Wall clock time and date at job start Wed Apr 1 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.52992 * 109.47259 * 240.00152 * 2 1 3 5 5 N 1.46501 * 109.47289 * 183.10348 * 4 2 1 6 6 C 1.46499 * 120.00473 * 95.86549 * 5 4 2 7 7 C 1.34780 * 119.99580 * 275.86324 * 5 4 2 8 8 O 1.21279 * 120.00228 * 0.02562 * 7 5 4 9 9 C 1.50701 * 119.99802 * 179.97438 * 7 5 4 10 10 S 1.80995 * 109.47226 * 180.02562 * 9 7 5 11 11 C 1.76201 * 100.00251 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00341 * 180.02562 * 11 10 9 14 14 N 1.31641 * 120.00069 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00446 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46629 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47345 * 119.99272 * 15 13 11 18 18 H 1.48497 * 109.47341 * 239.99960 * 15 13 11 19 19 N 1.46898 * 109.47344 * 119.99740 * 2 1 3 20 20 C 1.46897 * 111.00308 * 280.13260 * 19 2 1 21 21 H 1.09008 * 109.52062 * 34.87619 * 20 19 2 22 22 C 1.53243 * 109.52421 * 154.99695 * 20 19 2 23 23 C 1.53242 * 108.57011 * 175.52084 * 22 20 19 24 24 C 1.50589 * 109.16182 * 304.38745 * 23 22 20 25 25 O 1.21224 * 119.36150 * 209.07269 * 24 23 22 26 26 N 1.34142 * 121.27646 * 29.09063 * 24 23 22 27 27 C 1.34137 * 122.59122 * 359.45847 * 26 24 23 28 28 O 1.21228 * 119.36372 * 180.54133 * 27 26 24 29 29 H 1.08998 * 109.47427 * 60.00368 * 1 2 3 30 30 H 1.09006 * 109.47286 * 299.99960 * 1 2 3 31 31 H 1.09006 * 109.47290 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47431 * 303.10379 * 4 2 1 33 33 H 1.09004 * 109.47396 * 63.09712 * 4 2 1 34 34 H 1.09005 * 109.46857 * 95.34400 * 6 5 4 35 35 H 1.08992 * 109.47639 * 215.34689 * 6 5 4 36 36 H 1.09000 * 109.46776 * 335.35319 * 6 5 4 37 37 H 1.09004 * 109.47491 * 300.00519 * 9 7 5 38 38 H 1.09000 * 109.47141 * 60.00552 * 9 7 5 39 39 H 0.96991 * 120.00191 * 180.02562 * 14 13 11 40 40 H 1.00899 * 110.99979 * 156.17633 * 19 2 1 41 41 H 1.09007 * 109.62145 * 295.24874 * 22 20 19 42 42 H 1.09004 * 109.62215 * 55.61196 * 22 20 19 43 43 H 1.09001 * 109.51946 * 64.29164 * 23 22 20 44 44 H 1.08996 * 109.52378 * 184.47746 * 23 22 20 45 45 H 0.97008 * 118.70795 * 179.45198 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5031 -0.7863 -1.2124 6 6 4.1704 -1.9844 -0.6971 7 6 4.2352 0.2562 -1.6527 8 8 3.6829 1.2482 -2.0789 9 6 5.7403 0.1895 -1.6143 10 16 6.4293 1.7306 -2.2670 11 6 8.1504 1.3870 -2.1100 12 1 8.4773 0.4410 -1.7043 13 6 9.0859 2.3325 -2.5067 14 7 8.6874 3.4858 -3.0008 15 14 10.9104 1.9686 -2.3396 16 1 11.0938 0.6135 -1.7603 17 1 11.5513 2.0260 -3.6779 18 1 11.5366 2.9768 -1.4471 19 7 2.0197 -0.6924 1.1994 20 6 1.9677 0.1883 2.3739 21 1 1.0972 0.8404 2.3020 22 6 1.8683 -0.6600 3.6462 23 6 1.9288 0.2727 4.8606 24 6 3.1830 1.1027 4.7844 25 8 3.7035 1.4886 5.8090 26 7 3.7352 1.4235 3.6048 27 6 3.2198 1.0229 2.4330 28 8 3.7727 1.3387 1.4014 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6319 -1.7316 -1.2775 33 1 1.7227 -0.1763 -2.1384 34 1 4.4269 -2.6427 -1.5271 35 1 5.0786 -1.6955 -0.1684 36 1 3.5019 -2.5064 -0.0125 37 1 6.0718 0.0508 -0.5852 38 1 6.0825 -0.6480 -2.2223 39 1 9.3411 4.1463 -3.2783 40 1 2.9526 -1.0488 1.0557 41 1 0.9242 -1.2050 3.6499 42 1 2.6983 -1.3656 3.6815 43 1 1.0578 0.9280 4.8603 44 1 1.9393 -0.3202 5.7752 45 1 4.5389 1.9668 3.5989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676304605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:24 Heat of formation + Delta-G solvation = -100.120403 kcal Electronic energy + Delta-G solvation = -28880.718865 eV Core-core repulsion = 24831.764352 eV Total energy + Delta-G solvation = -4048.954513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77585 -39.75803 -39.07604 -37.16132 -35.78272 -34.80933 -33.52230 -32.38987 -31.03296 -29.35441 -27.24098 -27.15822 -25.57584 -25.03086 -24.10336 -23.07980 -21.05512 -19.76745 -19.07304 -17.91945 -17.62769 -17.60999 -16.74685 -16.37965 -16.31007 -15.98060 -15.44090 -15.07403 -14.86852 -14.78219 -14.77337 -14.34169 -14.01244 -13.52760 -13.32143 -13.08114 -12.96326 -12.73532 -12.66350 -12.57989 -12.42981 -12.13402 -12.00162 -11.87867 -11.61140 -11.43407 -11.19552 -11.04792 -10.97516 -10.73057 -10.70554 -10.53459 -10.41300 -9.75572 -9.27883 -9.03680 -8.87496 -8.49125 -8.15514 -6.43141 -6.17955 -3.86939 1.25108 2.51012 2.52786 2.98733 3.18046 3.23189 3.28041 3.32827 3.57403 3.60805 3.68469 4.17286 4.20922 4.24118 4.50688 4.64221 4.73661 4.81324 4.89744 5.04163 5.16850 5.17377 5.18644 5.23398 5.31741 5.38064 5.44166 5.47525 5.62794 5.64689 5.66340 5.79459 5.81104 5.83313 5.98379 6.06566 6.20146 6.48380 6.61474 6.68917 6.90325 7.15462 7.58007 7.59958 7.63269 8.38925 8.66499 9.27321 10.89556 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.003431 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.701842 B = 8158.219753 C = 9837.578393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.056 3.944 3 H 0.069 0.931 4 C 0.123 3.877 5 N -0.628 5.628 6 C 0.076 3.924 7 C 0.542 3.458 8 O -0.511 6.511 9 C -0.146 4.146 10 S -0.060 6.060 11 C -0.533 4.533 12 H 0.071 0.929 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.655 5.655 20 C 0.068 3.932 21 H 0.120 0.880 22 C -0.110 4.110 23 C -0.142 4.142 24 C 0.523 3.477 25 O -0.508 6.508 26 N -0.674 5.674 27 C 0.477 3.523 28 O -0.465 6.465 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.267 0.733 40 H 0.350 0.650 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 -13.470 13.710 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.365 5.365 6 C -0.068 4.068 7 C 0.330 3.670 8 O -0.385 6.385 9 C -0.297 4.297 10 S 0.167 5.833 11 C -0.681 4.681 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.288 5.288 20 C -0.046 4.046 21 H 0.138 0.862 22 C -0.149 4.149 23 C -0.182 4.182 24 C 0.311 3.689 25 O -0.382 6.382 26 N -0.341 5.341 27 C 0.262 3.738 28 O -0.334 6.334 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.172 0.828 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -20.036 -11.902 13.057 26.713 hybrid contribution 3.088 -0.498 0.517 3.171 sum -16.948 -12.400 13.574 25.005 Atomic orbital electron populations 1.21764 0.93793 1.02352 1.01705 1.22112 0.95559 0.98465 0.89263 0.91289 1.21511 0.79900 1.01082 0.97607 1.47867 1.05870 1.17186 1.65562 1.21837 0.98294 0.87394 0.99258 1.20189 0.89058 0.81820 0.75919 1.90673 1.72847 1.30462 1.44491 1.23499 0.93866 1.07415 1.04888 1.85373 1.02695 1.13929 1.81295 1.22905 0.91256 1.05098 1.48850 0.91057 1.24980 0.99513 0.94463 0.94637 1.70035 1.34521 1.06058 1.39724 0.86141 0.83096 0.78414 0.77986 1.19652 1.20558 1.20605 1.60994 1.30918 1.34160 1.02751 1.21945 0.94753 0.94006 0.93943 0.86195 1.21722 1.05550 0.97583 0.90003 1.21947 0.95469 0.98991 1.01792 1.21027 0.86129 0.79277 0.82422 1.90796 1.62115 1.51689 1.33559 1.45033 1.30519 1.50845 1.07688 1.22407 0.87809 0.80487 0.83078 1.90998 1.59307 1.51185 1.31917 0.91931 0.92790 0.91785 0.90005 0.89460 0.92437 0.91164 0.90838 0.89608 0.89689 0.92315 0.82776 0.87951 0.90268 0.87021 0.86545 0.74774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.34 37.16 0.35 -0.71 16 2 C 0.06 0.60 2.47 -67.72 -0.17 0.43 16 3 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 4 C 0.12 1.40 5.01 -4.05 -0.02 1.38 16 5 N -0.63 -8.70 2.47 -181.57 -0.45 -9.15 16 6 C 0.08 0.78 8.88 59.85 0.53 1.31 16 7 C 0.54 10.61 7.65 -10.98 -0.08 10.52 16 8 O -0.51 -11.96 15.54 5.56 0.09 -11.88 16 9 C -0.15 -3.13 4.78 36.01 0.17 -2.96 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.62 9.50 30.94 0.29 -15.32 16 12 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 13 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 14 N -0.87 -26.76 13.22 55.49 0.73 -26.03 16 15 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.65 -5.69 5.91 -100.89 -0.60 -6.28 16 20 C 0.07 0.52 2.54 -68.80 -0.17 0.34 16 21 H 0.12 0.79 6.75 -51.92 -0.35 0.44 16 22 C -0.11 -0.51 5.69 -26.48 -0.15 -0.66 16 23 C -0.14 -0.67 6.07 -27.81 -0.17 -0.84 16 24 C 0.52 4.83 7.74 -11.32 -0.09 4.74 16 25 O -0.51 -6.57 17.87 5.61 0.10 -6.47 16 26 N -0.67 -7.01 5.09 -11.75 -0.06 -7.07 16 27 C 0.48 5.42 7.32 -11.33 -0.08 5.34 16 28 O -0.47 -7.68 15.89 5.60 0.09 -7.59 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.36 7.06 -51.93 -0.37 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.70 8.03 -51.93 -0.42 0.29 16 33 H 0.09 1.14 7.61 -51.93 -0.39 0.74 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.77 6.66 -51.93 -0.35 0.42 16 36 H 0.07 0.55 6.97 -51.93 -0.36 0.19 16 37 H 0.09 1.77 7.41 -51.91 -0.38 1.39 16 38 H 0.08 1.69 8.11 -51.92 -0.42 1.27 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.35 3.47 4.89 -39.29 -0.19 3.28 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.41 4.66 8.79 -40.82 -0.36 4.30 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -38.87 382.10 -7.71 -46.58 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.45 Total: 3.54 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.31 Total: 5.62 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.37 Total: -48.53 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: 0.28 Total: -25.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.87 -7.71 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.537 kcal (2) G-P(sol) polarization free energy of solvation -38.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds