Wall clock time and date at job start Wed Apr 1 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34260 * 125.75377 * 2 1 4 4 C 1.38046 * 107.41966 * 179.73789 * 3 2 1 5 5 C 1.47427 * 126.41379 * 180.20772 * 4 3 2 6 6 O 1.21597 * 120.00364 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99764 * 179.97438 * 5 4 3 8 8 N 1.40096 * 120.00171 * 179.97438 * 7 5 4 9 9 C 1.34773 * 120.00410 * 180.02562 * 8 7 5 10 10 O 1.21583 * 120.00154 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99574 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99624 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46720 * 180.02562 * 12 11 9 14 14 C 1.38639 * 119.75132 * 269.72550 * 13 12 11 15 15 C 1.37618 * 120.24958 * 179.72389 * 14 13 12 16 16 C 1.40712 * 119.74313 * 0.57004 * 15 14 13 17 17 C 1.41392 * 120.24575 * 179.67979 * 16 15 14 18 18 H 1.08007 * 120.00112 * 155.31484 * 17 16 15 19 19 C 1.39944 * 120.00237 * 335.31987 * 17 16 15 20 20 N 1.30827 * 119.99589 * 342.22478 * 19 17 16 21 21 Si 1.86797 * 120.00450 * 162.23154 * 19 17 16 22 22 H 1.48493 * 109.47536 * 94.66151 * 21 19 17 23 23 H 1.48505 * 109.47237 * 214.66507 * 21 19 17 24 24 H 1.48501 * 109.47012 * 334.65765 * 21 19 17 25 25 C 1.40726 * 119.51232 * 359.70997 * 16 15 14 26 26 C 1.37608 * 119.74055 * 359.97438 * 25 16 15 27 27 C 1.41293 * 107.16625 * 0.24028 * 4 3 2 28 28 N 1.30445 * 108.02272 * 0.02562 * 27 4 3 29 29 H 1.08997 * 109.47269 * 90.00010 * 1 2 3 30 30 H 1.09001 * 109.46793 * 209.99960 * 1 2 3 31 31 H 1.09001 * 109.46887 * 329.99631 * 1 2 3 32 32 H 1.08001 * 126.28950 * 0.02562 * 3 2 1 33 33 H 0.97004 * 120.00067 * 0.02562 * 7 5 4 34 34 H 0.97004 * 119.99762 * 0.02562 * 8 7 5 35 35 H 0.96994 * 120.00253 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47334 * 300.00310 * 12 11 9 37 37 H 1.09003 * 109.46775 * 60.00503 * 12 11 9 38 38 H 1.08001 * 119.87065 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.13079 * 180.28456 * 15 14 13 40 40 H 0.97001 * 119.99911 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.12489 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.87127 * 180.02562 * 26 25 16 43 43 H 1.08002 * 125.98177 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6553 0.0060 5 6 4.7637 1.5063 0.0125 6 8 4.6525 2.7171 0.0124 7 7 5.9878 0.9420 0.0186 8 7 7.1318 1.7505 0.0242 9 6 8.3558 1.1863 0.0297 10 8 9.3487 1.8880 0.0350 11 7 8.4791 -0.1559 0.0303 12 6 9.8095 -0.7691 0.0357 13 6 9.6708 -2.2697 0.0346 14 6 9.6082 -2.9557 1.2378 15 6 9.4758 -4.3255 1.2488 16 6 9.4162 -5.0308 0.0327 17 6 9.2871 -6.4388 0.0317 18 1 8.8523 -6.9407 -0.8202 19 6 9.7225 -7.1823 1.1344 20 7 10.5472 -6.6487 1.9986 21 14 9.1264 -8.9365 1.3725 22 1 10.1136 -9.8786 0.7868 23 1 8.9762 -9.2157 2.8234 24 1 7.8154 -9.1098 0.6969 25 6 9.4866 -4.3246 -1.1825 26 6 9.6123 -2.9544 -1.1694 27 6 3.5311 -0.7573 0.0040 28 7 2.2827 -1.1355 -0.0033 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9165 2.1170 0.0004 33 1 6.0765 -0.0240 0.0182 34 1 7.0431 2.7165 0.0241 35 1 7.6870 -0.7157 0.0264 36 1 10.3582 -0.4547 -0.8520 37 1 10.3509 -0.4546 0.9280 38 1 9.6594 -2.4126 2.1699 39 1 9.4226 -4.8575 2.1872 40 1 10.8493 -7.1641 2.7627 41 1 9.4422 -4.8561 -2.1216 42 1 9.6661 -2.4102 -2.1008 43 1 4.3919 -1.4095 0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683425624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:52 Heat of formation + Delta-G solvation = 47.847291 kcal Electronic energy + Delta-G solvation = -28061.595891 eV Core-core repulsion = 23915.906539 eV Total energy + Delta-G solvation = -4145.689352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43445 -41.44700 -40.06800 -39.39875 -36.79206 -36.34370 -35.01909 -34.47415 -32.48657 -31.87054 -31.14186 -30.96189 -28.51241 -27.84241 -25.46029 -24.25389 -22.86823 -22.47688 -22.09510 -21.77872 -21.48248 -20.22487 -19.20544 -19.05352 -18.02835 -17.18802 -16.95105 -16.65672 -16.55632 -16.48308 -16.01502 -15.76883 -15.69143 -15.57067 -15.33080 -15.22207 -14.84656 -14.22021 -13.92209 -13.80149 -13.71224 -13.53121 -13.45036 -13.30863 -12.92469 -12.72640 -12.48957 -12.36248 -12.23399 -12.15160 -11.75782 -11.44466 -11.25809 -11.16371 -11.00283 -10.62572 -10.23496 -9.87358 -9.36247 -9.29724 -9.25708 -8.65005 -6.34214 0.45636 0.69970 0.89927 1.07595 1.18124 1.40611 1.46104 1.52091 1.55399 1.93112 2.13555 2.21698 2.35604 2.76481 3.31294 3.71683 3.75362 3.83969 4.04854 4.14369 4.18145 4.36794 4.44776 4.52755 4.56897 4.65154 4.71517 4.73584 4.82606 5.09270 5.17549 5.26728 5.34275 5.40367 5.41495 5.47227 5.60533 5.72262 5.84885 5.96843 6.12137 6.24331 6.26274 6.39852 6.49844 6.65065 6.71540 6.94957 7.03964 7.19535 7.40623 8.31410 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.002683 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.661996 B =10433.392791 C =13112.682366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.360 5.360 3 C 0.147 3.853 4 C -0.312 4.312 5 C 0.606 3.394 6 O -0.578 6.578 7 N -0.516 5.516 8 N -0.528 5.528 9 C 0.712 3.288 10 O -0.615 6.615 11 N -0.722 5.722 12 C 0.209 3.791 13 C -0.227 4.227 14 C -0.079 4.079 15 C -0.192 4.192 16 C 0.088 3.912 17 C -0.495 4.495 18 H 0.077 0.923 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.242 4.242 26 C -0.065 4.065 27 C 0.083 3.917 28 N -0.325 5.325 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.217 0.783 33 H 0.431 0.569 34 H 0.441 0.559 35 H 0.402 0.598 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.288 0.712 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 10.461 -1.871 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.137 5.137 3 C -0.007 4.007 4 C -0.329 4.329 5 C 0.396 3.604 6 O -0.457 6.457 7 N -0.268 5.268 8 N -0.283 5.283 9 C 0.411 3.589 10 O -0.493 6.493 11 N -0.378 5.378 12 C 0.086 3.914 13 C -0.229 4.229 14 C -0.098 4.098 15 C -0.211 4.211 16 C 0.086 3.914 17 C -0.524 4.524 18 H 0.095 0.905 19 C -0.179 4.179 20 N -0.446 5.446 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.262 4.262 26 C -0.083 4.083 27 C -0.104 4.104 28 N -0.144 5.144 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.234 0.766 33 H 0.275 0.725 34 H 0.286 0.714 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.500 10.564 -1.660 22.240 hybrid contribution 0.408 -0.632 0.234 0.788 sum -19.092 9.932 -1.427 21.568 Atomic orbital electron populations 1.22436 0.70757 1.06749 1.05496 1.48844 1.08779 1.03128 1.52966 1.23372 0.89289 0.94968 0.93103 1.19792 0.92519 0.93290 1.27252 1.17415 0.80958 0.87011 0.75004 1.90780 1.86584 1.15099 1.53224 1.44622 0.97705 1.07282 1.77162 1.44365 0.95530 1.07518 1.80895 1.15802 0.81783 0.83111 0.78165 1.90981 1.34915 1.62538 1.60845 1.45435 1.10603 1.03588 1.78205 1.19695 0.82060 0.88317 1.01299 1.19137 1.17576 0.93147 0.92997 1.20757 0.98546 0.93771 0.96705 1.21251 1.08556 0.93367 0.97937 1.17991 0.87682 0.93763 0.91982 1.19893 1.37078 0.92473 1.02958 0.90524 1.26734 0.92218 1.04869 0.94063 1.69872 1.22855 1.40390 1.11495 0.85248 0.79802 0.76458 0.78593 1.18978 1.19185 1.18085 1.21147 1.13800 0.94598 0.96630 1.20686 0.97433 0.93451 0.96758 1.24491 0.96108 0.93789 0.96057 1.77240 1.02513 1.09164 1.25533 0.88685 0.88557 0.85923 0.76647 0.72543 0.71376 0.76183 0.91761 0.92280 0.87689 0.88288 0.90083 0.88461 0.86520 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.44 127.77 1.46 1.81 16 2 N -0.36 -4.83 3.98 -367.78 -1.46 -6.29 16 3 C 0.15 1.98 11.30 84.28 0.95 2.94 16 4 C -0.31 -5.54 6.13 -20.15 -0.12 -5.66 16 5 C 0.61 13.09 7.93 86.66 0.69 13.78 16 6 O -0.58 -15.72 16.74 -4.02 -0.07 -15.78 16 7 N -0.52 -10.36 6.25 -175.88 -1.10 -11.46 16 8 N -0.53 -13.00 6.26 -184.75 -1.16 -14.16 16 9 C 0.71 21.07 8.68 179.05 1.55 22.62 16 10 O -0.62 -22.92 17.18 -3.98 -0.07 -22.98 16 11 N -0.72 -19.73 5.51 -482.30 -2.66 -22.39 16 12 C 0.21 6.69 5.79 85.63 0.50 7.18 16 13 C -0.23 -8.41 5.27 -19.67 -0.10 -8.51 16 14 C -0.08 -3.27 9.67 22.22 0.21 -3.06 16 15 C -0.19 -9.32 8.70 22.73 0.20 -9.12 16 16 C 0.09 4.44 5.57 -21.29 -0.12 4.33 16 17 C -0.49 -25.29 9.05 23.46 0.21 -25.08 16 18 H 0.08 3.78 7.91 -2.91 -0.02 3.76 16 19 C 0.04 1.77 5.14 85.26 0.44 2.21 16 20 N -0.82 -41.29 10.97 21.83 0.24 -41.05 16 21 Si 0.98 36.52 29.59 68.60 2.03 38.55 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 25 C -0.24 -10.87 9.80 22.73 0.22 -10.64 16 26 C -0.06 -2.49 9.67 22.21 0.21 -2.28 16 27 C 0.08 1.44 11.50 85.65 0.99 2.43 16 28 N -0.32 -6.30 12.50 -56.27 -0.70 -7.01 16 29 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.43 6.86 5.66 -213.32 -1.21 5.65 16 34 H 0.44 11.03 8.10 -213.32 -1.73 9.30 16 35 H 0.40 9.27 6.38 -92.71 -0.59 8.68 16 36 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 37 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 38 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.10 5.13 6.18 -2.91 -0.02 5.11 16 40 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 41 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.21 2.59 7.50 -2.91 -0.02 2.57 16 Total: -1.00 -70.71 378.76 -0.09 -70.79 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -2.43 Total: 38.83 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 7.29 Total: -7.05 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.84 Total: -102.35 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.14 Total: -38.77 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -70.71 -0.09 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683425624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.640 kcal (2) G-P(sol) polarization free energy of solvation -70.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds