34769 * 119.99949 * 269.99429 * 5 4 2 8 8 O 1.21282 * 120.00192 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00141 * 180.02562 * 7 5 4 10 10 S 1.81002 * 109.47159 * 179.97438 * 9 7 5 11 11 C 1.76206 * 99.99740 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99830 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99644 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99818 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00356 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47130 * 89.99456 * 15 13 11 17 17 H 1.48498 * 109.47340 * 209.99877 * 15 13 11 18 18 H 1.48503 * 109.46726 * 329.99805 * 15 13 11 19 19 N 1.46907 * 109.47066 * 240.00080 * 2 1 3 20 20 C 1.46903 * 110.99714 * 131.07270 * 19 2 1 21 21 H 1.08997 * 109.52000 * 33.84529 * 20 19 2 22 22 C 1.53242 * 109.57056 * 153.99906 * 20 19 2 23 23 C 1.53239 * 108.56784 * 175.55222 * 22 20 19 24 24 C 1.50591 * 109.16157 * 304.38727 * 23 22 20 25 25 O 1.21232 * 119.35948 * 209.11560 * 24 23 22 26 26 N 1.34143 * 121.27996 * 29.09357 * 24 23 22 27 27 C 1.34140 * 122.58692 * 359.45640 * 26 24 23 28 28 O 1.21224 * 119.36056 * 180.82313 * 27 26 24 29 29 H 1.09007 * 109.47230 * 174.66431 * 1 2 3 30 30 H 1.09005 * 109.46640 * 294.66098 * 1 2 3 31 31 H 1.08998 * 109.47473 * 54.66093 * 1 2 3 32 32 H 1.09003 * 109.46722 * 294.99125 * 4 2 1 33 33 H 1.08997 * 109.47597 * 54.99892 * 4 2 1 34 34 H 1.08998 * 109.47559 * 89.99455 * 6 5 4 35 35 H 1.09007 * 109.46669 * 209.99844 * 6 5 4 36 36 H 1.09005 * 109.46912 * 329.99190 * 6 5 4 37 37 H 1.09001 * 109.46987 * 300.00209 * 9 7 5 38 38 H 1.09005 * 109.47196 * 60.00073 * 9 7 5 39 39 H 0.96997 * 119.99906 * 180.02562 * 14 13 11 40 40 H 1.00901 * 110.99740 * 7.12591 * 19 2 1 41 41 H 1.08999 * 109.62790 * 295.27785 * 22 20 19 42 42 H 1.08997 * 109.62335 * 55.64626 * 22 20 19 43 43 H 1.08997 * 109.52593 * 64.29074 * 23 22 20 44 44 H 1.09006 * 109.52620 * 184.41885 * 23 22 20 45 45 H 0.96995 * 118.70301 * 179.47707 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.3344 0.2339 1.7612 7 6 4.0757 -1.8987 0.6113 8 8 3.3851 -2.7764 0.1385 9 6 5.5776 -2.0072 0.5514 10 16 6.0386 -3.5478 -0.2794 11 6 7.7946 -3.4180 -0.2121 12 1 8.2552 -2.5579 0.2511 13 6 8.5859 -4.4217 -0.7534 14 7 9.8976 -4.3245 -0.7036 15 14 7.7893 -5.9096 -1.5540 16 1 7.5768 -5.6400 -2.9987 17 1 8.6755 -7.0906 -1.3958 18 1 6.4821 -6.1811 -0.9036 19 7 2.0197 -0.6925 -1.1995 20 6 3.0447 0.1049 -1.8861 21 1 3.6293 0.6576 -1.1507 22 6 3.9685 -0.8227 -2.6825 23 6 4.9572 0.0376 -3.4766 24 6 4.1896 1.0081 -4.3349 25 8 4.6730 1.3891 -5.3793 26 7 2.9810 1.4587 -3.9665 27 6 2.3810 1.0717 -2.8309 28 8 1.2810 1.5047 -2.5624 29 1 -0.3634 -1.0233 -0.0956 30 1 -0.3633 0.4288 0.9340 31 1 -0.3634 0.5944 -0.8383 32 1 1.7518 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 4.5426 0.0091 2.8072 35 1 5.2723 0.2951 1.2091 36 1 3.8091 1.1865 1.6918 37 1 5.9812 -1.1600 -0.0032 38 1 5.9828 -2.0052 1.5634 39 1 10.4506 -5.0257 -1.0823 40 1 1.2589 -0.9175 -1.8230 41 1 4.5153 -1.4709 -1.9978 42 1 3.3761 -1.4300 -3.3668 43 1 5.5966 0.5884 -2.7868 44 1 5.5712 -0.6032 -4.1096 45 1 2.5229 2.0890 -4.5441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676304603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:18 Heat of formation + Delta-G solvation = -125.109805 kcal Electronic energy + Delta-G solvation = -29499.711928 eV Core-core repulsion = 25449.673794 eV Total energy + Delta-G solvation = -4050.038134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.63705 -40.71633 -40.08766 -37.91292 -36.65527 -35.85842 -34.58002 -34.41016 -31.73666 -30.69682 -28.07782 -27.74303 -27.49434 -26.23997 -24.77576 -23.92804 -22.11758 -20.56363 -20.21168 -19.37324 -18.83272 -18.38199 -17.82912 -17.44187 -17.10702 -16.92310 -16.66808 -16.30571 -16.19233 -15.78723 -15.60713 -15.50410 -15.04356 -14.86555 -14.75199 -14.20793 -13.88566 -13.79017 -13.53925 -13.34242 -13.28049 -13.25252 -13.10429 -12.95513 -12.90545 -12.65523 -12.45493 -12.34202 -12.07535 -11.80135 -11.76344 -11.53260 -11.41649 -11.35824 -11.08643 -10.52073 -10.35670 -9.78269 -9.13825 -8.84636 -8.43281 -6.10410 0.34310 1.10942 1.36735 1.54084 1.63317 1.66474 1.69712 1.94934 2.30777 2.36382 2.82917 2.84275 2.96180 2.96919 3.53650 3.66959 3.83947 3.96180 3.99394 4.15508 4.22114 4.29697 4.32272 4.40830 4.50489 4.60416 4.62062 4.71583 4.78255 4.85345 4.89633 4.98971 5.03703 5.04578 5.16385 5.26953 5.30977 5.66705 5.77837 5.79599 5.99286 6.21262 6.21698 6.30333 6.57925 6.71002 7.03596 7.51042 8.69065 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004326 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.093132 B = 6471.362290 C = 8157.106232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 H 0.066 0.934 4 C 0.130 3.870 5 N -0.608 5.608 6 C 0.068 3.932 7 C 0.538 3.462 8 O -0.529 6.529 9 C -0.110 4.110 10 S -0.161 6.161 11 C -0.523 4.523 12 H 0.061 0.939 13 C 0.048 3.952 14 N -0.921 5.921 15 Si 0.909 3.091 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.235 1.235 19 N -0.646 5.646 20 C 0.082 3.918 21 H 0.129 0.871 22 C -0.110 4.110 23 C -0.138 4.138 24 C 0.536 3.464 25 O -0.539 6.539 26 N -0.667 5.667 27 C 0.505 3.495 28 O -0.520 6.520 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.274 0.726 40 H 0.346 0.654 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.118 0.882 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 14.247 2.503 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.036 4.036 3 H 0.084 0.916 4 C 0.006 3.994 5 N -0.343 5.343 6 C -0.074 4.074 7 C 0.324 3.676 8 O -0.404 6.404 9 C -0.261 4.261 10 S 0.065 5.935 11 C -0.671 4.671 12 H 0.079 0.921 13 C -0.157 4.157 14 N -0.559 5.559 15 Si 0.732 3.268 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.159 1.159 19 N -0.276 5.276 20 C -0.032 4.032 21 H 0.147 0.853 22 C -0.149 4.149 23 C -0.178 4.178 24 C 0.327 3.673 25 O -0.414 6.414 26 N -0.332 5.332 27 C 0.292 3.708 28 O -0.394 6.394 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.166 0.834 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.930 12.760 1.899 22.089 hybrid contribution 0.548 1.338 -0.652 1.586 sum -17.382 14.098 1.247 22.415 Atomic orbital electron populations 1.22009 0.93698 1.02298 1.03173 1.22027 0.95221 0.96031 0.90295 0.91601 1.21654 0.78845 1.01661 0.97205 1.47621 1.06993 1.20949 1.58710 1.22043 0.95647 0.90576 0.99153 1.19622 0.88208 0.82009 0.77720 1.90689 1.64343 1.39831 1.45558 1.23353 0.96606 1.01420 1.04720 1.84701 1.04119 1.27673 1.76974 1.22517 0.90882 1.10063 1.43606 0.92120 1.25483 0.94624 1.00320 0.95295 1.70024 1.04757 1.35542 1.45612 0.85942 0.80655 0.79788 0.80464 1.18620 1.19315 1.15866 1.60699 1.16476 1.42004 1.08425 1.22025 0.94848 0.91789 0.94556 0.85342 1.21701 0.96428 0.97562 0.99169 1.21986 0.98713 0.97206 0.99865 1.21352 0.80104 0.80195 0.85677 1.90781 1.67591 1.57795 1.25273 1.44917 1.19920 1.44506 1.23824 1.22581 0.85756 0.81022 0.81412 1.90750 1.20241 1.54551 1.73848 0.92317 0.90114 0.92642 0.87733 0.91574 0.91764 0.90914 0.88764 0.87264 0.88595 0.91686 0.83404 0.88837 0.90793 0.84977 0.86344 0.74938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.01 71.98 0.65 -1.53 16 2 C 0.07 1.18 2.30 44.91 0.10 1.29 16 3 H 0.07 0.97 7.28 -2.39 -0.02 0.95 16 4 C 0.13 2.17 5.20 86.38 0.45 2.62 16 5 N -0.61 -11.97 2.76 -846.73 -2.34 -14.30 16 6 C 0.07 0.88 10.24 127.77 1.31 2.19 16 7 C 0.54 15.68 5.96 87.66 0.52 16.20 16 8 O -0.53 -19.23 14.58 -3.03 -0.04 -19.27 16 9 C -0.11 -3.63 4.41 71.24 0.31 -3.32 16 10 S -0.16 -7.37 18.55 -56.49 -1.05 -8.42 16 11 C -0.52 -28.50 10.04 67.95 0.68 -27.82 16 12 H 0.06 3.51 8.03 -2.91 -0.02 3.49 16 13 C 0.05 2.68 5.50 84.86 0.47 3.15 16 14 N -0.92 -54.47 13.97 21.65 0.30 -54.17 16 15 Si 0.91 43.28 27.74 68.60 1.90 45.18 16 16 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 19 N -0.65 -12.74 4.33 -473.05 -2.05 -14.79 16 20 C 0.08 1.47 2.34 44.21 0.10 1.58 16 21 H 0.13 1.98 7.61 -2.39 -0.02 1.96 16 22 C -0.11 -2.31 5.70 30.76 0.18 -2.13 16 23 C -0.14 -2.60 6.07 29.89 0.18 -2.42 16 24 C 0.54 11.25 7.74 87.72 0.68 11.93 16 25 O -0.54 -15.19 17.88 -2.88 -0.05 -15.24 16 26 N -0.67 -11.98 5.09 -428.63 -2.18 -14.17 16 27 C 0.50 9.35 7.34 87.72 0.64 10.00 16 28 O -0.52 -11.52 15.86 -2.86 -0.05 -11.57 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.93 7.42 -2.39 -0.02 0.91 16 32 H 0.10 1.12 8.07 -2.39 -0.02 1.10 16 33 H 0.07 1.46 7.42 -2.39 -0.02 1.44 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.97 6.44 -2.38 -0.02 0.96 16 36 H 0.09 0.70 8.07 -2.38 -0.02 0.68 16 37 H 0.11 3.18 7.40 -2.39 -0.02 3.17 16 38 H 0.10 3.10 8.11 -2.39 -0.02 3.08 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.35 7.11 7.65 -89.69 -0.69 6.42 16 41 H 0.09 2.50 6.88 -2.39 -0.02 2.49 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.41 6.76 8.79 -92.71 -0.81 5.95 16 Total: -1.00 -73.26 379.89 0.22 -73.04 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.51 Total: 21.98 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.28 Total: 11.73 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -6.26 Total: -97.43 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.14 Total: -46.08 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.90 Total: 45.18 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.05 Total: -8.42 kcal Total: -73.26 0.22 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.071 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds