Wall clock time and date at job start Wed Apr 1 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.52992 * 109.47259 * 240.00152 * 2 1 3 5 5 N 1.46501 * 109.47289 * 183.10348 * 4 2 1 6 6 C 1.46499 * 120.00473 * 95.86549 * 5 4 2 7 7 C 1.34780 * 119.99580 * 275.86324 * 5 4 2 8 8 O 1.21279 * 120.00228 * 0.02562 * 7 5 4 9 9 C 1.50701 * 119.99802 * 179.97438 * 7 5 4 10 10 S 1.80995 * 109.47226 * 180.02562 * 9 7 5 11 11 C 1.76201 * 100.00251 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00341 * 180.02562 * 11 10 9 14 14 N 1.31641 * 120.00069 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00446 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46629 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47345 * 119.99272 * 15 13 11 18 18 H 1.48497 * 109.47341 * 239.99960 * 15 13 11 19 19 N 1.46898 * 109.47344 * 119.99740 * 2 1 3 20 20 C 1.46897 * 111.00308 * 280.13260 * 19 2 1 21 21 H 1.09008 * 109.52062 * 34.87619 * 20 19 2 22 22 C 1.53243 * 109.52421 * 154.99695 * 20 19 2 23 23 C 1.53242 * 108.57011 * 175.52084 * 22 20 19 24 24 C 1.50589 * 109.16182 * 304.38745 * 23 22 20 25 25 O 1.21224 * 119.36150 * 209.07269 * 24 23 22 26 26 N 1.34142 * 121.27646 * 29.09063 * 24 23 22 27 27 C 1.34137 * 122.59122 * 359.45847 * 26 24 23 28 28 O 1.21228 * 119.36372 * 180.54133 * 27 26 24 29 29 H 1.08998 * 109.47427 * 60.00368 * 1 2 3 30 30 H 1.09006 * 109.47286 * 299.99960 * 1 2 3 31 31 H 1.09006 * 109.47290 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47431 * 303.10379 * 4 2 1 33 33 H 1.09004 * 109.47396 * 63.09712 * 4 2 1 34 34 H 1.09005 * 109.46857 * 95.34400 * 6 5 4 35 35 H 1.08992 * 109.47639 * 215.34689 * 6 5 4 36 36 H 1.09000 * 109.46776 * 335.35319 * 6 5 4 37 37 H 1.09004 * 109.47491 * 300.00519 * 9 7 5 38 38 H 1.09000 * 109.47141 * 60.00552 * 9 7 5 39 39 H 0.96991 * 120.00191 * 180.02562 * 14 13 11 40 40 H 1.00899 * 110.99979 * 156.17633 * 19 2 1 41 41 H 1.09007 * 109.62145 * 295.24874 * 22 20 19 42 42 H 1.09004 * 109.62215 * 55.61196 * 22 20 19 43 43 H 1.09001 * 109.51946 * 64.29164 * 23 22 20 44 44 H 1.08996 * 109.52378 * 184.47746 * 23 22 20 45 45 H 0.97008 * 118.70795 * 179.45198 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5031 -0.7863 -1.2124 6 6 4.1704 -1.9844 -0.6971 7 6 4.2352 0.2562 -1.6527 8 8 3.6829 1.2482 -2.0789 9 6 5.7403 0.1895 -1.6143 10 16 6.4293 1.7306 -2.2670 11 6 8.1504 1.3870 -2.1100 12 1 8.4773 0.4410 -1.7043 13 6 9.0859 2.3325 -2.5067 14 7 8.6874 3.4858 -3.0008 15 14 10.9104 1.9686 -2.3396 16 1 11.0938 0.6135 -1.7603 17 1 11.5513 2.0260 -3.6779 18 1 11.5366 2.9768 -1.4471 19 7 2.0197 -0.6924 1.1994 20 6 1.9677 0.1883 2.3739 21 1 1.0972 0.8404 2.3020 22 6 1.8683 -0.6600 3.6462 23 6 1.9288 0.2727 4.8606 24 6 3.1830 1.1027 4.7844 25 8 3.7035 1.4886 5.8090 26 7 3.7352 1.4235 3.6048 27 6 3.2198 1.0229 2.4330 28 8 3.7727 1.3387 1.4014 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6319 -1.7316 -1.2775 33 1 1.7227 -0.1763 -2.1384 34 1 4.4269 -2.6427 -1.5271 35 1 5.0786 -1.6955 -0.1684 36 1 3.5019 -2.5064 -0.0125 37 1 6.0718 0.0508 -0.5852 38 1 6.0825 -0.6480 -2.2223 39 1 9.3411 4.1463 -3.2783 40 1 2.9526 -1.0488 1.0557 41 1 0.9242 -1.2050 3.6499 42 1 2.6983 -1.3656 3.6815 43 1 1.0578 0.9280 4.8603 44 1 1.9393 -0.3202 5.7752 45 1 4.5389 1.9668 3.5989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676304605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:23 Heat of formation + Delta-G solvation = -132.038942 kcal Electronic energy + Delta-G solvation = -28882.102957 eV Core-core repulsion = 24831.764352 eV Total energy + Delta-G solvation = -4050.338604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58846 -40.98197 -40.09457 -38.16411 -36.70019 -35.89481 -34.62635 -34.28563 -31.83913 -30.76493 -28.19625 -27.87447 -27.70354 -26.20747 -24.72405 -23.86231 -21.93636 -20.67955 -20.26650 -19.54247 -18.76369 -18.39281 -18.03019 -17.39223 -17.24427 -17.17781 -16.92382 -16.39910 -16.10034 -15.94181 -15.69650 -15.52202 -15.22579 -14.64079 -14.56532 -14.35952 -13.98430 -13.77846 -13.55445 -13.51980 -13.36505 -13.19961 -13.03166 -12.95870 -12.89281 -12.70974 -12.59221 -12.32079 -12.06118 -11.95983 -11.73659 -11.54048 -11.38558 -11.30916 -11.19578 -10.85601 -10.30046 -9.69112 -9.65618 -8.69966 -8.38484 -6.16500 0.42188 1.23135 1.37213 1.42758 1.54156 1.64923 1.72871 1.75023 2.14171 2.24383 2.90062 2.92896 2.95172 3.24744 3.59676 3.72159 3.74359 3.90512 4.02720 4.15838 4.16218 4.23894 4.32333 4.37512 4.41100 4.46602 4.63000 4.68895 4.75036 4.85206 4.88411 4.89362 4.96111 5.06044 5.08362 5.24468 5.36461 5.39826 5.64102 5.69999 5.83327 6.09454 6.15430 6.29834 6.37650 6.74423 7.02121 7.20658 8.71285 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.003431 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.701842 B = 8158.219753 C = 9837.578393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.061 3.939 3 H 0.020 0.980 4 C 0.118 3.882 5 N -0.612 5.612 6 C 0.067 3.933 7 C 0.540 3.460 8 O -0.562 6.562 9 C -0.119 4.119 10 S -0.152 6.152 11 C -0.546 4.546 12 H 0.079 0.921 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.274 1.274 19 N -0.636 5.636 20 C 0.070 3.930 21 H 0.137 0.863 22 C -0.097 4.097 23 C -0.131 4.131 24 C 0.522 3.478 25 O -0.550 6.550 26 N -0.680 5.680 27 C 0.479 3.521 28 O -0.527 6.527 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.271 0.729 40 H 0.343 0.657 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.534 -17.133 15.576 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.050 4.050 3 H 0.038 0.962 4 C -0.005 4.005 5 N -0.346 5.346 6 C -0.075 4.075 7 C 0.328 3.672 8 O -0.440 6.440 9 C -0.270 4.270 10 S 0.076 5.924 11 C -0.693 4.693 12 H 0.097 0.903 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.199 1.199 19 N -0.268 5.268 20 C -0.044 4.044 21 H 0.154 0.846 22 C -0.135 4.135 23 C -0.170 4.170 24 C 0.314 3.686 25 O -0.426 6.426 26 N -0.343 5.343 27 C 0.267 3.733 28 O -0.400 6.400 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.097 0.903 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -21.570 -15.640 14.968 30.560 hybrid contribution 3.461 0.596 0.005 3.512 sum -18.109 -15.043 14.973 27.900 Atomic orbital electron populations 1.21712 0.91063 1.03880 1.02135 1.21999 0.97546 0.95738 0.89673 0.96214 1.21785 0.77993 1.03264 0.97429 1.47804 1.06938 1.16481 1.63359 1.22156 0.98728 0.86051 1.00552 1.19890 0.88360 0.82682 0.76299 1.90649 1.73290 1.32762 1.47286 1.23300 0.95486 1.03480 1.04731 1.85544 1.04345 1.20014 1.82536 1.23208 0.91274 1.05651 1.49214 0.90286 1.26152 1.05282 0.93966 0.93749 1.70201 1.36581 1.07329 1.40699 0.84897 0.75683 0.78887 0.78413 1.18049 1.19504 1.19933 1.61125 1.30108 1.33317 1.02230 1.22255 0.92870 0.94182 0.95134 0.84576 1.21736 1.07405 0.96830 0.87482 1.22090 0.93266 0.98834 1.02824 1.22038 0.86905 0.78640 0.81027 1.90780 1.63605 1.53527 1.34663 1.45259 1.30204 1.50432 1.08403 1.23276 0.88339 0.79594 0.82119 1.90990 1.61383 1.53693 1.33902 0.92647 0.91396 0.89530 0.85767 0.91636 0.90706 0.92046 0.87035 0.89028 0.87917 0.91972 0.83587 0.84442 0.90272 0.84291 0.84369 0.76202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.34 71.98 0.67 -0.97 16 2 C 0.06 1.22 2.47 44.91 0.11 1.33 16 3 H 0.02 0.60 6.77 -2.39 -0.02 0.59 16 4 C 0.12 2.53 5.01 86.38 0.43 2.96 16 5 N -0.61 -16.50 2.47 -846.76 -2.09 -18.59 16 6 C 0.07 1.20 8.88 127.77 1.13 2.34 16 7 C 0.54 21.89 7.65 87.66 0.67 22.56 16 8 O -0.56 -28.03 15.54 -3.03 -0.05 -28.07 16 9 C -0.12 -5.25 4.78 71.24 0.34 -4.91 16 10 S -0.15 -9.02 20.57 -56.49 -1.16 -10.18 16 11 C -0.55 -32.84 9.50 67.95 0.65 -32.19 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 13 C 0.01 0.77 5.49 84.85 0.47 1.24 16 14 N -0.91 -58.09 13.22 21.65 0.29 -57.80 16 15 Si 1.00 45.29 29.55 68.60 2.03 47.32 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 N -0.64 -9.34 5.91 -473.10 -2.80 -12.14 16 20 C 0.07 0.90 2.54 44.21 0.11 1.01 16 21 H 0.14 1.39 6.75 -2.38 -0.02 1.37 16 22 C -0.10 -0.46 5.69 30.76 0.18 -0.29 16 23 C -0.13 -0.74 6.07 29.89 0.18 -0.56 16 24 C 0.52 9.16 7.74 87.72 0.68 9.84 16 25 O -0.55 -14.18 17.87 -2.86 -0.05 -14.23 16 26 N -0.68 -14.53 5.09 -428.64 -2.18 -16.71 16 27 C 0.48 11.02 7.32 87.72 0.64 11.66 16 28 O -0.53 -18.53 15.89 -2.87 -0.05 -18.58 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.68 7.06 -2.38 -0.02 0.67 16 31 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.12 1.64 8.03 -2.38 -0.02 1.62 16 33 H 0.07 1.73 7.61 -2.38 -0.02 1.71 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.06 1.25 6.66 -2.39 -0.02 1.23 16 36 H 0.11 1.19 6.97 -2.39 -0.02 1.17 16 37 H 0.09 3.90 7.41 -2.39 -0.02 3.89 16 38 H 0.10 4.11 8.11 -2.39 -0.02 4.09 16 39 H 0.27 15.94 8.31 -92.72 -0.77 15.17 16 40 H 0.34 6.00 4.89 -89.69 -0.44 5.56 16 41 H 0.14 -0.12 8.14 -2.38 -0.02 -0.13 16 42 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 43 H 0.14 0.15 8.14 -2.39 -0.02 0.14 16 44 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.40 9.93 8.79 -92.70 -0.81 9.12 16 Total: -1.00 -93.48 382.10 -0.02 -93.49 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.22 Total: 21.48 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.26 Total: 14.01 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.79 Total: -105.25 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -0.14 Total: -60.88 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -93.48 -0.02 -93.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.545 kcal (2) G-P(sol) polarization free energy of solvation -93.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds